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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059975 ID=TCONS_00059975|Name=TCONS_00059975|organism=Clytia hemisphaerica|type=transcript|length=990bp
TGTAAATCTTGTGATCTTTTCGAAGGATTCAGAAAGTACTTGAAAAAAAC
ATGATGATCGAAAAATTCATTGGAGTTTAAGATGCAAAAGTACAAAATAC
CTGAAATTTAGTCAGGAGTTTATAATTAGCAAATTATTCTAATATAATTT
CACATGTAAATATTTCTTAGtaatattttctcaaaatacaCATTAAGAAT
ATGTATCTAACATGTTCCCCATTCTTCCTTTCAATTGCATTTTCACTATT
GATGCCTTCTGCTTGCCAGGAAAGAGACAGGCCTTTGACATACGCATCAT
CAGGTTGGAGCTCAACACTTTTGCTATGGTCTGTAGGGTGAAGCAAAAAT
ATTGTCTTAGCTATAGCTCTGTCACACAGCcaactttcacttttttgatt
gatagtaaattttccaaaagaataGGATGTTTCTTCTTTAGATATAGTCT
TGCTCTCGAACGTCTTCTCTATCAAAAGAGAGCAATTAGGTCGTATTTCT
TTAACACCCATCCGCGCAGtttgaaagtaaaaatatttttcattttcttc
tgtACCTGTTCGTGTTTCATAGTTCCAATTCTTATCCATCCGTTCTACGA
TATCTGTTAGCCAACTTTCATAACTACTATACAAGTTTGTAATATGTTTA
TCTTTAACGATGAATTTATCAATTCCTTCTCTCAAGCGTAATTCCATCAA
CACAAAACTTGTTGTTCCCTTTAACGATTCGATAGCAGCCCTCAACAAAa
ggatttctttattttgttcctctaacttctttttcagtttttcattttca
gttttcaaaccATCATTTTCGTTTTGCCCGATAGTAGAAACAGATCTCAT
CTCGgccattttttcaatttgttctAGCCAAAATAAATCCGAAAGAAACC
TGTCTTGATACTATATTGCTATAAAGTCAAGTGCAAGTTTGCTCTCGCTT
ACAAAAACATACGCGCTCATATCACGTGTCTATACTCttt Run BLAST on NCBI protein sequence of TCONS_00059975-protein >TCONS_00059975-protein ID=TCONS_00059975-protein|Name=TCONS_00059975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MAEMRSVSTIGQNENDGLKTENEKLKKKLEEQNKEILLLRAAIESLKGTT
SFVLMELRLREGIDKFIVKDKHITNLYSSYESWLTDIVERMDKNWNYETR
TGTEENEKYFYFQTARMGVKEIRPNCSLLIEKTFESKTISKEETSYSFGK
FTINQKSESWLCDRAIAKTIFLLHPTDHSKSVELQPDDAYVKGLSLSWQA
EGINSENAIERKNGEHVRYIFLMCILRKYY Run BLAST on NCBI transcript from alignment at scaffold_331:996346..997335 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059975 ID=TCONS_00059975|Name=TCONS_00059975|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at scaffold_331:996346..997335 (Clytia hemisphaerica)
aaaGAGTATAGACACGTGATATGAGCGCGTATGTTTTTGTAAGCGAGAGC
AAACTTGCACTTGACTTTATAGCAATATAGTATCAAGACAGGTTTCTTTC
GGATTTATTTTGGCTagaacaaattgaaaaaatggcCGAGATGAGATCTG
TTTCTACTATCGGGCAAAACGAAAATGATggtttgaaaactgaaaatgaa
aaactgaaaaagaagttagaggaacaaaataaagaaatcctTTTGTTGAG
GGCTGCTATCGAATCGTTAAAGGGAACAACAAGTTTTGTGTTGATGGAAT
TACGCTTGAGAGAAGGAATTGATAAATTCATCGTTAAAGATAAACATATT
ACAAACTTGTATAGTAGTTATGAAAGTTGGCTAACAGATATCGTAGAACG
GATGGATAAGAATTGGAACTATGAAACACGAACAGGTacagaagaaaatg
aaaaatatttttactttcaaaCTGCGCGGATGGGTGTTAAAGAAATACGA
CCTAATTGCTCTCTTTTGATAGAGAAGACGTTCGAGAGCAAGACTATATC
TAAAGAAGAAACATCCtattcttttggaaaatttactatcaatcaaaaaa
gtgaaagttgGCTGTGTGACAGAGCTATAGCTAAGACAATATTTTTGCTT
CACCCTACAGACCATAGCAAAAGTGTTGAGCTCCAACCTGATGATGCGTA
TGTCAAAGGCCTGTCTCTTTCCTGGCAAGCAGAAGGCATCAATAGTGAAA
ATGCAATTGAAAGGAAGAATGGGGAACATGTTAGATACATATTCTTAATG
tgtattttgagaaaatattaCTAAGAAATATTTACATGTGAAATTATATT
AGAATAATTTGCTAATTATAAACTCCTGACTAAATTTCAGGTATTTTGTA
CTTTTGCATCTTAAACTCCAATGAATTTTTCGATCATCATGTTTTTTTCA
AGTACTTTCTGAATCCTTCGAAAAGATCACAAGATTTACA Coding sequence (CDS) from alignment at scaffold_331:996346..997335 >TCONS_00059975 ID=TCONS_00059975|Name=TCONS_00059975|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_331:996346..997335 (Clytia hemisphaerica)
atggcCGAGATGAGATCTGTTTCTACTATCGGGCAAAACGAAAATGATgg
tttgaaaactgaaaatgaaaaactgaaaaagaagttagaggaacaaaata
aagaaatcctTTTGTTGAGGGCTGCTATCGAATCGTTAAAGGGAACAACA
AGTTTTGTGTTGATGGAATTACGCTTGAGAGAAGGAATTGATAAATTCAT
CGTTAAAGATAAACATATTACAAACTTGTATAGTAGTTATGAAAGTTGGC
TAACAGATATCGTAGAACGGATGGATAAGAATTGGAACTATGAAACACGA
ACAGGTacagaagaaaatgaaaaatatttttactttcaaaCTGCGCGGAT
GGGTGTTAAAGAAATACGACCTAATTGCTCTCTTTTGATAGAGAAGACGT
TCGAGAGCAAGACTATATCTAAAGAAGAAACATCCtattcttttggaaaa
tttactatcaatcaaaaaagtgaaagttgGCTGTGTGACAGAGCTATAGC
TAAGACAATATTTTTGCTTCACCCTACAGACCATAGCAAAAGTGTTGAGC
TCCAACCTGATGATGCGTATGTCAAAGGCCTGTCTCTTTCCTGGCAAGCA
GAAGGCATCAATAGTGAAAATGCAATTGAAAGGAAGAATGGGGAACATGT
TAGATACATATTCTTAATGtgtattttgagaaaatattaCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059975-exon-scaffold_331-1491911889:996346..997335 | TCONS_00059975-exon-scaffold_331-1491911889:996346..997335 | Clytia hemisphaerica | exon |
| TCONS_00059975-exon-scaffold_331-1510915933:996346..997335 | TCONS_00059975-exon-scaffold_331-1510915933:996346..997335 | Clytia hemisphaerica | exon |
| TCONS_00059975-exon-scaffold_331-1575043694:996346..997335 | TCONS_00059975-exon-scaffold_331-1575043694:996346..997335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:996346..997335 . |
Blast
The following BLAST results are available for this feature:
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