TCONS_00060144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060144
Unique NameTCONS_00060144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060144 ID=TCONS_00060144|Name=TCONS_00060144|organism=Clytia hemisphaerica|type=transcript|length=515bp
CCCTTGGATAAACGTCCATAGCTTCTACATTTATTGTTTCCGGGGGCAGA
GTATCTAATCTTTGAATATTGTGAAGATGGACTGAAGCATTTTCTGCAAA
CAAATGAAATGATTCTATTGGATAATCAGGGTGTTCTCGTGTTATCAGTC
TAGATTTAATCATTACTTTTCAATTCACCTACTCTTACATTGTTCAAGAG
ATCAATGAAGTCAGAGTCATCCTTTTGACGCATAATCTCATCTAATTCAG
CTAGTTTGAATAGGTGCCATAAATTGAATGCACCAATAATAGGTCCATCA
GTTGAAAATActgaactttgaaaaattggaggtAATTGAAAGAGGTCTCC
ACAAACAATGATACTTTTCCCTGCAAATGGTGTGTTGTCATTTACACCAA
AAATTTCACATAATCTTGTATGGATGTTCAAAAGCTGTTGCGACGAAATC
ATAGATATTTCATCAATTATTATCAACTTTGCATGATGTAGTTTATTTCT
AATGGCAGTCCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00060144-protein

>TCONS_00060144-protein ID=TCONS_00060144-protein|Name=TCONS_00060144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
QRTAIRNKLHHAKLIIIDEISMISSQQLLNIHTRLCEIFGVNDNTPFAGK
SIIVCGDLFQLPPIFQSSVFSTDGPIIGAFNLWHLFKLAELDEIMRQKDD
SDFIDLLNNVRVGELKSND
Run BLAST on NCBI

transcript from alignment at scaffold_334:319867..320381

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060144 ID=TCONS_00060144|Name=TCONS_00060144|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_334:319867..320381 (Clytia hemisphaerica)
CAAAGGACTGCCATTAGAAATAAACTACATCATGCAAAGTTGATAATAAT
TGATGAAATATCTATGATTTCGTCGCAACAGCTTTTGAACATCCATACAA
GATTATGTGAAATTTTTGGTGTAAATGACAACACACCATTTGCAGGGAAA
AGTATCATTGTTTGTGGAGACCTCTTTCAATTacctccaatttttcaaag
ttcagTATTTTCAACTGATGGACCTATTATTGGTGCATTCAATTTATGGC
ACCTATTCAAACTAGCTGAATTAGATGAGATTATGCGTCAAAAGGATGAC
TCTGACTTCATTGATCTCTTGAACAATGTAAGAGTAGGTGAATTGAAAAG
TAATGATTAAATCTAGACTGATAACACGAGAACACCCTGATTATCCAATA
GAATCATTTCATTTGTTTGCAGAAAATGCTTCAGTCCATCTTCACAATAT
TCAAAGATTAGATACTCTGCCCCCGGAAACAATAAATGTAGAAGCTATGG
ACGTTTATCCAAGGG

Coding sequence (CDS) from alignment at scaffold_334:319867..320381

>TCONS_00060144 ID=TCONS_00060144|Name=TCONS_00060144|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_334:319867..320381 (Clytia hemisphaerica)
CAAAGGACTGCCATTAGAAATAAACTACATCATGCAAAGTTGATAATAAT
TGATGAAATATCTATGATTTCGTCGCAACAGCTTTTGAACATCCATACAA
GATTATGTGAAATTTTTGGTGTAAATGACAACACACCATTTGCAGGGAAA
AGTATCATTGTTTGTGGAGACCTCTTTCAATTacctccaatttttcaaag
ttcagTATTTTCAACTGATGGACCTATTATTGGTGCATTCAATTTATGGC
ACCTATTCAAACTAGCTGAATTAGATGAGATTATGCGTCAAAAGGATGAC
TCTGACTTCATTGATCTCTTGAACAATGTAAGAGTAGGTGAATTGAAAAG
TAATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037840XLOC_037840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060144-exon-scaffold_334-1491911889:319867..320381TCONS_00060144-exon-scaffold_334-1491911889:319867..320381Clytia hemisphaericaexon
TCONS_00060144-exon-scaffold_334-1510915933:319867..320381TCONS_00060144-exon-scaffold_334-1510915933:319867..320381Clytia hemisphaericaexon
TCONS_00060144-exon-scaffold_334-1575043694:319867..320381TCONS_00060144-exon-scaffold_334-1575043694:319867..320381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060144-proteinTCONS_00060144-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:319867..320381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76821	3.58675	2.26412	1.16794	0.169502	0.40953	0.338927	0.985024	1.16068	1.04598	3.6726	1.28025	1.06757	1.28584	1.31353	0.912741	0	1.44905	1.56168	1.94965	1.56837	3.51467	0.243011	1.69847	0.309515	0.538189	2.12892	3.13596	0.977565	1.81277
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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