TCONS_00005862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005862
Unique NameTCONS_00005862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005862 ID=TCONS_00005862|Name=TCONS_00005862|organism=Clytia hemisphaerica|type=transcript|length=1662bp
TATCTGTGTCGCAGATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAAAC
ATGGATTTTGGGCTTTTGAACGACAAGGGGTGGTTCCGGATATCATATCC
ATCGGAAAACCAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCACTAC
AGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCAATA
CGTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAGTGCATGCATGGAA
GTGATACGAGATGAGAAGTTACAAGAAAATGCTGAAACCGTGGGAGAATA
TACCATGGCCAAATTACgagaattaaaagaaaaacatgaaattatTGGTG
ATGTCAGGGGTGTTGGATTATTCTTGGGGATCGAGTTGGTGAAGAGCCGC
CAAACTAAAGAACCAGCAACATCACAAGCCAAAAGAATAAGTTACTTATT
ACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTCCAGGAAGAAATGTAT
TGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGACGACATGGACATGTTT
GTTGAACAATTGGATAAAGTATTGACAGAGTTTGAACGGGAACAACAAAT
GTGAATGAATTTGAAAGAGTATCAGAAACTCATCTTGAGAATGTATAGTA
GACAATAGTTTAGTGACAAGAAAAAACTGTAAACTTTTTGTTTGACGAAA
GGTTTGTAAGTTGTAAATTATAAACTTCACCAATATTcagaggaattttt
ttttcgaaatcgccGTGAGATTTCAGGTAAATCTCATTGAAAAGCTGCAA
TCGTTTAACATTGCTTGGTAAAAAgctaaaatttcttttattacTCAATT
AATTGCCATAGCTTTGGGAAACCAGGAGAATTTTCTGTTGTTCGAATATT
TCGAATTAGAGATCGTTGACTGTATGGCGAATCTTTAAACAAATTTAacc
taaaatattatttttaatagAATTAGCGTAAACGTAATCCAATCAGCTTT
TAGTAGTAAAGTCTTAaactctccataactcaaatTATTACGGGGTTACG
GAGGCCTAACTGTAAACTAACATGTAAAAAAATCGGTAGAAAAAAAGAGC
TGGAACTCTTTTATTTCTCAGAAGAACAATTTTCTAAACGTAGTTAAGGG
CAAACACACAGATTTTTGTGTAAAAGCTATCAATCTGTATTGAGGACTCA
GATTACAACGAAAAACATGgagtttaaaaatataaaaaaagtatacGGTT
TGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGTACTTTTACTAATTTG
TTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCATAGAAGGCATAAAAT
TGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGGTCTTGGATTCCAGCA
AAGGggtttgatttcaaaaatactgatgtaaatattttaaaattaatata
taaaatgctttaaaaatcaatttgaataattttaacagatttgatataaa
caaaaaataaagattctTTGTATTATTTTATGTTCGATTATTtttaaaag
acaataaaaaacttcaaaagtttGTAATCTTCACATAACTAATGTTGTCA
TGATTTACAATTCTAACCTTGGACcaatctccgagcagattctgatactc
cgCCCATTGCAC
Run BLAST on NCBI

transcript from alignment at sc0000061:787906..794613+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005862 ID=TCONS_00005862|Name=TCONS_00005862|organism=Clytia hemisphaerica|type=transcript|length=6708bp|location=Sequence derived from alignment at sc0000061:787906..794613+ (Clytia hemisphaerica)
TATCTGTGTCGCAGATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAAAC
