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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060057 ID=TCONS_00060057|Name=TCONS_00060057|organism=Clytia hemisphaerica|type=transcript|length=1819bp
CTGGATGGTTTTCAAGTTTAGGGCATCTGAATCATATGCAATAGAAAATA
AGACTTACTACAAACTTTAGACctcagatttttaaaattcttttcctTTA
CCCATGTATGCTGATTCCCAGATGAAATGCCGTCagacttttttatttat
gcATCGGTTTTAACACACaagtttttttgacattttaatatGTCAATCTT
TCCGGTCTGGCTTTTTGACACAATGAACAAAGGTAGCCACTTGATAGTCC
GAAACAGAAAGCTTAAAGTTTTAAGTGCATATTTAACATAAGAAACAGAA
ACTTACGTGAAATCATCTAGCAAAGTAATATTTTAAATGTCTTTTAGCTA
AATGGAAGCGTTTTGGGTGAGTGAGATGTTATTTGCAGggaaacattttt
aattttagaaatgACTTACTATAGGGactattagtgaggttaagtaaatc
ggcaaaatcacgacgacgaacgaaaatttaacaggctagtgagtttcaac
caatcacattccttattttcactagcctattacatttttcgtccgtcgtc
gtgattatcctggtatgcttaacctcagtattaTCAGTGTTTCAAACAAT
CTGTGGCAAGCTGAAGATGGCtaagaaaaaatcatttaagaCGGTTTTTT
CATTACGGGatgaatttcaaattcaatgtCCTAGGGACATTAAGTAACAT
TCTATGCTCAACTCTCTTAGTCACACAGATGTATGGGTTTAGAAactaaa
gtaatttttgtaaCGTCTTTATTTCTTTACTTTCAGAAATGACTTTCAAT
AGAGAGCTTCAAATAAGCTTACTTTCAATATCATGTGTCGCCATCGCTGT
AGTTAACCTCGTTTGCATCATTGTCATCGTCAACTCAACAAAACTTCGTC
GCAAACCTCCCACAATCTTAATCGGGAATTTGATCGGAACACATATGATT
CAAGGAATATGCGTACTACCTTTATACATCTTACGCATCAAGAATCCTGC
ACTTGTTGCGATTTGTGATGGATTTTATTTTACCTATATGTTAACATTCT
ATAGTGCTACTATCAGTGTTTTTCTACTCAGCTTGGATCGAGTTTTAGCT
GTTATTTTGTTAAACTCCTATGATAAATATGTGACAATGAATAATGTTAT
CAAAGTCACTGTCATTGCTTGGAGCTATATATTTGCCTTATGTTTAATGC
CATTCTTCAAACTTGAAAGATCTAAAGCTTTGAAACATTCGATATGTACA
TACCTTCAACCTAGAGCATGGACTATATTCATGTTAACCGTAAACGCATT
AATTCCTTACGTATTTATAGTTATCGGTTACGTTTATGTACGcgttaaat
tgaaaaaattatcggCGTATTTCGCAGCTGCGGAAGTAACGAAAGACGGG
GACCAACGTGAACGTAAGAAACGTGAAAGACGTACGAAGAAGTTTAAGAA
ACGTAGTAAAATCACTAAATTGACATTCCTTATAGTTTTCACGTATGGTG
TAACATGGGCTCCATCTATCATTTACTATCTGGTACAACACATATGCACC
AGTTGTATTCCCGATAAATATTACCAGAGTGAATTAAAAGACATTCTATC
GTTCTTGATGAAGTATATCAATTTCTTTGATGCAATGATCGCACCAGTGT
TATATTGTTATTTTCATGATGAATTTCGACATGAATTTAAGAGGATTATA
TTACGGAAGGAGAAGACGATATCAACAAGTAGCTTTATATCAGACTCCAA
TGCTGTAAGCACAATGTCGACCAATACATTCGCTTTGAAGGAAACGACGA
GTATAAGATCTAATTGAGT Run BLAST on NCBI transcript from alignment at scaffold_333:361403..363221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060057 ID=TCONS_00060057|Name=TCONS_00060057|organism=Clytia hemisphaerica|type=transcript|length=1819bp|location=Sequence derived from alignment at scaffold_333:361403..363221- (Clytia hemisphaerica)
CTGGATGGTTTTCAAGTTTAGGGCATCTGAATCATATGCAATAGAAAATA
