TCONS_00060029-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060029-protein
Unique NameTCONS_00060029-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060029-protein ID=TCONS_00060029-protein|Name=TCONS_00060029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=860bp
MFSNLIRYVASYITGGSLNEEXSNLIRYVASYITGGSLNEEISSDEKDTG
GKFITDSNDTDETPEPDCNQTNKLEEEEDIVEPAEGNGQQTNNSSGNTSN
ALEQTLYGTVTSFFNTRGLINDEIYFSQEVIIGSDHPKVGDNVAVKASRS
HKAGGWVATSVQITALWDIDDDEETQAKPVKDNIIGTVIKLYGNMVQIKA
TIDFQVPIRKFKTGYRPFNGDWVNIEIWNKGDEFQVSGIQLNDIISISPL
REKKITGTVTDIQSRNGVINSEVYFSFAICKRGTFYKKGDKVSAMVIESK
QTQGNWRAVYIEHIKKEEKEGEPRTAKDVSLRNIFNGISITKELAFGDIN
LDERQKKTIFIRNQGQKPVTFQSLNLSIPVPGFLFKLKNRGHRNSRNNRD
VHMLSPNLILNPGEKRELPVEFIPSNIGKVEFNVTFHFDTFELVTLGKAN
IVDSIQQEMQREITPFKAPQTFFGKKVNASFADATSVIPGQRLVRKKKVF
LPNKLARYPIPNHVKTCLMNLDGDIELLVPELAQPLHISNYTRKLSTLLY
AEEIKMEAEMRQFDLFQVILRKSHEYLTLDVPGLAEGRPSLLLGDRVVVQ
YHGQANSPTYEGFIHEIQAETILLKFDNHFHETYEHQYVDAQFHFNRTPL
RRCHQAIEHAMTMGEETLFPSKLEEKEPLIQIAEDDMVYFNKRLNERQRK
AVHRIVCARGRPIPYVLFGPPGTGKSVTVVESILQVFKRISHSRILACAP
SNSAADLIAERLHLSGHVSKRDMVRMNAFQRSKINLPECIEPYCTSDTDD
LHFVSRHRIIIATCNMAGYLYSFDLKVGHFTHIFVDEAGQSTEPECMIPA
GFAAGSEESQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037771XLOC_037771Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060029TCONS_00060029Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025223S1-like_RNA-bd_dom
IPR013783Ig-like_fold
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 243..331
e-value: 0.14
score: 11.6
coord: 82..182
e-value: 0.2
score: 11.1
NoneNo IPR availablePFAMPF13086AAA_11coord: 802..850
e-value: 3.7E-8
score: 33.4
coord: 694..780
e-value: 2.6E-13
score: 50.3
NoneNo IPR availableGENE3D3.40.50.300coord: 690..858
e-value: 5.6E-19
score: 67.8
NoneNo IPR availableCDDcd00046DEXDccoord: 716..838
e-value: 7.30521E-5
score: 41.1688
IPR025223S1-like RNA binding domainPFAMPF14444S1-likecoord: 255..308
e-value: 2.8E-8
score: 33.6
coord: 105..158
e-value: 2.3E-9
score: 37.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 338..446
e-value: 9.7E-10
score: 38.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 690..850

Blast
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BLAST of TCONS_00060029-protein vs. Swiss-Prot (Human)
Match: M10L1 (RNA helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.766e-56
Identity = 181/662 (27.34%), Postives = 295/662 (44.56%), Query Frame = 0 