ATGGATTTTGGGCTTTTGAACGACAAGGTATATTTTTGTATATTGTAGAT
GATAATTCACTACATACCAGAATTCTTCTCAGACTGGTTTTCTCTTTTAA
TTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACTTGCTCATGGGTTAAA
GAGCTGTTTCTATCCCCTCTACACTTGCCTCATTCATTTAAATTGAAAGA
TTGCTCATCAGTACATTAACTATAATTCAAACGTTTCTTGTTTGTTTAAC
TCACAAACCCTTGTAAACGACTTGCTCTATTATTACTCGAACCCTCTATC
CGTAACATATCATTAAATTCGTCTGGTAGCCTATTCACAATTTGACCTAT
TTTACCTTCATTATTCTGGGAGCAGAATTCAATTGCTCGAGTTATAGACG
ACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTATACAttgttggaacg
gaaattttatgctgattatggaaacccgggTATTAAAAAGTCTTTCCgga
caaaattgcaaacgagcctggagtttgcactccttCGGGGCGTTTTTTCG
CTTTTCCCTGTTTTATAAAAATGCATCTATTTTTATACCCTCCAAACACA
CTTCTTCATTCTTAGGGGTGGTTCCGGATATCATATCCATCGGAAAACCA
ATGGGGAACGGACATCCGGTCGCTTGTGTTGTCACTACAGAAGCCGTCGC
TCAAGCATTAGAAGATACCAAAATCTGTTACTTCAATACGGTGAGTAAAA
TGGACCCTCCCTTAGAACTAACATACACtcgagtctccataactcgaaca
ctcacggggaacacaaattggCCCAGGATATAGAAAATTCGAGTTGTAGG
ATAAGCTCTATAAACAGcagaatctccataactcgaagatGCTCGAGGGA
CGGCAACTTTGTTCGAGtggttgaaaattcaaaatataggGTAAACTTTA
TAAGGTTTTGTTACCTGAAGGGACCATAatacttgttcgagttaaggagg
aATTTGAGTTACAGAAGTTAGAAATAAAAACTTGTCATAATAGGACCGTT
CCTATTTTATTTAGACTCAACGGTATTCCCAACTCCGTCGGTCGGTACCC
CCTGGATGACTATAAAATCAGATCAGCCAAACTTGAGAAGTCCCGTAAAA
TACCCTTTTTTCAGTGTACAAgctgaatttaattttgctttcaattttag
TTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAGTGCATGCATGGAAGT
GATACGAGATGAGAAGTTACAAGAAAATGCTGAAACCGTGGGAGAATATA
CCATGGCCAAATTACGtgaattaaaagaaaaacatgaaattatTGGTGAT
GTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAATACCCAGAGGAGGGTC
TGACTGGGAAAGGGGTTTGACCTTAATCGAAAATTAGTCTGATTTGTACT
TCTCTATCAATGAAGTAAAtgcctgaagggctagaatcgaatctttatca
tttctcaggcaagaaaagtgGAGTCTTATAAAATATgcaccgtatttttg
acgacggattgaatcaaACGATtgctttgttttcgagtgatatctttttc
gaaatttaggtgtaaattttagtttcaatccgtcaTTTGTGTTGAACCAG
GCGGACTGCGCTAGGCCGCGCANAAATTCAATCCCACAgtccttttcgtc
ttaattcaaaagtcgtgaaagttattacttgttctttgtaattgagtgta
atttgcgtgcaagcgtAATAAACGCGAAGGGTGATggattgaatttcagt
caaacataaaactcaatgtctatttttagattcgcgacGGTGTGCTATTT
GGGAATGATACCAAACAATTATGTTTGAAAGTATTCTAAATGACGCCTAT
TGACCTTTAGATTGGGATGTTTATAGCAGAATCCTTAATTGGATGTGGTG
GACAAGTTATATTACCTGCTGGCTATCTAAAACGAATATACGCGTAAGTT
GTAATATAAATCCACAGCGTTAAACCAAGTTCGCAGGTAACGGTTCAGTT
TCGCTCCTAAacggaatgaagccattctattggttagaagagACGTGCAA
ATCGagtttaaccaatagaatgacttCATTTTGTTTCGTAGCGAAACGGA
ACCGGTGCTTGTGAACGTGATTAATCAATACAATCATCTGACGTTACATG
ACAGTCTGGATGTTTATTAGATGTTGTTTTGACGTTAAAACCTTGGTCAT
TCATTGTTCTGGTTGAGTTTATTAGGGTAATATCTGAAGAATCAACTAAT
AGACCTCATTTTGAAAACTCTTGGCTTGACTACACGAAAAAGAAACATGG
ATAACTGAAGACCAATTTTAGGAAATAGCTATTTTCAGCTgcgattatta
tttttttcattcttagCCACGTTCGAAAATTGGGAGGTATCTGTGTCGCA
GATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAAACATGGATTTTGGGC
TTTTGAACGACAAGGTATATTTTTGTATATTGTAGATGATAATTCACTAC
ATACCAGAATTCTTCTCAGACTGGTTTTCTCTTTTAATTCTCCTTTCCTA
CCCGATGTGTTTTTTCTTAACTTGCTCATGGGTTAAAGAGCTGTTTCTAT
CCCCTCTACACTTGCCTCATTCATTTAAATTGAAAGATTGCTCATCAGTA
CATTAACTATAATTCAAACGTTTCTTGTTTGTTTAACTCACAAACCCTTG
TAAACGACTTGCTCTATTATTACTCGAACCCTCTATCCGTAACATATCAT
TAAATTCGTCTGGTAGCCTATTCACAATTTGACCTATTTTACCTTCATTA
TTCTGGGAGCAGAATTCAATTGCTCGAGTTATAGACGACTTTGCTCAACC
CAGAAGGTGAATGGGGCTGTTATACAttgttggaacggaaattttatgct
gattatggaaacccgggTATTAAAAAGTCTTTCCggacaaaattgcaaac
gagcctggagtttgcactccttCGGGGCGTTTTTTCGCTTTTCCCTGTTT
TATAAAAATGCATCTATTTTTATACCCTCCAAACACACTTCTTCATTCTT
AGGGGTGGTTCCGGATATCATATCCATCGGAAAACCAATGGGGAACGGAC
ATCCGGTCGCTTGTGTTGTCACTACAGAAGCCGTCGCTCAAGCATTAGAA
GATACCAAAATCTGTTACTTCAATACGGTGAGTAAAATGGACCCTCCCTT
AGAACTAACATACACtcgagtctccataactcgaacactcacggggaaca
caaattggCCCAGGATATAGAAAATTCGAGTTGTAGGATAAGCTCTATAA
ACAGcagaatctccataactcgaagatGCTCGAGGGACGGCGAACTTTGT
TCGAGtggttgaaaattcaaaatataggGTAAACTTTATAAGGTTTTGTT
ACCTGAAGGGACCATaagacttgttcgagttaaggagaaatTTGAGTTAC
AGAAGTTAGAAATAAAAACTTGTTATAATAGGACTGTTCCTATTTTTTTA
GACTCAACGGTATTCCCAACTCCGTCGGTCGGTACCCCCTGGATGACTAT
AAAATCAGATCAGCCAAACTTGAAAAGTCCTGTAAATACCCTTTTTTCAG
TGTACAAgctgaatttaattttgctttcaattttagTTCGGAGGAAACCC
AGTCTCAATGGCAATTGCAAGTGCATGCATGGAAGTGATACGAGATGAGA
AGTTACAAGAAAATGCTGAAACCGTGGGAGAATATACCATGGCCAAATTA
CgagaattaaaagaaaaacatgaaattatTGGTGATGTCAGGTTAGTGGA
GTTTTTTTTTGGATCACAAATACCCAGAGGAGGGTCTGACTGGGATAGGG
GTTTGACCTTAATCGAAAATTAGTCTGATTTGTACTTCTCTATCAATGAA
GTAAAtgcctgaagggctagaatcgaatctttatcatttctcaggcaaga
aaagtgGAGTCTTATAAAATATgcaccgtatttttgacgacggattgaat
caaACGATtgctttgttttcgagtgatatctttttcgaaatttaggtgta
aattttagtttcaatccgtcaTTTGTGTTGAACCAGGCGGACTGcgctag
gccgcgcaactttggtaggatttggtaggcttcaaatcctagcaaggaga
ttcgattctagcccatcgggcttatacttcattgttcTCGATGCTTCTTa
gttttctataagaaactttttgtaaatttgCAAGCACTCGGAagatttga
tttcaaaaagaattatctttgctttgaaaatttgcacactgAATGGATTA
AATCAATGAAAGAGTTCGATAAGAGTATCTTCACCTCTACCGTGACCACT
TTGCCTCGGCTCGCATGGTTGTCATACAAACGCAGGATTGGAAGTATCAT
TTTTCgccagaattttgaaaaatgtaatacacaaaaaaacaaagaatggc
tagattcaatccgtcatccgAAATACGACACAAATCTTAAGGGTTCTTTC
TTGCTATTGGCAAAGGTTGAAAATTCACCTCTAGCAGCCTCGACTCAAAT
TTAACCCAATGCTTTGACACTGTTACTTTAGACTCATCATTCATAATACA
TCTAATCTCCGTctgaaatttctttgaaaacttcaGCATCTACATTTTCT
TCACAAATCATACACAAATTCTCTTTATACTTCTAGGGGTGTTGGATTAT
TCTTGGGGATCGAGTTGGTGAAGAGCCGCCAAACTAAAGAACCAGCAACA
TCACAAGCCAAAAGAATAAGTTACTTGTAAGTAATTCTACACGTATTGTA
ACCATTGATTTCATAGCCATGAAGGGCTCTTGCataggaaatgaagccac
