|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059786 ID=TCONS_00059786|Name=TCONS_00059786|organism=Clytia hemisphaerica|type=transcript|length=2120bp
AAGTGTATTTTCAGGGAAATAAGATGTCTTTTTTCAATTACATTTTTAGA
TAGTAGACGGTTTCGACACAACGACGAAAAGTTGGAATTTTTACTCGCCA
TTTAGTCGTGATGTCAGCACTAACCCCCTAGACGAACAACTGAAAAGGAA
CACCGTTATGCATTTGAAACAAGGAATTTTTGCAATCGAAGATGAGAACT
TCGTGATTTCATTCGCACCGTCATGCGATTCTGAGTTATGTTGTTGTGAG
CTGCCATATCCAAAAGATTTGGATGGAAACTTCCTGTTCACCAAAGATAC
CCCGACCGTTTTATTTACTAAATTGGCAGCCATTAAATGTGATACCTATA
AACTGGTGTGTCAAAATAATAAATGCGTGTTGCGATGGGACGGCAGAGCA
GAGAACATTTATCGTATTTCCGGTCAAATTTGTATTGTAGAGGAACTGCT
GTGGAATTTTATCGATAGTGTAATTTTGACGAAGGCGAACTTTTCATCGT
TTTGCAATCTCGTGGACATCGATTATACAAGAAATGGCTCTTCCCGTAAA
TTTGTCTCACCGAAAACATTTTCCAAGGCGTTTTTTTCATGGGCATCCCA
CCAGCCAAGAGAATTTAGGCGAGGTTGTAATTGGTGCGGAAGTAATCCAA
ATATTCTTGCTTGCGATGGAACGAAGATTGGAATAATGCAAATCAATACA
TCGATTGATCCGATCGAAAAAACAAATGGCATGAAAATCACAACGACTGA
ACGTCGAATGGATCGTTGTTTTCTCTCCTACCCAGATAGAGTTGATGGTC
AAACGGTGGACCAGcacaaagaaaaagagaagaaCGTACGTGACAGTCGG
TTATTTCTTCGTTATATAACGAAAAAGAAAAGCACACAACagaaaaagaa
atcgaaaaaaaaggaCAATAACCCCAAAGAATTAAACGAcctaaatgaaa
ttgaatttgagtCATACCGTGTGAAATTGTTGGATGTATTTCCTAAAGAG
TGTACCTCTCTTTTAACTCGTTACATGAATAGTGACATGACTACCATTCA
AAAAGAGTGTGCCAGACAAATATTTTATCTTCTTTCTTATGAAGCACCTA
TCCGTGCCTTCTTGCCGTCTGTTTTATCTTCAAGCCTTGTCAGCGTATTA
GATCTTCCAACGATTGATAACGTAACaatgttcaattttattttggaaTG
TAAGAAATACAATCCAGCTCTTGGAGAGTTTatcaaaagtttttacgatG
GGTCAGTCATTCACTCTGATGTCAAATCTCTTCTTCGTTACTTGTGCGTG
AGATTGAGAGATAGTGAAAGTTTGTACACGCTTGCTGAACCAGCTGTAGA
GATTCCCGACAGCTACAATCCTTCGCGTCTTGGAAGGTTCTATTACTTTT
CGGAAACAGGACAGCAGATCCGGACAAATCGCGAGTTTTCTgtggaaaaa
aagaacgaaaccaGTTCAACATgttccaagtattatcccacaGTAGCGAA
GAGAGGCTctacatttctttttttatggtTTTGTCCCGCGCATGGCCATT
GCTACGGTGGACATATGGTTAATGGCAGCGAGGGTCGTAAAGACGCCATG
TGTTCTCTCTACACTCATCTTCCACAGCCacctgaaataattttttacga
TAACGCTTGCCAATTAGAAGAGTACAGTCTAAATCGTGAAGCAGATTTCT
TTCGAATAACCCGGTTTTACCATGATCATTTCCATGGTTTTGCGCACAAG
TGCTCGTGTATGTACAGTTGCATGGGTTTGGAAGGCATGGGTGCATTGAA
CACAAGCATCTGTGAACAATTCAATGCATTTCTTCAATGCATTAAATCTG
CAGGAAAGCATATGTCTCAGgatcattttatgtttttttgtcaattcatg
ATCGATATATGGAATACCAAAAAGATGGACActgtgcaaaaaaaattcaa
