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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059971 ID=TCONS_00059971|Name=TCONS_00059971|organism=Clytia hemisphaerica|type=transcript|length=1879bp
TAATGATGCACTCGTTAATATTCTATTTTCACctgataatttttctttaa
aaaaaaattaatttcataaatCACAAGATTGTTACTTCCTCGTCATTTTC
TTCTTCCTGTTCTCCCTCGCTTTCACTACTTATTTTCGAATAAGGATGGC
AACTGGAACTCCTTCCTTGGTGGTTTATTGGACTTACGTTTTCGGTATTT
TTTTCGAGGCTTTTGATTCAATCGACGATCTTTGTCATTGTACCATTTAC
TCACTGCTTTTTCACAATACCGATCAATAAAGACTTTTAGTGTTGGCCCA
GACACTTTAATCCGAAGCAGGGATGTTAAATTACTTTCTGTCAAAGAATT
TCGCCAATCAGTTTTAACAATTCTCATTTGACTAAAAAACCTTTCAAGTG
AGGCATTTGAAGATGGCGCGCAAAAACACAGCTctgcaatcaaaaaaata
ttgctccATCCACGGTCGTCTTTGTAAGGATTGAGGAACTGCCATACCTT
GATGGGAGTGTGTATTTGGTGATTGAAATGTTTCATTGTGTACATGACTA
AGCTGATGTACTCGTCAGTAACTTTTTCGAGTGAAATGTTGGGTGATGTC
TTTTTAAGTATCTTTTCGAAGTGACCAAAGATATTCGATAAGCTCTCGAT
ATTGTTCTTAAGCATGAAGTCGACTGATTCGATCGTAATAGTcatttttt
caggcaaaatccATTTGCGAGAATCTACAACGCGACAAACATCGTACAAA
ATAGCATCGCCAGCAATGGGAGTACCAGTTACATCGTCACCATCATTTTC
GCCAGATAAAGCTGCAAACCTTTCTTTCAATGCTTCAAGTATTAGGTCGA
TATACTTTGTTGTATTATGTTTGATACTGTCGATCTCTCTTTTGTAATAC
TGAATAGTGATGTCTTGATATTTATAAactgtttttcctttttcatcttG
GTCTTCCTTTATGTTGGCAAAAACTTTTTGTAGGTTTGGTAGATTGAAAA
TCGCCTTTTCATAAGGAAATACGCCAGGAACATGTCATCTAACTCATCAA
CTAATTCAatgattccaaaattttccttttgagATTGAAGACTAAATTTC
AATGCTGGATTTAACAGATCAATAAATAGACCACATCGGAGTAAAACATT
TGCCTCAGTTAACAGTCTCCTCTTTCCTTCTAAAGTTGCTTTATCCGTCT
GTTTTGAGGTGTCAGCAATTACATTTTCAAAGTGCTGCAAATAAAGTCCG
AATTTGTCAACCAATCAAGACATGCTGCGTAGTACATGGGCAATCCAACG
TGTTCCAGTTGCCTTTGCTGGCTTGACACAATTATCAGCAAACTCGTACA
TTTCTTTCAATACTTTATGTAGCTTACGTAATTCTCTTAACTTTTTCGAT
GATTTCTGATAAAGGTAGAAAAGATTTGTCAAGCTTTTTTTAACAGGAGC
TAGAACATCATCAAGACTATCCTTTAATGCTAATTCAAGTCTATGTGACA
GACACCATACAAAAACAAGCCATTCAAGACCATCCTCTCGAAATTTAGCT
GCAAGTCCTGTTTTAATACCACTATTTACACTGGCACCAACGCTGGCTAA
AAAAACGATTTTATCCTTTAGTTCTGGCATTCCCACGTCATCAAAAGCCT
TTGTGAGAGCACTTTTGATTCCTGCTGCGTCCTGACTGGGAACATCTTTC
AAAGCAATGAATGAAAGAGTAGGCTCGAATTCAGTGAGGTCAACAAACAT
CAGGTACACACATTCCTTTTCAATGACAGCAGAATCAGTACTTCCATCGC
AAAATACAGAAAtgaagtttgaatttttcagttttttcttgACATCTTCC
TCGAATATTGTCTCACTAATGACATTTAC Run BLAST on NCBI protein sequence of TCONS_00059971-protein >TCONS_00059971-protein ID=TCONS_00059971-protein|Name=TCONS_00059971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
VNVISETIFEEDVKKKLKNSNFISVFCDGSTDSAVIEKECVYLMFVDLTE
FEPTLSFIALKDVPSQDAAGIKSALTKAFDDVGMPELKDKIVFLASVGAS
VNSGIKTGLAAKFREDGLEWLVFVWCLSHRLELALKDSLDDVLAPVKKSL
TNLFYLYQKSSKKLRELRKLHKVLKEMYEFADNCVKPAKATGTRWIAHVL
RSMS Run BLAST on NCBI transcript from alignment at scaffold_331:836503..838381 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059971 ID=TCONS_00059971|Name=TCONS_00059971|organism=Clytia hemisphaerica|type=transcript|length=1879bp|location=Sequence derived from alignment at scaffold_331:836503..838381 (Clytia hemisphaerica)
GTAAATGTCATTAGTGAGACAATATTCGAGGAAGATGTcaagaaaaaact
gaaaaattcaaacttcaTTTCTGTATTTTGCGATGGAAGTACTGATTCTG
CTGTCATTGAAAAGGAATGTGTGTACCTGATGTTTGTTGACCTCACTGAA
TTCGAGCCTACTCTTTCATTCATTGCTTTGAAAGATGTTCCCAGTCAGGA
CGCAGCAGGAATCAAAAGTGCTCTCACAAAGGCTTTTGATGACGTGGGAA