ttaggTTCCCACGTGGGTTTTTCGCAAATGCCAGCTTGAAAGTAATCGCT
AGATCCATCGGAAGATCCATCGCTAGATCCATCGGAAACAGAGATTTAAT
CTGTCATTTTAAATGCGGCGCAAATCTAAAAGctacactttttcttgctt
gagcaAGGTTGacgattcctctctagccccttcggggctttcAACTCAAC
TGTATTCTACATTCCAGACTGGAGCATATTTATACTACAACTCAGGGTGC
AAGGTTCATAGCATTAATGTTCAGTGGCATACAAAAGGATTTACATTCAT
TTGCCAAATGTTTTGAGATTGGTTAAGCGATGAAGGTTTTCGCAGGGACA
AGTTTTGTCATCCTCTACTCTAAAGATATTTTGGTCAGTTTTACTCTGAC
TAAGACCTCTGACCACCAAGGATTTAATAGGTTTGGGACATTCCCGTACT
TCATCTGGCCTAATAGTGTTTTAAAGTAACTGCAAATAAAATGCATGcta
tttaagattttgaaatgtaagtttaacttatttatttatccAGATTACGG
CAACGTGGCGTGTTGATCAGTGGCGATGGTCCAGGAAGAAATGTATTGAA
AGTGAAGCCACCTCTTTGTGTGACCAAGGACGACATGGACATGTTTGTTG
AACAATTGGATAAAGTATTGACAGAGTTTGAACGGGAACAACAAATGTGA
ATGAATTTGAAAGAGTATCAGAAACTCATCTTGAGAATGTATAGTAGACA
ATAGTTTAGTGACAAGAAAAAACTGTAAACTTTTTGTTTGACGAAAGGTT
TGTAAGTTGTAAATTATAAACTTCACCAATATTcagaggaattttttttt
cgaaatcgccGTGAGATTTCAGGTAAATCTCATTGAAAAGCTGCAATCGT
TTAACATTGCTTGGTAAAAAgctaaaatttcttttattacTCAATTAATT
GCCATAGCTTTGGGAAACCAGGAGAATTTTCTGTTGTTCGAATATTTCGA
ATTAGAGATCGTTGACTGTATGGCGAATCTTTAAACAAATTTAacctaaa
atattatttttaatagAATTAGCGTAAACGTAATCCAATCAGCTTTTAGT
AGTAAAGTCTTAaactctccataactcaaatTATTACGGGGTTACGGAGG
CCTAACTGTAAACTAACATGTAAAAAAATCGGTAGAAAAAAAGAGCTGGA
ACTCTTTTATTTCTCAGAAGAACAATTTTCTAAACGTAGTTAAGGGCAAA
CACACAGATTTTTGTGTAAAAGCTATCAATCTGTATTGAGGACTCAGATT
ACAACGAAAAACATGgagtttaaaaatataaaaaaagtatacGGTTTGTC
AAGGTTCCGCGATATCTAAGGAATTTAGTGTACTTTTACTAATTTGTTTT
TCGCAGCCTGCCAAAATTGCAACATTTTTCATAGAAGGCATAAAATTGGA
ATAGCCCTCACCTTTAAATAGCTAGCCCTGGTCTTGGATTCCAGCAAAGG
ggtttgatttcaaaaatactgatgtaaatattttaaaattaatatataaa
atgctttaaaaatcaatttgaataattttaacagatttgatataaacaaa
aaataaagattctTTGTATTATTTTATGTTCGATTATTtttaaaagacaa
taaaaaacttcaaaagtttGTAATCTTCACATAACTAATGTTGTCATGAT
TTACAATTCTAACCTTGGACcaatctccgagcagattctgatactccgCC
CATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003346XLOC_003346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005862-exon-sc0000061-1491911889:787906..787982TCONS_00005862-exon-sc0000061-1491911889:787906..787982Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1510915933:787906..787982TCONS_00005862-exon-sc0000061-1510915933:787906..787982Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1575043694:787906..787982TCONS_00005862-exon-sc0000061-1575043694:787906..787982Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1491911889:788571..788695TCONS_00005862-exon-sc0000061-1491911889:788571..788695Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1510915933:788571..788695TCONS_00005862-exon-sc0000061-1510915933:788571..788695Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1575043694:788571..788695TCONS_00005862-exon-sc0000061-1575043694:788571..788695Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1491911889:791642..791796TCONS_00005862-exon-sc0000061-1491911889:791642..791796Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1510915933:791642..791796TCONS_00005862-exon-sc0000061-1510915933:791642..791796Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1575043694:791642..791796TCONS_00005862-exon-sc0000061-1575043694:791642..791796Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1491911889:792692..792781TCONS_00005862-exon-sc0000061-1491911889:792692..792781Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1510915933:792692..792781TCONS_00005862-exon-sc0000061-1510915933:792692..792781Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1575043694:792692..792781TCONS_00005862-exon-sc0000061-1575043694:792692..792781Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1491911889:793399..794613TCONS_00005862-exon-sc0000061-1491911889:793399..794613Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1510915933:793399..794613TCONS_00005862-exon-sc0000061-1510915933:793399..794613Clytia hemisphaericaexon
TCONS_00005862-exon-sc0000061-1575043694:793399..794613TCONS_00005862-exon-sc0000061-1575043694:793399..794613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:787906..794613 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0319071	5.16834e-06	3.82233e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00005862 vs. Swiss-Prot (Human)
Match: AT2L1 (Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=ETNPPL PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.500e-68
Identity = 105/197 (53.30%), Postives = 147/197 (74.62%), Query Frame = 2 
Query:    2 ICVADEVQTGFARAGKHGFWAFERQG--VVPDIISIGKPMGNGHPVACVVTTEAVAQALEDTKICYFNTFGGNPVSMAIASACMEVIRDEKLQENAETVGEYTMAKLRELKEKHEIIGDVRGVGLFLGIELVKSRQTKEPATSQAKRISYLLRQRGVLISGDGPGRNVLKVKPPLCVTKDDMDMFVEQLDKVLTEFE 586
            + +ADEVQ GF R GKH FW+F+  G   VPDI+++GKPMGNGHPVACVVTT+ +A+A   + + YFNT+GGNPVS A+  A +++I +E LQ NA+ VG Y    L++ K KH +IGD+RG+GLF+GI+LVK    + PAT++A+ I Y ++++ VL+S DGP RNVLK+KPP+C T++D    V+QLD++LT  E
Sbjct:  242 VFIADEVQVGFGRVGKH-FWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLE 437
The following BLAST results are available for this feature:
BLAST of TCONS_00005862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT2L11.500e-6853.30Ethanolamine-phosphate phospho-lyase OS=Homo sapie... [more]
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