atcagcTTTGAATGCATCACAATAAAACAATGTAtatttttcacttgttt
ttcaGACCTTTTTTGGAGTCATCTTCTTCTAGTGTACTAAAATTTCTATA
ATTGAccattttatttttcgattatcataaagaatttttcactttttctt
caatattttatatatttacc Run BLAST on NCBI protein sequence of TCONS_00059786-protein >TCONS_00059786-protein ID=TCONS_00059786-protein|Name=TCONS_00059786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp
MHLKQGIFAIEDENFVISFAPSCDSELCCCELPYPKDLDGNFLFTKDTPT
VLFTKLAAIKCDTYKLVCQNNKCVLRWDGRAENIYRISGQICIVEELLWN
FIDSVILTKANFSSFCNLVDIDYTRNGSSRKFVSPKTFSKAFFSWASHQP
REFRRGCNWCGSNPNILACDGTKIGIMQINTSIDPIEKTNGMKITTTERR
MDRCFLSYPDRVDGQTVDQHKEKEKNVRDSRLFLRYITKKKSTQQKKKSK
KKDNNPKELNDLNEIEFESYRVKLLDVFPKECTSLLTRYMNSDMTTIQKE
CARQIFYLLSYEAPIRAFLPSVLSSSLVSVLDLPTIDNVTMFNFILECKK
YNPALGEFIKSFYDGSVIHSDVKSLLRYLCVRLRDSESLYTLAEPAVEIP
DSYNPSRLGRFYYFSETGQQIRTNREFSVEKKNETSSTCSKYYPTVAKRG
STFLFLWFCPAHGHCYGGHMVNGSEGRKDAMCSLYTHLPQPPEIIFYDNA
CQLEEYSLNREADFFRITRFYHDHFHGFAHKCSCMYSCMGLEGMGALNTS
ICEQFNAFLQCIKSAGKHMSQDHFMFFCQFMIDIWNTKKMDTVQKKFKSA
LNASQ Run BLAST on NCBI transcript from alignment at scaffold_331:208011..210389+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059786 ID=TCONS_00059786|Name=TCONS_00059786|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_331:208011..210389+ (Clytia hemisphaerica)
AAGTGTATTTTCAGGGAAATAAGATGTCTTTTTTCAATTACATTTTTAGA
TAGTAGACGGTTTCGACACAACGACGAAAAGTTGGAATTTTTACTCGCCA
TTTAGTCGTGATGTCAGCACTAACCCCCTAGACGAACAACTGAAAAGGAA
CACCGTTATGCATTTGAAACAAGGAATTTTTGCAATCGAAGATGAGAACT
TCGTGATTTCATTCGCACCGTCATGCGATTCTGAGTTATGTTGTTGTGAG
GTATGAATTCTCTTAGTTCTCTTTCTAGAATAGAAATCTCACAGGGGGCC
ACACGATCATAAATATACcgtaattttgaccaaaaataatcatttctgAG
GTGTAGTATTAATAATAAGAGGATATGATTTGCTTGAATCATTTTATCGC
GAAATTACGGTAATCCTCAGAAATAGTTTTTTGTAGTGTTTGCATTTTAT
TATCAGATGTTAAAAAAAGAATCTCTTTTTAATAATTGCTATCATATTTA
ATATTTTAGCTGCCATATCCAAAAGATTTGGATGGAAACTTCCTGTTCAC
CAAAGATACCCCGACCGTTTTATTTACTAAATTGGCAGCCATTAAATGTG
ATACCTATAAACTGGTGTGTCAAAATAATAAATGCGTGTTGCGATGGGAC
GGCAGAGCAGAGAACATTTATCGTATTTCCGGTCAAATTTGTATTGTAGA
GGAACTGCTGTGGAATTTTATCGATAGTGTAATTTTGACGAAGGCGAACT
TTTCATCGTTTTGCAATCTCGTGGACATCGATTATACAAGAAATGGCTCT
TCCCGTAAATTTGTCTCACCGAAAACATTTTCCAAGGCGTTTTTTTCATG
GGCATCCCACCAGCCAAGAGAATTTAGGCGAGGTTGTAATTGGTGCGGAA
