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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=transcript|length=1839bp
ggaaaaGTGGAGAACGACATTCAGCACAGTTGGGAGGACTCTGGCCACGA
CATCAATCATCTTCCAAGACTACCACCAATGGTTGGAGGAGACGTCGACG
TGATGATAGGTATACGTTATCTTCGTTTCTTTCCTAAATTCATCCACCAG
TTACCTTCTGGCTTGACCATCTACCAATCACAATTCAAGAACATCGATGG
ATCTTATGGGGTGATCGGTGGTCCCCATGAGGTATTCACAAGTATCGAAA
ATCATCATCACTCAACTTNAGACATTCGATTACTTGGATCAGCTACCTTC
AGTGAGGTTCGACATGACTTGTATTTCACTAACAACCCAACTTACCAAAT
CAACAACGACGAATCTGAACCATCAACTTCATACATCACCAATCTTAATG
AGAAGTTCGAATCAGTTGGTACAGACCTTAACTATCGCTGTGTCAATTGT
CGAAAGTGTTTAACCTGTAAGAACCATTCTACAGAAGATTCCATTAGCAT
CCAAGAGGAGGTCGAGCAAGACTTGATTAATCGCTCCATCACTATCGACC
CATCCAATTGTTCATCGATTGCTAATCTTCCACTAATACACGACCCTCTG
GTCAAACTGGCACCAAATCGAGACATTGCACTTCGCGTTTACATACAACA
GCTTAAACGTTTGGAAAAGCATCAAGACGATAAGGACGGCATCCTCATCT
CAGAGAAGAAACTGCAACACCTGGGATTCGTCGAATATGTCAAGAATTTG
CCCACTGACATCCAAAAGCAACtatgtcggtgttttttacacttttggca
aaaacgtgaagtttttttaaacaggttttaaaataaatacaaaatgcaTG
GGAAGGCTACACAACGAATGCTAGATCTTCAATCGACATCATTCTGTGTC
CCAATCTTGGAGAAGTCATCACCAATCGCCTACAGCATCGTCAACGACAT
CCATTGGAACCACATCACTGCTTCACATTCTGGTGTGGAGACCACTTGGA
GATATGTTCTTCAGAAAGTTTTCATCATCGAAGGAAGGAGTCTGGTCAAG
TCAATTCGATCAAATTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCAT
CGACGTATCAACGGGACCAGTATCACCTGACAACCTGATGATTGCTCCAA
TCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCATTTGAATCATACTCG
TATCACAACAAGAGGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCTG
TGCTACTACCACCACCATCAGCATCAAATGCATGGAGGATTACTCGACAA
ACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTTGGGTATCCA
CGTCGACTGCTCACTGATGAGGGCAGCCAACTCGNCACCATCAGCATCAA
ATGCATGGAGGATTACTCGACAAACGCATTCCTACAAGCATTCACTCGAC
TATCGTGCGAAGTTGGGTATCCACGTCGACTGCTCACTGATGAGGGCAGT
CAACTCGTCAAGGCTTGCGAAACACTTCAAATTGATTTCCAAGACATCCA
ACGTCGTCTCTTCAAAGAATCCAATGTCGATTTCAACACTTGTCCAGTTG
GAGGCCACAATATGAATGGTCTCGTAGAACGAAAAATTCGTGAAGTCAAG
AAGTCCATCCAAAAATCAGTCTCCAATCAACGACTATCAATCATGCAATG
GGAGACATTCGCATCTCGAGCAGCAAACAGCATCAATGATCTACCATTAG
GCATTCGTGACTACGATGGAGACTTGCAATCATTGGATATCATCACACCA
