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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059796 ID=TCONS_00059796|Name=TCONS_00059796|organism=Clytia hemisphaerica|type=transcript|length=227bp
GTTTCATGCGATGGTTATCGATCTTGAAGAATAAACATACTAAGATGTTT
CCGGTTACACCAATGATGAAAACACAACTGTATATCAGAATGGAGATGTA
ATCTACCGTGGATAGTTCTGTTGTCTTGGCAACCGGTTGACTTGAGTTGT
GGATGGTGGCCATATCAAATGGATACATCAATGCACTGGTCATATTATGG
ATTCAGAACATGACCAgataaaagagg Run BLAST on NCBI transcript from alignment at scaffold_331:421731..423419+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059796 ID=TCONS_00059796|Name=TCONS_00059796|organism=Clytia hemisphaerica|type=transcript|length=1689bp|location=Sequence derived from alignment at scaffold_331:421731..423419+ (Clytia hemisphaerica)
GTTTCATGCGATGGTTATCGATCTTGAAGAATAAACATACTAAGATGTTT
CCGGTTACACCAATGATGAAAACACAACTGTATATCAGAATGGAGATGTA
ATCTACCGTGGATAGTTCTGTTGTCTTGGCAACCGGTTGACTTGAGTTGT
GGATGGTGGCCATATCAAATGGATACATCAATGCACTGGTCATATTATGG
GTATGATTcattatcattttgattttattttttattttttcttcccTGCA
AAAAGAAGAAAGGCTTGTTACACTATTTAGgtactgaaaactttttgctt
CACTTTACGATTGATTCTCTCCTTTTGGTTgctaactttcattttcaaag
gtATTCTAACATGATTTCAGGCTCAATTCTTGAAATTAAACCATACAAAG
TTTAAGTCGAGTCCGATTGAAGTAACTCATCGTCATGCAGTCAAATTTTT
GGCTGACACTATAGCAAAGCTCTATGAAAGGGCGTTAAATCTGTAAGCTC
TGCAAAACTAGCTGGTTTGCATCAAAATCTATAATCTAGCAAAGCTTAAT
TGAAAGAGTATCATTTTTGGGTATTTAGAGGTACAATTTCCCTAgcttac
cttatcggggaagaaatgtcgggggaaagtgaccaaaatgcctcaaaatt
TCCCCCGACTAATTAAAACCCGacatttttccccgataaggtattaggtt
cccccgtttattaaaatttgaagagtTTTTAGCCCCCGCCCAGCTTCGCC
CACTGTTTGTTTCGATCCTCACTTATCAGGCACCTGAGGGTATCCTTTCA
AAGAATAAGTTCTCCAACTTGAGCACACCACCTGATCATGCATCCTCAAT
CCCCtgtgaataaaatgaaaatgttatAATGGCATTTCCACTTTACATCA
GCTCTTTTATATGTTGGGTTACACACGATAACGAGGTCATTAACCATAGA
AAAGATTGATTGGAATTTCATATACATACAAACATCTCAAACGCTTGGCT
ATTTTAAGTTGATTGAGGTGATTTATGACTTTCTAAACCAGACCACATCT
ATAACCATGATAGAGCcttaaactaaatttttttttcatattaatATCAC
CGTAATTATCGTAGAAAATAGCAATAACTATTATTGGCATACCTCTTTTA
TTAGATCAATATTGAAAGATAAGAGAggctcaaaaatgtcaaaaatgtca
aaaataacgattttgaAGGAACAGCACAAACCTTAGATTACAGAAGCAAG
AAAAGTAGCATGGGATACCTAGatctggttcaaaaaataagaatcGAATA
ACAACTAATAGTAGAGGTCACAATTAACTAATCTCAATctcaacaaaatt
ttgggtaaatttctCTTAAAAAACGTAagttcttttaaagaaaattgcgA
TTCGAATTCGCATGCATACGCACACGGAAGAACGAAACGGAAAATTTCAG
AACTGCACTAACGCACAAATCTCTTTTTACTTTCGATACCACATACCTGT
TCTACAAAGCGGTTCCACATTGTCCCCTTCAGTTTATATTGTCGCTGAGG
TTATTAAACAAAAAGTTCGAAAACTAAATTTGAATCTAATTTCACAGAAA
TATACATTCACTCCTtaggatttttcaaaatctggttTTCATTCAACTTT
GTATTTCTATAGATTCAGAACATGACCAgataaaagagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059796-exon-scaffold_331-1491911889:421731..421930 | TCONS_00059796-exon-scaffold_331-1491911889:421731..421930 | Clytia hemisphaerica | exon |
| TCONS_00059796-exon-scaffold_331-1510915933:421731..421930 | TCONS_00059796-exon-scaffold_331-1510915933:421731..421930 | Clytia hemisphaerica | exon |
| TCONS_00059796-exon-scaffold_331-1575043694:421731..421930 | TCONS_00059796-exon-scaffold_331-1575043694:421731..421930 | Clytia hemisphaerica | exon |
| TCONS_00059796-exon-scaffold_331-1491911889:423393..423419 | TCONS_00059796-exon-scaffold_331-1491911889:423393..423419 | Clytia hemisphaerica | exon |
| TCONS_00059796-exon-scaffold_331-1510915933:423393..423419 | TCONS_00059796-exon-scaffold_331-1510915933:423393..423419 | Clytia hemisphaerica | exon |
| TCONS_00059796-exon-scaffold_331-1575043694:423393..423419 | TCONS_00059796-exon-scaffold_331-1575043694:423393..423419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:421731..423419 + |
Blast
The following BLAST results are available for this feature:
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