TCONS_00059994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059994
Unique NameTCONS_00059994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059994 ID=TCONS_00059994|Name=TCONS_00059994|organism=Clytia hemisphaerica|type=transcript|length=808bp
TGAGATTTTCGTTAAACGTGACACCAAGCAGTTTGAATGACGGAACTCGC
TCGATTATCATTTCGTTGTTTGATTttatctcaaaagtaaagtcgTGTCT
TCTTGCCATTTGACTGGTGGCAAAGAGCAtcgattttgtcttttttgcaT
TGAAGATTAAGTTTGAGTCGCGTGACCACTCCTCGATAACATTGAAATCG
TTCTGAACTTCTTGACTACATAGTTCAAGGTTGGCAGGTTTGGTGTGACG
ATAGATGCTGGTGTCGTCGGCATACTGAACACATTTGGCGTTGGTCTTAG
ATGCCATGTCGTGAACATAGACGTTAAAGAGGACGGGACCCAATATGCCC
AATATGCGGCAATTGCGGCACACCATTAGTGACCGTTAAGACGGGTGATC
AATTTGTACGTACTGTTGTCGACTACTGAGGTAGTTTGCAAGAATACGTA
AGGACTTCTTCGAGAAGTGGAGTGAATGAAGCTTTTTTATCAGAGTTTCA
AAGTCAACGGTGTCAAAAGCTTTCGAGAAATCGGCAAGAACAGCCAGTGT
GATCTCTCCGTGGTGCATAGCTTTCAGAatgtaatttttgattttaatac
aGTGCTACAGTGCAATGGCCCTTACGAAAGCCAGATTGGTATTGTGACAA
GAGTTCCTGGTGTtcaagaaagtttttcatttgtatcATGATGAGTTTCt
cgttcagccaaaagtagactagTAGTTAGTCTATATGGAAACTTGGTAAT
GCGTAATTCGTTTGGAATTTCCTTTCTTGAAAATCAGCAGGAACAATACA
GAAGAATT
Run BLAST on NCBI

protein sequence of TCONS_00059994-protein

>TCONS_00059994-protein ID=TCONS_00059994-protein|Name=TCONS_00059994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MVCRNCRILGILGPVLFNVYVHDMASKTNAKCVQYADDTSIYRHTKPANL
ELCSQEVQNDFNVIEEWSRDSNLIFNAKKTKSMLFATSQMARRHDFTFEI
KSNNEMIIERVPSFKLLGVTFNENL
Run BLAST on NCBI

transcript from alignment at scaffold_331:1260177..1260984

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059994 ID=TCONS_00059994|Name=TCONS_00059994|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at scaffold_331:1260177..1260984 (Clytia hemisphaerica)
AATTCTTCTGTATTGTTCCTGCTGATTTTCAAGAAAGGAAATTCCAAACG
AATTACGCATTACCAAGTTTCCATATAGACTAACTActagtctacttttg
gctgaacgaGAAACTCATCATgatacaaatgaaaaactttcttgaACACC
AGGAACTCTTGTCACAATACCAATCTGGCTTTCGTAAGGGCCATTGCACT
GTAGCACtgtattaaaatcaaaaattacatTCTGAAAGCTATGCACCACG
GAGAGATCACACTGGCTGTTCTTGCCGATTTCTCGAAAGCTTTTGACACC
GTTGACTTTGAAACTCTGATAAAAAAGCTTCATTCACTCCACTTCTCGAA
GAAGTCCTTACGTATTCTTGCAAACTACCTCAGTAGTCGACAACAGTACG
TACAAATTGATCACCCGTCTTAACGGTCACTAATGGTGTGCCGCAATTGC
CGCATATTGGGCATATTGGGTCCCGTCCTCTTTAACGTCTATGTTCACGA
CATGGCATCTAAGACCAACGCCAAATGTGTTCAGTATGCCGACGACACCA
GCATCTATCGTCACACCAAACCTGCCAACCTTGAACTATGTAGTCAAGAA
GTTCAGAACGATTTCAATGTTATCGAGGAGTGGTCACGCGACTCAAACTT
AATCTTCAAtgcaaaaaagacaaaatcgaTGCTCTTTGCCACCAGTCAAA
TGGCAAGAAGACAcgactttacttttgagataaAATCAAACAACGAAATG
ATAATCGAGCGAGTTCCGTCATTCAAACTGCTTGGTGTCACGTTTAACGA
AAATCTCA

Coding sequence (CDS) from alignment at scaffold_331:1260177..1260984

>TCONS_00059994 ID=TCONS_00059994|Name=TCONS_00059994|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_331:1260177..1260984 (Clytia hemisphaerica)
ATGGTGTGCCGCAATTGCCGCATATTGGGCATATTGGGTCCCGTCCTCTT
TAACGTCTATGTTCACGACATGGCATCTAAGACCAACGCCAAATGTGTTC
AGTATGCCGACGACACCAGCATCTATCGTCACACCAAACCTGCCAACCTT
GAACTATGTAGTCAAGAAGTTCAGAACGATTTCAATGTTATCGAGGAGTG
GTCACGCGACTCAAACTTAATCTTCAAtgcaaaaaagacaaaatcgaTGC
TCTTTGCCACCAGTCAAATGGCAAGAAGACAcgactttacttttgagata
aAATCAAACAACGAAATGATAATCGAGCGAGTTCCGTCATTCAAACTGCT
TGGTGTCACGTTTAACGAAAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037750XLOC_037750Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059994-proteinTCONS_00059994-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059994-exon-scaffold_331-1491911889:1260177..1260984TCONS_00059994-exon-scaffold_331-1491911889:1260177..1260984Clytia hemisphaericaexon
TCONS_00059994-exon-scaffold_331-1510915933:1260177..1260984TCONS_00059994-exon-scaffold_331-1510915933:1260177..1260984Clytia hemisphaericaexon
TCONS_00059994-exon-scaffold_331-1575043694:1260177..1260984TCONS_00059994-exon-scaffold_331-1575043694:1260177..1260984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1260177..1260984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22332	0	0	0.107747	0	0.129041	0	0	0	0	0	0	0.134127	0.125549	0.188713	0.240914	0	0	0.191446	0	0.19732	0	0.185894	0.461963	0.772651	0.216367	0	0	0.159775	0.287481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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