TCONS_00059773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059773
Unique NameTCONS_00059773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059773 ID=TCONS_00059773|Name=TCONS_00059773|organism=Clytia hemisphaerica|type=transcript|length=627bp
AAAGAGGGGAAATGGAGCAAGTTATCATAGCCGCATTATGCTGGACTCTA
ATGCATTTGTCTATAGAGAAGATATTTGGTtctaaatgggtcattgttac
aTACGGTATATTCGGTTGGACTGTGCCACGATTTATCGAGTATTATTTCT
ATCGCAATCCAGGACAGTTAGATTTCAACCGATGTGGAGAAGATGGTTtg
actgaatttgaaagaaaagttcTCATTTATGCTTCGgggtattttctttt
tgatgttttcaatggCGTTCGAATGCGTGAAGGTTTCATATGGCAAGTTC
ATCACTCTGTATCTTTCTTGGTTGTGGCTTCACCGTTATATTATGAAAAA
TGTGCTTTCGAGTTGTTCTTGTGCTTATGGGTGGGCGAATTCACCTCACT
ATTCGCATTTTGGATTTTCCGTTACGAAAAGGAGCCTGAAATATACAACA
GTAAACCAATGTTGGTTGTGAAAATCGTTTATTTCACTTTGTTTATGACT
TTACGATTTGGTGTTGGTTCTTATGCGTTGTGGAGATTTTTAAATTCCCC
AGACACTTTGTTTATCATCAAATTGGGATGTTTGTTGATGACGGTTTTTA
ATTGTGTCATCGTTAAACAAGCAATGG
Run BLAST on NCBI

protein sequence of TCONS_00059773-protein

>TCONS_00059773-protein ID=TCONS_00059773-protein|Name=TCONS_00059773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
RGEMEQVIIAALCWTLMHLSIEKIFGSKWVIVTYGIFGWTVPRFIEYYFY
RNPGQLDFNRCGEDGLTEFERKVLIYASGYFLFDVFNGVRMREGFIWQVH
HSVSFLVVASPLYYEKCAFELFLCLWVGEFTSLFAFWIFRYEKEPEIYNS
KPMLVVKIVYFTLFMTLRFGVGSYALWRFLNSPDTLFIIKLGCLLMTVFN
CVIVKQAM
Run BLAST on NCBI

transcript from alignment at scaffold_330:436638..437264

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059773 ID=TCONS_00059773|Name=TCONS_00059773|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at scaffold_330:436638..437264 (Clytia hemisphaerica)
CCATTGCTTGTTTAACGATGACACAATTAAAAACCGTCATCAACAAACAT
CCCAATTTGATGATAAACAAAGTGTCTGGGGAATTTAAAAATCTCCACAA
CGCATAAGAACCAACACCAAATCGTAAAGTCATAAACAAAGTGAAATAAA
CGATTTTCACAACCAACATTGGTTTACTGTTGTATATTTCAGGCTCCTTT
TCGTAACGGAAAATCCAAAATGCGAATAGTGAGGTGAATTCGCCCACCCA
TAAGCACAAGAACAACTCGAAAGCACATTTTTCATAATATAACGGTGAAG
CCACAACCAAGAAAGATACAGAGTGATGAACTTGCCATATGAAACCTTCA
CGCATTCGAACGccattgaaaacatcaaaaagaaaatacccCGAAGCATA
AATGAgaacttttctttcaaattcagtcaAACCATCTTCTCCACATCGGT
TGAAATCTAACTGTCCTGGATTGCGATAGAAATAATACTCGATAAATCGT
GGCACAGTCCAACCGAATATACCGTAtgtaacaatgacccatttagaACC
AAATATCTTCTCTATAGACAAATGCATTAGAGTCCAGCATAATGCGGCTA
TGATAACTTGCTCCATTTCCCCTCTTT

Coding sequence (CDS) from alignment at scaffold_330:436638..437264

>TCONS_00059773 ID=TCONS_00059773|Name=TCONS_00059773|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_330:436638..437264 (Clytia hemisphaerica)
CATTGCTTGTTTAACGATGACACAATTAAAAACCGTCATCAACAAACATC
CCAATTTGATGATAAACAAAGTGTCTGGGGAATTTAAAAATCTCCACAAC
GCATAAGAACCAACACCAAATCGTAAAGTCATAAACAAAGTGAAATAAAC
GATTTTCACAACCAACATTGGTTTACTGTTGTATATTTCAGGCTCCTTTT
CGTAACGGAAAATCCAAAATGCGAATAGTGAGGTGAATTCGCCCACCCAT
AAGCACAAGAACAACTCGAAAGCACATTTTTCATAATATAACGGTGAAGC
CACAACCAAGAAAGATACAGAGTGATGAACTTGCCATATGAAACCTTCAC
GCATTCGAACGccattgaaaacatcaaaaagaaaatacccCGAAGCATAA
ATGAgaacttttctttcaaattcagtcaAACCATCTTCTCCACATCGGTT
GAAATCTAACTGTCCTGGATTGCGATAGAAATAATACTCGATAAATCGTG
GCACAGTCCAACCGAATATACCGTAtgtaacaatgacccatttagaACCA
AATATCTTCTCTATAGACAAATGCATTAGAGTCCAGCATAATGCGGCTAT
GATAACTTGCTCCATTTCCCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037602XLOC_037602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059773-proteinTCONS_00059773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059773-exon-scaffold_330-1491911889:436638..437264TCONS_00059773-exon-scaffold_330-1491911889:436638..437264Clytia hemisphaericaexon
TCONS_00059773-exon-scaffold_330-1510915933:436638..437264TCONS_00059773-exon-scaffold_330-1510915933:436638..437264Clytia hemisphaericaexon
TCONS_00059773-exon-scaffold_330-1575043694:436638..437264TCONS_00059773-exon-scaffold_330-1575043694:436638..437264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:436638..437264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.084875	0	0.672699	0.376075	0	0.0904468	1.41856	2.1453	1.50197	0.974514	0.343959	1.41316	2.82238	1.58278	4.81948	3.93075	2.16632	1.95918	2.34582	1.98267	4.59547	3.60242	1.26511	2.38881	1.27577	0.406641	0.232761	0.372613	3.20296	2.49547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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