TCONS_00059962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059962
Unique NameTCONS_00059962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059962 ID=TCONS_00059962|Name=TCONS_00059962|organism=Clytia hemisphaerica|type=transcript|length=673bp
TATCTTTGTTAAACTTGATGAAGATTGCTGCATTGATAACAGAATTCGTA
AGACCCAATAATATGCCAAAAAGTAACCAAAACTCCAGCAAATTTCTATT
GTAGAATGTACTAGTTTTATCATAAACGAAAAGGTGAAGTAAATTAACTA
CCAGGTAAATCGTGTAGAAGACAACCACGGTGAATAAGATTCTCTTAGTG
AGTGAAACCACGTTTACTCGAATATCTTCTAGTCTTGTTGCATTTGTTTC
GGCGCAGTGTTGATTTAGAGCTTTCACGGCTAAAATGTTTAATACAGCCA
TTGAAAAAACTACCACTCCATCAATAAGATATACGGTAAAGGAAAATATC
TTGTATGTCCCAAAAACAGTTCCAAAGCTAACCAAGCTGGCATTAAATAA
GGATATTATGATCACCAGAATAGCGCATCTGTTGATATTCTTTTTACACA
TCTTCGTCTTGTATTCTTGTAAATATTTGATTCGGGCATATCGATCGAAT
GCTAGTAAAGCGATTATAAAAGCAGATACATGACCAAAGAAATTGTTCAA
GAATTGACCTAAATTTTCTAGCCAACATATTTGGCGATCTTTAAAAGCAG
TTAATAATAGGATGTAGATAATTGGTGTTGTGAAAGAGATACATACATCA
GAAATACTCAAATACAACATGAT
Run BLAST on NCBI

protein sequence of TCONS_00059962-protein

>TCONS_00059962-protein ID=TCONS_00059962-protein|Name=TCONS_00059962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
IMLYLSISDVCISFTTPIIYILLLTAFKDRQICWLENLGQFLNNFFGHVS
AFIIALLAFDRYARIKYLQEYKTKMCKKNINRCAILVIIISLFNASLVSF
GTVFGTYKIFSFTVYLIDGVVVFSMAVLNILAVKALNQHCAETNATRLED
IRVNVVSLTKRILFTVVVFYTIYLVVNLLHLFVYDKTSTFYNRNLLEFWL
LFGILLGLTNSVINAAIFIKFNKD
Run BLAST on NCBI

transcript from alignment at scaffold_331:604931..605603

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059962 ID=TCONS_00059962|Name=TCONS_00059962|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_331:604931..605603 (Clytia hemisphaerica)
ATCATGTTGTATTTGAGTATTTCTGATGTATGTATCTCTTTCACAACACC
AATTATCTACATCCTATTATTAACTGCTTTTAAAGATCGCCAAATATGTT
GGCTAGAAAATTTAGGTCAATTCTTGAACAATTTCTTTGGTCATGTATCT
GCTTTTATAATCGCTTTACTAGCATTCGATCGATATGCCCGAATCAAATA
TTTACAAGAATACAAGACGAAGATGTGTAAAAAGAATATCAACAGATGCG
CTATTCTGGTGATCATAATATCCTTATTTAATGCCAGCTTGGTTAGCTTT
GGAACTGTTTTTGGGACATACAAGATATTTTCCTTTACCGTATATCTTAT
TGATGGAGTGGTAGTTTTTTCAATGGCTGTATTAAACATTTTAGCCGTGA
AAGCTCTAAATCAACACTGCGCCGAAACAAATGCAACAAGACTAGAAGAT
ATTCGAGTAAACGTGGTTTCACTCACTAAGAGAATCTTATTCACCGTGGT
TGTCTTCTACACGATTTACCTGGTAGTTAATTTACTTCACCTTTTCGTTT
ATGATAAAACTAGTACATTCTACAATAGAAATTTGCTGGAGTTTTGGTTA
CTTTTTGGCATATTATTGGGTCTTACGAATTCTGTTATCAATGCAGCAAT
CTTCATCAAGTTTAACAAAGATA

Coding sequence (CDS) from alignment at scaffold_331:604931..605603

>TCONS_00059962 ID=TCONS_00059962|Name=TCONS_00059962|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_331:604931..605603 (Clytia hemisphaerica)
ATCATGTTGTATTTGAGTATTTCTGATGTATGTATCTCTTTCACAACACC
AATTATCTACATCCTATTATTAACTGCTTTTAAAGATCGCCAAATATGTT
GGCTAGAAAATTTAGGTCAATTCTTGAACAATTTCTTTGGTCATGTATCT
GCTTTTATAATCGCTTTACTAGCATTCGATCGATATGCCCGAATCAAATA
TTTACAAGAATACAAGACGAAGATGTGTAAAAAGAATATCAACAGATGCG
CTATTCTGGTGATCATAATATCCTTATTTAATGCCAGCTTGGTTAGCTTT
GGAACTGTTTTTGGGACATACAAGATATTTTCCTTTACCGTATATCTTAT
TGATGGAGTGGTAGTTTTTTCAATGGCTGTATTAAACATTTTAGCCGTGA
AAGCTCTAAATCAACACTGCGCCGAAACAAATGCAACAAGACTAGAAGAT
ATTCGAGTAAACGTGGTTTCACTCACTAAGAGAATCTTATTCACCGTGGT
TGTCTTCTACACGATTTACCTGGTAGTTAATTTACTTCACCTTTTCGTTT
ATGATAAAACTAGTACATTCTACAATAGAAATTTGCTGGAGTTTTGGTTA
CTTTTTGGCATATTATTGGGTCTTACGAATTCTGTTATCAATGCAGCAAT
CTTCATCAAGTTTAACAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037718XLOC_037718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059962-exon-scaffold_331-1491911889:604931..605603TCONS_00059962-exon-scaffold_331-1491911889:604931..605603Clytia hemisphaericaexon
TCONS_00059962-exon-scaffold_331-1510915933:604931..605603TCONS_00059962-exon-scaffold_331-1510915933:604931..605603Clytia hemisphaericaexon
TCONS_00059962-exon-scaffold_331-1575043694:604931..605603TCONS_00059962-exon-scaffold_331-1575043694:604931..605603Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059962-proteinTCONS_00059962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:604931..605603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0865727	0	0	0	0.294907	0	0.193296	0	0	0	0.508516	0	0	0.0931859	0.172196	0.470655	0	0.595371	0.813191	1.08176	0.350673	0.557922	0.32837	0	0.209685	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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