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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060029 ID=TCONS_00060029|Name=TCONS_00060029|organism=Clytia hemisphaerica|type=transcript|length=2625bpRun BLAST on NCBI protein sequence of TCONS_00060029-protein >TCONS_00060029-protein ID=TCONS_00060029-protein|Name=TCONS_00060029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=860bp MFSNLIRYVASYITGGSLNEEXSNLIRYVASYITGGSLNEEISSDEKDTGRun BLAST on NCBI transcript from alignment at scaffold_333:185411..226071- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060029 ID=TCONS_00060029|Name=TCONS_00060029|organism=Clytia hemisphaerica|type=transcript|length=40661bp|location=Sequence derived from alignment at scaffold_333:185411..226071- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_333:185411..226071- >TCONS_00060029 ID=TCONS_00060029|Name=TCONS_00060029|organism=Clytia hemisphaerica|type=CDS|length=36120bp|location=Sequence derived from alignment at scaffold_333:185411..226071- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060029 vs. Swiss-Prot (Human)
Match: M10L1 (RNA helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 2.922e-55 Identity = 181/662 (27.34%), Postives = 295/662 (44.56%), Query Frame = 3
Query: 354 QTLYGTVTSFFNTRGLINDEIYFSQEVIIGSDHPKVGDNVAVKASRSHKAGGWVATSVQ-ITALWDIDDDEETQAKPVKDN---IIGTVIKLYGNMVQIKATIDFQVPIRKFKTGYRPFNGDWVNIEIWNKGDEFQVSGIQLNDIISISPLREKKITG-TVTDIQSRNGVINSEVYFSFAICKRGTFY--KKGDKVSAMVIESKQTQGNWRAVYIEHIXXXXXXGEPRTAKDVSLRNIFNG---------ISITKELAFGDINLDERQKKTIFIRNQGQKPVTFQSLNLS------------------IPVPGFLF-----------------KLKNRGHRNSR----NNRDV---------------HMLS--------PNLILNPGEKRELPVEFIPSNIGKVEFNVTFHFDTFELVTLGKANIVDSIQQEMQREITPFKAPQTFFGKKVNAS----FADATSVIPGQRLVRKKKVFLPNKLARYPIPNHVKTCLMNLDGDIELLVPELAQPLHISNYTRKLSTLLYAEEIKMEAEMRQFDLFQVILRKSHEYLTLDVPGLAEGRPSLLLGDRVVV---QYHGQANSPTYEGFIHEIQAETILLKFDNHFHETYEHQYVDAQFHFNRTPLRRCHQAIEHAMTMGEETLFPSKLEEKEPLI 2084
+T+ G VT + + G+I+D IYFS + + VG V + + G A V+ ++ W+ DD P +IG V L I T F + G+ P GDWV E + G ++ S+ PLR K++ ++ + RNGV+ ++F+ K Y ++GD V+A+V+ES Q+ WRA+ + +K+ R A V F G I +T+ FG + + I+I N+G P S L+ PV F+ KN+ + S NNR + ++LS P ++ PG K + V N G+ + + F F + + N++ E + A + F KK+ +S A T V+ Q+ R + LP+ L +YPIP+ ++ C+ DI P LA+ L++SNY K STLL+ EEI E E++++++ +ILR++ + L L+VPGLAEGRPSL GD++++ +Y+G A Y ++ EI E + LK + F + Y + +D +F +NRT RRCH A+EH + +G + LFP ++ + P +
Sbjct: 38 KTVRGVVTRYCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWE--DDSRNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFS--LESVCEGFEPCKGDWVEAEYRIR------PGTWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRALCMTLVKR-------RDAAPVHEATHFYGTILLKNKGDIEVTQVTHFGTLKEGRSKTMVIWIENKGDIPQNLVSCKLAGWDKSKQFRFQMLDKDQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTSQMSESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGGLVPPGGKTFIVVICDGKNPGRCKELLLLCFSDFLIGRYLEVNVISG-------EESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQK--RNSRRQLPSFLPQYPIPDRLRKCVEQ-KIDILTFQPLLAELLNMSNYKEKFSTLLWLEEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIE--YISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFPEEIILQSPQV 670 HSP 2 Score: 189.504 bits (480), Expect = 2.720e-49 Identity = 89/168 (52.98%), Postives = 119/168 (70.83%), Query Frame = 3
Query: 2103 MVYFNKRLNERQRKAVHRIVCARGRPIPYVLFGPPGTGKSVTVVESILQVFKRISHSRILACAPSNSAADLIAERLHLSGHVSKRDMVRMNAFQRSKINLPECIEPYCTSDTDDLHFVSRHRIIIATCNMAGYLYSFDLKVGHFTHIFVDEAGQSTEPECMIPAGFAA 2606
M +FN LNE Q+ AV RI+ RP+PY+LFGPPGTGK+VT++E++LQV + SRIL CAPSNSAADL+ RLH S + MVR+NA R + + + ++PYC D +D+ SR RIII TC+ +G Y ++VGHFTH+FVDEAGQ++EPEC+IP G +
Sbjct: 738 MEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDAVKPYC-RDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMS 904 The following BLAST results are available for this feature:
BLAST of TCONS_00060029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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