GTAATCCAAATATTCTTGCTTGCGATGGAACGAAGATTGGAATAATGCAA
ATCAATACATCGATTGATCCGATCGAAAAAACAAATGGCATGAAAATCAC
AACGACTGAACGTCGAATGGATCGTTGTTTTCTCTCCTACCCAGATAGAG
TTGATGGTCAAACGGTGGACCAGcacaaagaaaaagagaagaaCGTACGT
GACAGTCGGTTATTTCTTCGTTATATAACGAAAAAGAAAAGCACACAACa
gaaaaagaaatcgaaaaaaaaggaCAATAACCCCAAAGAATTAAACGAcc
taaatgaaattgaatttgagtCATACCGTGTGAAATTGTTGGATGTATTT
CCTAAAGAGTGTACCTCTCTTTTAACTCGTTACATGAATAGTGACATGAC
TACCATTCAAAAAGAGTGTGCCAGACAAATATTTTATCTTCTTTCTTATG
AAGCACCTATCCGTGCCTTCTTGCCGTCTGTTTTATCTTCAAGCCTTGTC
AGCGTATTAGATCTTCCAACGATTGATAACGTAACaatgttcaattttat
tttggaaTGTAAGAAATACAATCCAGCTCTTGGAGAGTTTatcaaaagtt
tttacgatGGGTCAGTCATTCACTCTGATGTCAAATCTCTTCTTCGTTAC
TTGTGCGTGAGATTGAGAGATAGTGAAAGTTTGTACACGCTTGCTGAACC
AGCTGTAGAGATTCCCGACAGCTACAATCCTTCGCGTCTTGGAAGGTTCT
ATTACTTTTCGGAAACAGGACAGCAGATCCGGACAAATCGCGAGTTTTCT
gtggaaaaaaagaacgaaaccaGTTCAACATgttccaagtattatcccac
aGTAGCGAAGAGAGGCTctacatttctttttttatggtTTTGTCCCGCGC
ATGGCCATTGCTACGGTGGACATATGGTTAATGGCAGCGAGGGTCGTAAA
GACGCCATGTGTTCTCTCTACACTCATCTTCCACAGCCacctgaaataat
tttttacgaTAACGCTTGCCAATTAGAAGAGTACAGTCTAAATCGTGAAG
CAGATTTCTTTCGAATAACCCGGTTTTACCATGATCATTTCCATGGTTTT
GCGCACAAGTGCTCGTGTATGTACAGTTGCATGGGTTTGGAAGGCATGGG
TGCATTGAACACAAGCATCTGTGAACAATTCAATGCATTTCTTCAATGCA
TTAAATCTGCAGGAAAGCATATGTCTCAGgatcattttatgtttttttgt
caattcatgATCGATATATGGAATACCAAAAAGATGGACActgtgcaaaa
aaaattcaaatcagcTTTGAATGCATCACAATAAAACAATGTAtattttt
cacttgtttttcaGACCTTTTTTGGAGTCATCTTCTTCTAGTGTACTAAA
ATTTCTATAATTGAccattttatttttcgattatcataaagaatttttca
ctttttcttcaatattttatatatttacc Coding sequence (CDS) from alignment at scaffold_331:208011..210389+ >TCONS_00059786 ID=TCONS_00059786|Name=TCONS_00059786|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_331:208011..210389+ (Clytia hemisphaerica)
ATGCATTTGAAACAAGGAATTTTTGCAATCGAAGATGAGAACTTCGTGAT
TTCATTCGCACCGTCATGCGATTCTGAGTTATGTTGTTGTGAGCTGCCAT
ATCCAAAAGATTTGGATGGAAACTTCCTGTTCACCAAAGATACCCCGACC
GTTTTATTTACTAAATTGGCAGCCATTAAATGTGATACCTATAAACTGGT
GTGTCAAAATAATAAATGCGTGTTGCGATGGGACGGCAGAGCAGAGAACA
TTTATCGTATTTCCGGTCAAATTTGTATTGTAGAGGAACTGCTGTGGAAT
TTTATCGATAGTGTAATTTTGACGAAGGCGAACTTTTCATCGTTTTGCAA
TCTCGTGGACATCGATTATACAAGAAATGGCTCTTCCCGTAAATTTGTCT
CACCGAAAACATTTTCCAAGGCGTTTTTTTCATGGGCATCCCACCAGCCA