AATAGACTGAGACTTGGACGAAACAACGACAGAAGCCNN Run BLAST on NCBI protein sequence of TCONS_00005980-protein >TCONS_00005980-protein ID=TCONS_00005980-protein|Name=TCONS_00005980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MHGKATQRMLDLQSTSFCVPILEKSSPIAYSIVNDIHWNHITASHSGVET
TWRYVLQKVFIIEGRSLVKSIRSNCERCRYLLKKTIDVSTGPVSPDNLMI
APIFYVSQVDLCGPFESYSYHNKRATVKIWYAVFCCATTTTISIKCMEDY
STNAFLQAFTRLSCEVGYPRRLLTDEGSQLXTISIKCMEDYSTNAFLQAF
TRLSCEVGYPRRLLTDEGSQLVKACETLQIDFQDIQRRLFKESNVDFNTC
PVGGHNMNGLVERKIREVKKSIQKSVSNQRLSIMQWETFASRAANSINDL
PLGIRDYDGDLQSLDIITPNRLRLGRNNDRSX Run BLAST on NCBI transcript from alignment at sc0000061:810308..812146 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0000061:810308..812146 (Clytia hemisphaerica)
NNGGCTTCTGTCGTTGTTTCGTCCAAGTCTCAGTCTATTTGGTGTGATGA
TATCCAATGATTGCAAGTCTCCATCGTAGTCACGAATGCCTAATGGTAGA
TCATTGATGCTGTTTGCTGCTCGAGATGCGAATGTCTCCCATTGCATGAT
TGATAGTCGTTGATTGGAGACTGATTTTTGGATGGACTTCTTGACTTCAC
GAATTTTTCGTTCTACGAGACCATTCATATTGTGGCCTCCAACTGGACAA
GTGTTGAAATCGACATTGGATTCTTTGAAGAGACGACGTTGGATGTCTTG
GAAATCAATTTGAAGTGTTTCGCAAGCCTTGACGAGTTGACTGCCCTCAT
CAGTGAGCAGTCGACGTGGATACCCAACTTCGCACGATAGTCGAGTGAAT
GCTTGTAGGAATGCGTTTGTCGAGTAATCCTCCATGCATTTGATGCTGAT
GGTGNCGAGTTGGCTGCCCTCATCAGTGAGCAGTCGACGTGGATACCCAA
CTTCGCACGATAGTCGAGTGAATGCTTGTAGGAATGCGTTTGTCGAGTAA
TCCTCCATGCATTTGATGCTGATGGTGGTGGTAGTAGCACAGCAGAAGAC
GGCGTACCAGATCTTGACAGTGGCCCTCTTGTTGTGATACGAGTATGATT
CAAATGGACCACACAAATCGACTTGAGATACGTAGAAGATTGGAGCAATC
ATCAGGTTGTCAGGTGATACTGGTCCCGTTGATACGTCGATGGTTTTCTT
GAGAAGGTATCGACACCTTTCACAATTTGATCGAATTGACTTGACCAGAC
TCCTTCCTTCGATGATGAAAACTTTCTGAAGAACATATCTCCAAGTGGTC
TCCACACCAGAATGTGAAGCAGTGATGTGGTTCCAATGGATGTCGTTGAC
GATGCTGTAGGCGATTGGTGATGACTTCTCCAAGATTGGGACACAGAATG
ATGTCGATTGAAGATCTAGCATTCGTTGTGTAGCCTTCCCAtgcattttg
tatttattttaaaacctgtttaaaaaaacttcacgtttttgccaaaagtg
taaaaaacaccgacataGTTGCTTTTGGATGTCAGTGGGCAAATTCTTGA
CATATTCGACGAATCCCAGGTGTTGCAGTTTCTTCTCTGAGATGAGGATG
CCGTCCTTATCGTCTTGATGCTTTTCCAAACGTTTAAGCTGTTGTATGTA
AACGCGAAGTGCAATGTCTCGATTTGGTGCCAGTTTGACCAGAGGGTCGT
GTATTAGTGGAAGATTAGCAATCGATGAACAATTGGATGGGTCGATAGTG
ATGGAGCGATTAATCAAGTCTTGCTCGACCTCCTCTTGGATGCTAATGGA
ATCTTCTGTAGAATGGTTCTTACAGGTTAAACACTTTCGACAATTGACAC
AGCGATAGTTAAGGTCTGTACCAACTGATTCGAACTTCTCATTAAGATTG
GTGATGTATGAAGTTGATGGTTCAGATTCGTCGTTGTTGATTTGGTAAGT