Query:  104 QTLYGTVTSFFNTRGLINDEIYFSQEVIIGSDHPKVGDNVAVKASRSHKAGGWVATSVQ-ITALWDIDDDEETQAKPVKDN---IIGTVIKLYGNMVQIKATIDFQVPIRKFKTGYRPFNGDWVNIEIWNKGDEFQVSGIQLNDIISISPLREKKITG-TVTDIQSRNGVINSEVYFSFAICKRGTFY--KKGDKVSAMVIESKQTQGNWRAVYIEHIKKEEKEGEPRTAKDVSLRNIFNG---------ISITKELAFGDINLDERQKKTIFIRNQGQKPVTFQSLNLS------------------IPVPGFLF-----------------KLKNRGHRNSR----NNRDV---------------HMLS--------PNLILNPGEKRELPVEFIPSNIGKVEFNVTFHFDTFELVTLGKANIVDSIQQEMQREITPFKAPQTFFGKKVNAS----FADATSVIPGQRLVRKKKVFLPNKLARYPIPNHVKTCLMNLDGDIELLVPELAQPLHISNYTRKLSTLLYAEEIKMEAEMRQFDLFQVILRKSHEYLTLDVPGLAEGRPSLLLGDRVVV---QYHGQANSPTYEGFIHEIQAETILLKFDNHFHETYEHQYVDAQFHFNRTPLRRCHQAIEHAMTMGEETLFPSKLEEKEPLI 680
            +T+ G VT + +  G+I+D IYFS + +       VG  V      +  + G  A  V+ ++  W+  DD      P       +IG V  L      I  T  F   +     G+ P  GDWV  E   +       G   ++  S+ PLR K++    ++ +  RNGV+   ++F+    K    Y  ++GD V+A+V+ES Q+   WRA+ +  +K+       R A  V     F G         I +T+   FG +     +   I+I N+G  P    S  L+                   PV  F+                    KN+  + S     NNR +               ++LS        P  ++ PG K  + V     N G+ +  +   F  F +    + N++         E +   A + F  KK+ +S     A  T V+  Q+  R  +  LP+ L +YPIP+ ++ C+     DI    P LA+ L++SNY  K STLL+ EEI  E E++++++  +ILR++ + L L+VPGLAEGRPSL  GD++++   +Y+G A    Y  ++ EI  E + LK +  F + Y  + +D +F +NRT  RRCH A+EH + +G + LFP ++  + P +
Sbjct:   38 KTVRGVVTRYCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWE--DDSRNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFS--LESVCEGFEPCKGDWVEAEYRIR------PGTWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRALCMTLVKR-------RDAAPVHEATHFYGTILLKNKGDIEVTQVTHFGTLKEGRSKTMVIWIENKGDIPQNLVSCKLAGWDKSKQFRFQMLDKDQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTSQMSESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGGLVPPGGKTFIVVICDGKNPGRCKELLLLCFSDFLIGRYLEVNVISG-------EESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQK--RNSRRQLPSFLPQYPIPDRLRKCVEQ-KIDILTFQPLLAELLNMSNYKEKFSTLLWLEEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIE--YISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFPEEIILQSPQV 670

HSP 2 Score: 189.889 bits (481), Expect = 1.550e-49
Identity = 89/168 (52.98%), Postives = 119/168 (70.83%), Query Frame = 0 
Query:  687 MVYFNKRLNERQRKAVHRIVCARGRPIPYVLFGPPGTGKSVTVVESILQVFKRISHSRILACAPSNSAADLIAERLHLSGHVSKRDMVRMNAFQRSKINLPECIEPYCTSDTDDLHFVSRHRIIIATCNMAGYLYSFDLKVGHFTHIFVDEAGQSTEPECMIPAGFAA 854
            M +FN  LNE Q+ AV RI+    RP+PY+LFGPPGTGK+VT++E++LQV   +  SRIL CAPSNSAADL+  RLH S  +    MVR+NA  R +  + + ++PYC  D +D+   SR RIII TC+ +G  Y   ++VGHFTH+FVDEAGQ++EPEC+IP G  +
Sbjct:  738 MEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDAVKPYC-RDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMS 904
The following BLAST results are available for this feature:
BLAST of TCONS_00060029-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M10L11.766e-5627.34RNA helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE... [more]
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