AGAGAATTTAGGCGAGGTTGTAATTGGTGCGGAAGTAATCCAAATATTCT
TGCTTGCGATGGAACGAAGATTGGAATAATGCAAATCAATACATCGATTG
ATCCGATCGAAAAAACAAATGGCATGAAAATCACAACGACTGAACGTCGA
ATGGATCGTTGTTTTCTCTCCTACCCAGATAGAGTTGATGGTCAAACGGT
GGACCAGcacaaagaaaaagagaagaaCGTACGTGACAGTCGGTTATTTC
TTCGTTATATAACGAAAAAGAAAAGCACACAACagaaaaagaaatcgaaa
aaaaaggaCAATAACCCCAAAGAATTAAACGAcctaaatgaaattgaatt
tgagtCATACCGTGTGAAATTGTTGGATGTATTTCCTAAAGAGTGTACCT
CTCTTTTAACTCGTTACATGAATAGTGACATGACTACCATTCAAAAAGAG
TGTGCCAGACAAATATTTTATCTTCTTTCTTATGAAGCACCTATCCGTGC
CTTCTTGCCGTCTGTTTTATCTTCAAGCCTTGTCAGCGTATTAGATCTTC
CAACGATTGATAACGTAACaatgttcaattttattttggaaTGTAAGAAA
TACAATCCAGCTCTTGGAGAGTTTatcaaaagtttttacgatGGGTCAGT
CATTCACTCTGATGTCAAATCTCTTCTTCGTTACTTGTGCGTGAGATTGA
GAGATAGTGAAAGTTTGTACACGCTTGCTGAACCAGCTGTAGAGATTCCC
GACAGCTACAATCCTTCGCGTCTTGGAAGGTTCTATTACTTTTCGGAAAC
AGGACAGCAGATCCGGACAAATCGCGAGTTTTCTgtggaaaaaaagaacg
aaaccaGTTCAACATgttccaagtattatcccacaGTAGCGAAGAGAGGC
TctacatttctttttttatggtTTTGTCCCGCGCATGGCCATTGCTACGG
TGGACATATGGTTAATGGCAGCGAGGGTCGTAAAGACGCCATGTGTTCTC
TCTACACTCATCTTCCACAGCCacctgaaataattttttacgaTAACGCT
TGCCAATTAGAAGAGTACAGTCTAAATCGTGAAGCAGATTTCTTTCGAAT
AACCCGGTTTTACCATGATCATTTCCATGGTTTTGCGCACAAGTGCTCGT
GTATGTACAGTTGCATGGGTTTGGAAGGCATGGGTGCATTGAACACAAGC
ATCTGTGAACAATTCAATGCATTTCTTCAATGCATTAAATCTGCAGGAAA
GCATATGTCTCAGgatcattttatgtttttttgtcaattcatgATCGATA
TATGGAATACCAAAAAGATGGACActgtgcaaaaaaaattcaaatcagcT
TTGAATGCATCACAATAAATGCATTTGAAACAAGGAATTTTTGCAATCGA
AGATGAGAACTTCGTGATTTCATTCGCACCGTCATGCGATTCTGAGTTAT
GTTGTTGTGAGCTGCCATATCCAAAAGATTTGGATGGAAACTTCCTGTTC
ACCAAAGATACCCCGACCGTTTTATTTACTAAATTGGCAGCCATTAAATG
TGATACCTATAAACTGGTGTGTCAAAATAATAAATGCGTGTTGCGATGGG
ACGGCAGAGCAGAGAACATTTATCGTATTTCCGGTCAAATTTGTATTGTA
GAGGAACTGCTGTGGAATTTTATCGATAGTGTAATTTTGACGAAGGCGAA
CTTTTCATCGTTTTGCAATCTCGTGGACATCGATTATACAAGAAATGGCT
CTTCCCGTAAATTTGTCTCACCGAAAACATTTTCCAAGGCGTTTTTTTCA
TGGGCATCCCACCAGCCAAGAGAATTTAGGCGAGGTTGTAATTGGTGCGG
AAGTAATCCAAATATTCTTGCTTGCGATGGAACGAAGATTGGAATAATGC
AAATCAATACATCGATTGATCCGATCGAAAAAACAAATGGCATGAAAATC
ACAACGACTGAACGTCGAATGGATCGTTGTTTTCTCTCCTACCCAGATAG
AGTTGATGGTCAAACGGTGGACCAGcacaaagaaaaagagaagaaCGTAC
GTGACAGTCGGTTATTTCTTCGTTATATAACGAAAAAGAAAAGCACACAA
