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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060179 ID=TCONS_00060179|Name=TCONS_00060179|organism=Clytia hemisphaerica|type=transcript|length=2968bpRun BLAST on NCBI protein sequence of TCONS_00060179-protein >TCONS_00060179-protein ID=TCONS_00060179-protein|Name=TCONS_00060179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp MTSCYVPRRYIMILFSHFGFFIVYALRVNLSVVLVAMVNSTYANVDNSDPRun BLAST on NCBI transcript from alignment at scaffold_336:160852..183432- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060179 ID=TCONS_00060179|Name=TCONS_00060179|organism=Clytia hemisphaerica|type=transcript|length=22581bp|location=Sequence derived from alignment at scaffold_336:160852..183432- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_336:160852..183432- >TCONS_00060179 ID=TCONS_00060179|Name=TCONS_00060179|organism=Clytia hemisphaerica|type=CDS|length=17928bp|location=Sequence derived from alignment at scaffold_336:160852..183432- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060179 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 4.564e-107 Identity = 201/465 (43.23%), Postives = 284/465 (61.08%), Query Frame = 3
Query: 633 RYIMILFSHFGFFIVYALRVNLSVVLVAMVNSTYANVDNSDPECRSTDTNVTAAEYN--GGEFNWNQNQQGIILSSFFYGYLLTQVPGGWLSMKFGGKXXXXXXXXXXXXXXXXXPLAARTSIYWLIVVRVLEGFGEGVTFPAMHSLLAQWAPPEEISRMAVIAYSGMQTGTIVSLPLSGVLADSSFLGGWPSAFYVLGAVGCVWFLFWMIFIYDGPENHPSISNVERLYITKSHNNSSSDTKSTKIPWSHILTSRPVWAIMIGLFSHCWVWYMLLTGLPSYFSEVLDFKLKNNGFLSALPYLSSFVVQQIGGWFADYLRKNW-ISTTAARRLAGILAFYPSAGFLLLVSYAGCDQIALSVGYLVLAVTFITLNQIGLICSQVDIAPRYVGIIMGLANSAGTIAGCITPSVTGYFTNEHPTREQYRKVFMIAASICVIGGTFCNVFVSGELQPW--NDIYHDEEN 2012
RY + + + FGFFIVYALRVNLSV LV MV+S DN + + +N G ++ W+ QG IL SFFYGY++TQ+PGG+++ K GGK++LG G+LGT VLT+ TP+AA + LIV+R LEG GEGVTFPAMH++ + WAPP E S++ I+Y+G Q GT++SLPLSG++ + W FY G +G WFL W+ + D P+ H IS+ E+ YI S N S KS +PW IL S P+WAI++ FS+ W +Y LLT LP+Y E+L F ++ NGFLS+LPYL S++ + G AD LR W ST RR+ ++ A FL+ + GCD +L+V +L ++ T G + +DIAP Y GI++G+ N+ TI G + P + T ++ T +++ VF IAA+I V G F +F GE+Q W ND +H +
Sbjct: 39 RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIIC---YYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKS--VPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDY-SLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDN-TVGEWQTVFYIAAAINVFGAIFFTLFAKGEVQNWALND-HHGHRH 495 The following BLAST results are available for this feature:
BLAST of TCONS_00060179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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