TCONS_00059979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059979
Unique NameTCONS_00059979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059979 ID=TCONS_00059979|Name=TCONS_00059979|organism=Clytia hemisphaerica|type=transcript|length=559bp
GTTCAATGatacaaaaaatgataaaattgtaACAACCTGTCAGTTTTTCA
AGCTTCCGTCCAAAGAATTTTCTAATTCTGCCATatctaatttattttta
tcaaaccaTTTAGCTTGGTCAATTTTCTTGGTCAATAACTATTGATTACA
CTATTTGAGTAGTAAAACCTTCCTAAACTTTTTTTCATTGTCATTTTCTT
TAGTTAAAAGCTGGCAAGCTTATGATTGAGATATTACAACATTTTCGAGT
ATGAAGACTTCTGAGTAGTCCAAATTTGTTTGCTACGTGCGTTACATTTT
GATCAGATTTTGTACTTGAAAGTAATCTTCTCGTTATAAAATATATGTTG
ATTTGGTAAGTGAAGGGTCCTAGATAGGATATAATGAATCAGATGccttt
aaaaagacaaaatagtGATATTTATGTAACAATATTTATAAAGTTCCAAA
TCTTTTCATATGTTAcagttttatcaaatttttgggaTTTAACTATGTTT
CTTATGTCTTAAATCCTAGTTTTAATTTCAGTTGGAAGTTTGAAGTAACA
GTTCACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_331:1047302..1047860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059979 ID=TCONS_00059979|Name=TCONS_00059979|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_331:1047302..1047860 (Clytia hemisphaerica)
TTTGTGAACTGTTACTTCAAACTTCCAACTGAAATTAAAACTAGGATTTA
AGACATAAGAAACATAGTTAAAtcccaaaaatttgataaaactgTAACAT
ATGAAAAGATTTGGAACTTTATAAATATTGTTACATAAATATCactattt
tgtctttttaaaggCATCTGATTCATTATATCCTATCTAGGACCCTTCAC
TTACCAAATCAACATATATTTTATAACGAGAAGATTACTTTCAAGTACAA
AATCTGATCAAAATGTAACGCACGTAGCAAACAAATTTGGACTACTCAGA
AGTCTTCATACTCGAAAATGTTGTAATATCTCAATCATAAGCTTGCCAGC
TTTTAACTAAAGAAAATGACAATGAAAAAAAGTTTAGGAAGGTTTTACTA
CTCAAATAGTGTAATCAATAGTTATTGACCAAGAAAATTGACCAAGCTAA
AtggtttgataaaaataaattagatATGGCAGAATTAGAAAATTCTTTGG
ACGGAAGCTTGAAAAACTGACAGGTTGTtacaattttatcattttttgta
tCATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037735XLOC_037735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059979-exon-scaffold_331-1491911889:1047302..1047860TCONS_00059979-exon-scaffold_331-1491911889:1047302..1047860Clytia hemisphaericaexon
TCONS_00059979-exon-scaffold_331-1510915933:1047302..1047860TCONS_00059979-exon-scaffold_331-1510915933:1047302..1047860Clytia hemisphaericaexon
TCONS_00059979-exon-scaffold_331-1575043694:1047302..1047860TCONS_00059979-exon-scaffold_331-1575043694:1047302..1047860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1047302..1047860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229067	0.372248	0.508899	0.880318	0	0	0	0	0	0.529022	0	0	0	0.280043	0	0	0	0	0.12622	0.112756	0	0	0.697339	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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