TGCCAGAACTAAAGGATAAAATCGTTTTTTTAGCCAGCGTTGGTGCCAGT
GTAAATAGTGGTATTAAAACAGGACTTGCAGCTAAATTTCGAGAGGATGG
TCTTGAATGGCTTGTTTTTGTATGGTGTCTGTCACATAGACTTGAATTAG
CATTAAAGGATAGTCTTGATGATGTTCTAGCTCCTGTTAAAAAAAGCTTG
ACAAATCTTTTCTACCTTTATCAGAAATCATCGAAAAAGTTAAGAGAATT
ACGTAAGCTACATAAAGTATTGAAAGAAATGTACGAGTTTGCTGATAATT
GTGTCAAGCCAGCAAAGGCAACTGGAACACGTTGGATTGCCCATGTACTA
CGCAGCATGTCTTGATTGGTTGACAAATTCGGACTTTATTTGCAGCACTT
TGAAAATGTAATTGCTGACACCTCAAAACAGACGGATAAAGCAACTTTAG
AAGGAAAGAGGAGACTGTTAACTGAGGCAAATGTTTTACTCCGATGTGGT
CTATTTATTGATCTGTTAAATCCAGCATTGAAATTTAGTCTTCAATctca
aaaggaaaattttggaatcatTGAATTAGTTGATGAGTTAGATGACATGT
TCCTGGCGTATTTCCTTATGAAAAGGCGATTTTCAATCTACCAAACCTAC
AAAAAGTTTTTGCCAACATAAAGGAAGACCaagatgaaaaaggaaaaaca
gtTTATAAATATCAAGACATCACTATTCAGTATTACAAAAGAGAGATCGA
CAGTATCAAACATAATACAACAAAGTATATCGACCTAATACTTGAAGCAT
TGAAAGAAAGGTTTGCAGCTTTATCTGGCGAAAATGATGGTGACGATGTA
ACTGGTACTCCCATTGCTGGCGATGCTATTTTGTACGATGTTTGTCGCGT
TGTAGATTCTCGCAAATggattttgcctgaaaaaatgACTATTACGATCG
AATCAGTCGACTTCATGCTTAAGAACAATATCGAGAGCTTATCGAATATC
TTTGGTCACTTCGAAAAGATACTTAAAAAGACATCACCCAACATTTCACT
CGAAAAAGTTACTGACGAGTACATCAGCTTAGTCATGTACACAATGAAAC
ATTTCAATCACCAAATACACACTCCCATCAAGGTATGGCAGTTCCTCAAT
CCTTACAAAGACGACCGTGGATggagcaatatttttttgattgcagAGCT
GTGTTTTTGCGCGCCATCTTCAAATGCCTCACTTGAAAGGTTTTTTAGTC
AAATGAGAATTGTTAAAACTGATTGGCGAAATTCTTTGACAGAAAGTAAT
TTAACATCCCTGCTTCGGATTAAAGTGTCTGGGCCAACACTAAAAGTCTT
TATTGATCGGTATTGTGAAAAAGCAGTGAGTAAATGGTACAATGACAAAG
ATCGTCGATTGAATCAAAAGCCTCGAAAAAAATACCGAAAACGTAAGTCC
AATAAACCACCAAGGAAGGAGTTCCAGTTGCCATCCTTATTCGAAAATAA
GTAGTGAAAGCGAGGGAGAACAGGAAGAAGAAAATGACGAGGAAGTAACA
ATCTTGTGatttatgaaattaatttttttttaaagaaaaattatcagGTG
AAAATAGAATATTAACGAGTGCATCATTA Coding sequence (CDS) from alignment at scaffold_331:836503..838381 >TCONS_00059971 ID=TCONS_00059971|Name=TCONS_00059971|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_331:836503..838381 (Clytia hemisphaerica)
GTAAATGTCATTAGTGAGACAATATTCGAGGAAGATGTcaagaaaaaact
gaaaaattcaaacttcaTTTCTGTATTTTGCGATGGAAGTACTGATTCTG
CTGTCATTGAAAAGGAATGTGTGTACCTGATGTTTGTTGACCTCACTGAA
TTCGAGCCTACTCTTTCATTCATTGCTTTGAAAGATGTTCCCAGTCAGGA
CGCAGCAGGAATCAAAAGTGCTCTCACAAAGGCTTTTGATGACGTGGGAA
TGCCAGAACTAAAGGATAAAATCGTTTTTTTAGCCAGCGTTGGTGCCAGT
GTAAATAGTGGTATTAAAACAGGACTTGCAGCTAAATTTCGAGAGGATGG
TCTTGAATGGCTTGTTTTTGTATGGTGTCTGTCACATAGACTTGAATTAG
CATTAAAGGATAGTCTTGATGATGTTCTAGCTCCTGTTAAAAAAAGCTTG
ACAAATCTTTTCTACCTTTATCAGAAATCATCGAAAAAGTTAAGAGAATT
ACGTAAGCTACATAAAGTATTGAAAGAAATGTACGAGTTTGCTGATAATT
GTGTCAAGCCAGCAAAGGCAACTGGAACACGTTGGATTGCCCATGTACTA
CGCAGCATGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059971-exon-scaffold_331-1491911889:836503..838381 | TCONS_00059971-exon-scaffold_331-1491911889:836503..838381 | Clytia hemisphaerica | exon |
| TCONS_00059971-exon-scaffold_331-1510915933:836503..838381 | TCONS_00059971-exon-scaffold_331-1510915933:836503..838381 | Clytia hemisphaerica | exon |
| TCONS_00059971-exon-scaffold_331-1575043694:836503..838381 | TCONS_00059971-exon-scaffold_331-1575043694:836503..838381 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:836503..838381 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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