TGGGTTGTTAGTGAAATACAAGTCATGTCGAACCTCACTGAAGGTAGCTG
ATCCAAGTAATCGAATGTCTNAAGTTGAGTGATGATGATTTTCGATACTT
GTGAATACCTCATGGGGACCACCGATCACCCCATAAGATCCATCGATGTT
CTTGAATTGTGATTGGTAGATGGTCAAGCCAGAAGGTAACTGGTGGATGA
ATTTAGGAAAGAAACGAAGATAACGTATACCTATCATCACGTCGACGTCT
CCTCCAACCATTGGTGGTAGTCTTGGAAGATGATTGATGTCGTGGCCAGA
GTCCTCCCAACTGTGCTGAATGTCGTTCTCCACttttcc Coding sequence (CDS) from alignment at sc0000061:810308..812146 >TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000061:810308..812146 (Clytia hemisphaerica)
NNGGCTTCTGTCGTTGTTTCGTCCAAGTCTCAGTCTATTTGGTGTGATGA
TATCCAATGATTGCAAGTCTCCATCGTAGTCACGAATGCCTAATGGTAGA
TCATTGATGCTGTTTGCTGCTCGAGATGCGAATGTCTCCCATTGCATGAT
TGATAGTCGTTGATTGGAGACTGATTTTTGGATGGACTTCTTGACTTCAC
GAATTTTTCGTTCTACGAGACCATTCATATTGTGGCCTCCAACTGGACAA
GTGTTGAAATCGACATTGGATTCTTTGAAGAGACGACGTTGGATGTCTTG
GAAATCAATTTGAAGTGTTTCGCAAGCCTTGACGAGTTGACTGCCCTCAT
CAGTGAGCAGTCGACGTGGATACCCAACTTCGCACGATAGTCGAGTGAAT
GCTTGTAGGAATGCGTTTGTCGAGTAATCCTCCATGCATTTGATGCTGAT
GGTGNCGAGTTGGCTGCCCTCATCAGTGAGCAGTCGACGTGGATACCCAA
CTTCGCACGATAGTCGAGTGAATGCTTGTAGGAATGCGTTTGTCGAGTAA
TCCTCCATGCATTTGATGCTGATGGTGGTGGTAGTAGCACAGCAGAAGAC
GGCGTACCAGATCTTGACAGTGGCCCTCTTGTTGTGATACGAGTATGATT
CAAATGGACCACACAAATCGACTTGAGATACGTAGAAGATTGGAGCAATC
ATCAGGTTGTCAGGTGATACTGGTCCCGTTGATACGTCGATGGTTTTCTT
GAGAAGGTATCGACACCTTTCACAATTTGATCGAATTGACTTGACCAGAC
TCCTTCCTTCGATGATGAAAACTTTCTGAAGAACATATCTCCAAGTGGTC
TCCACACCAGAATGTGAAGCAGTGATGTGGTTCCAATGGATGTCGTTGAC
GATGCTGTAGGCGATTGGTGATGACTTCTCCAAGATTGGGACACAGAATG
ATGTCGATTGAAGATCTAGCATTCGTTGTGTAGCCTTCCCAtgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005980-exon-sc0000061-1491911889:810308..812146 | TCONS_00005980-exon-sc0000061-1491911889:810308..812146 | Clytia hemisphaerica | exon |
| TCONS_00005980-exon-sc0000061-1510915933:810308..812146 | TCONS_00005980-exon-sc0000061-1510915933:810308..812146 | Clytia hemisphaerica | exon |
| TCONS_00005980-exon-sc0000061-1575043694:810308..812146 | TCONS_00005980-exon-sc0000061-1575043694:810308..812146 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:810308..812146 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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