CagaaaaagaaatcgaaaaaaaaggaCAATAACCCCAAAGAATTAAACGA
cctaaatgaaattgaatttgagtCATACCGTGTGAAATTGTTGGATGTAT
TTCCTAAAGAGTGTACCTCTCTTTTAACTCGTTACATGAATAGTGACATG
ACTACCATTCAAAAAGAGTGTGCCAGACAAATATTTTATCTTCTTTCTTA
TGAAGCACCTATCCGTGCCTTCTTGCCGTCTGTTTTATCTTCAAGCCTTG
TCAGCGTATTAGATCTTCCAACGATTGATAACGTAACaatgttcaatttt
attttggaaTGTAAGAAATACAATCCAGCTCTTGGAGAGTTTatcaaaag
tttttacgatGGGTCAGTCATTCACTCTGATGTCAAATCTCTTCTTCGTT
ACTTGTGCGTGAGATTGAGAGATAGTGAAAGTTTGTACACGCTTGCTGAA
CCAGCTGTAGAGATTCCCGACAGCTACAATCCTTCGCGTCTTGGAAGGTT
CTATTACTTTTCGGAAACAGGACAGCAGATCCGGACAAATCGCGAGTTTT
CTgtggaaaaaaagaacgaaaccaGTTCAACATgttccaagtattatccc
acaGTAGCGAAGAGAGGCTctacatttctttttttatggtTTTGTCCCGC
GCATGGCCATTGCTACGGTGGACATATGGTTAATGGCAGCGAGGGTCGTA
AAGACGCCATGTGTTCTCTCTACACTCATCTTCCACAGCCacctgaaata
attttttacgaTAACGCTTGCCAATTAGAAGAGTACAGTCTAAATCGTGA
AGCAGATTTCTTTCGAATAACCCGGTTTTACCATGATCATTTCCATGGTT
TTGCGCACAAGTGCTCGTGTATGTACAGTTGCATGGGTTTGGAAGGCATG
GGTGCATTGAACACAAGCATCTGTGAACAATTCAATGCATTTCTTCAATG
CATTAAATCTGCAGGAAAGCATATGTCTCAGgatcattttatgttttttt
gtcaattcatgATCGATATATGGAATACCAAAAAGATGGACActgtgcaa
aaaaaattcaaatcagcTTTGAATGCATCACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059786-exon-scaffold_331-1491911889:208011..208260 | TCONS_00059786-exon-scaffold_331-1491911889:208011..208260 | Clytia hemisphaerica | exon |
| TCONS_00059786-exon-scaffold_331-1510915933:208011..208260 | TCONS_00059786-exon-scaffold_331-1510915933:208011..208260 | Clytia hemisphaerica | exon |
| TCONS_00059786-exon-scaffold_331-1575043694:208011..208260 | TCONS_00059786-exon-scaffold_331-1575043694:208011..208260 | Clytia hemisphaerica | exon |
| TCONS_00059786-exon-scaffold_331-1491911889:208520..210389 | TCONS_00059786-exon-scaffold_331-1491911889:208520..210389 | Clytia hemisphaerica | exon |
| TCONS_00059786-exon-scaffold_331-1510915933:208520..210389 | TCONS_00059786-exon-scaffold_331-1510915933:208520..210389 | Clytia hemisphaerica | exon |
| TCONS_00059786-exon-scaffold_331-1575043694:208520..210389 | TCONS_00059786-exon-scaffold_331-1575043694:208520..210389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:208011..210389 + |
Blast
The following BLAST results are available for this feature:
|