AGACTTACTACAAACTTTAGACCTCAGATTTTTAAAATTCTTTTCCTTTA
CCCATGTATGCTGATTCCCAGATGAAATGCCGTCAGACTTTTTTATTTAT
GCATCGGTTTTAACACACAAGTTTTTTTGACATTTTAATATGTCAATCTT
TCCGGTCTGGCTTTTTGACACAATGAACAAAGGTAGCCACTTGATAGTCC
GAAACAGAAAGCTTAAAGTTTTAAGTGCATATTTAACATAAGAAACAGAA
ACTTACGTGAAATCATCTAGCAAAGTAATATTTTAAATGTCTTTTAGCTA
AATGGAAGCGTTTTGGGTGAGTGAGATGTTATTTGCAGGGAAACATTTTT
AATTTTAGAAATGACTTACTATAGGGACTATTAGTGAGGTTAAGTAAATC
GGCAAAATCACGACGACGAACGAAAATTTAACAGGCTAGTGAGTTTCAAC
CAATCACATTCCTTATTTTCACTAGCCTATTACATTTTTCGTCCGTCGTC
GTGATTATCCTGGTATGCTTAACCTCAGTATTATCAGTGTTTCAAACAAT
CTGTGGCAAGCTGAAGATGGCTAAGAAAAAATCATTTAAGACGGTTTTTT
CATTACGGGATGAATTTCAAATTCAATGTCCTAGGGACATTAAGTAACAT
TCTATGCTCAACTCTCTTAGTCACACAGATGTATGGGTTTAGAAACTAAA
GTAATTTTTGTAACGTCTTTATTTCTTTACTTTCAGAAATGACTTTCAAT
AGAGAGCTTCAAATAAGCTTACTTTCAATATCATGTGTCGCCATCGCTGT
AGTTAACCTCGTTTGCATCATTGTCATCGTCAACTCAACAAAACTTCGTC
GCAAACCTCCCACAATCTTAATCGGGAATTTGATCGGAACACATATGATT
CAAGGAATATGCGTACTACCTTTATACATCTTACGCATCAAGAATCCTGC
ACTTGTTGCGATTTGTGATGGATTTTATTTTACCTATATGTTAACATTCT
ATAGTGCTACTATCAGTGTTTTTCTACTCAGCTTGGATCGAGTTTTAGCT
GTTATTTTGTTAAACTCCTATGATAAATATGTGACAATGAATAATGTTAT
CAAAGTCACTGTCATTGCTTGGAGCTATATATTTGCCTTATGTTTAATGC
CATTCTTCAAACTTGAAAGATCTAAAGCTTTGAAACATTCGATATGTACA
TACCTTCAACCTAGAGCATGGACTATATTCATGTTAACCGTAAACGCATT
AATTCCTTACGTATTTATAGTTATCGGTTACGTTTATGTACGCGTTAAAT
TGAAAAAATTATCGGCGTATTTCGCAGCTGCGGAAGTAACGAAAGACGGG
GACCAACGTGAACGTAAGAAACGTGAAAGACGTACGAAGAAGTTTAAGAA
ACGTAGTAAAATCACTAAATTGACATTCCTTATAGTTTTCACGTATGGTG
TAACATGGGCTCCATCTATCATTTACTATCTGGTACAACACATATGCACC
AGTTGTATTCCCGATAAATATTACCAGAGTGAATTAAAAGACATTCTATC
GTTCTTGATGAAGTATATCAATTTCTTTGATGCAATGATCGCACCAGTGT
TATATTGTTATTTTCATGATGAATTTCGACATGAATTTAAGAGGATTATA
TTACGGAAGGAGAAGACGATATCAACAAGTAGCTTTATATCAGACTCCAA
TGCTGTAAGCACAATGTCGACCAATACATTCGCTTTGAAGGAAACGACGA
GTATAAGATCTAATTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060057-exon-scaffold_333-1575043694:361403..363221 | TCONS_00060057-exon-scaffold_333-1575043694:361403..363221 | Clytia hemisphaerica | exon |
| TCONS_00060057-exon-scaffold_333-1510915933:361403..363221 | TCONS_00060057-exon-scaffold_333-1510915933:361403..363221 | Clytia hemisphaerica | exon |
| TCONS_00060057-exon-scaffold_333-1491911889:361403..363221 | TCONS_00060057-exon-scaffold_333-1491911889:361403..363221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:361403..363221 - |
Blast
The following BLAST results are available for this feature:
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