TCONS_00059701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059701
Unique NameTCONS_00059701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059701 ID=TCONS_00059701|Name=TCONS_00059701|organism=Clytia hemisphaerica|type=transcript|length=2419bp
CAAACTTTCGAAAGGCAGTAAGCAGTGCTTTTATGCTTTAATGCAAAATG
TTTAATATTGTTTTGTAGAATCTGAACACAAACGGTGACGGTTATACCAC
CGTAACAAGATGTTCAAACATAAGATGATTTTCATGGATTGAGGTAGTTT
TCCAAATAAATGGCCAAGGCATCAGCGGACAAGGATTTCGATCATTTATA
CAAACTGGTTCTAGTAGGAGATAGTGGTACAGGAAAAACTGGTCTCGTAT
CAAGATTCGCACGTGATGAGTCTAATGTTAATAAACAGTCAACGATCGGT
atagattttaagataagaagcATCAAAGCTGCTGGAAAAACTATAAAAAC
ACAGATTTGGGATACAGCGGGTGGAGAGAGATTTCGGACCATCACAAAAG
CATATTATCGTGGTGCCGTCGGtgtttttattgtttacaaTGTCTCTGTG
CAAAAGACTTTTGAGAATGTCCAACGTTGGTTAGATGACGTCCGAGAATA
CTCTGGTCCTGAGGTTGTTCTAATGCTAGTGGGCAACCAAACTGTGGTTG
AAGATTCAGCTGCTAAAGAAGGTTCTGTCAACACAAAAGAAGCTCAGGAA
TTTGCtaaacaaaatcatttgatgTTTATGGAAACTTCAACATTAGATGG
CTCGAATGTCGAATTAGCTTTCATCTCCATGGTTCAGAAGAtttatgaaa
aacaaaacaaactggaGAAAGATGATGAAGTGGAGCTCTTTCAGGCGCCA
GAGAACCTCGAAGATCAAAGAGGATATGAATTTGATACTGTGGGCGATAG
CAGACGTCGTGGGCATGAATGCGCCTTTTGTAATATGATAATCAAGCAAT
TTACTGAATTACCATGTGGGCATGGATTTTGTGGAAGCTGTTTGGAGACT
TGGGAACTAAAGGAAGATGAAGGgaaaaatcCGATCTCGTGCATCTTGTG
TAAAAAAGAATATGACGTCACAAAGACATCAAATTTTATTGATCGGCAAA
TAACAGCAGATTTGGAAGTTTATTGCAAGAAAAAAGACGAAGGATGCAAA
TGGTCTAGTTTTATCGTTGATTTCGAGGGACATTACAAGAATGAATGCCA
GTTTGCGATTATCCAGTGCGTGTTTGATGGATGCGAATTATACTTCAAAC
GAAAGGACAAGGCGATCCACAACAAGAACTGTGTTAAAAGGATTGTACAA
TGTCCTCATTGCAAACAAGATTTTCAATTCTTTAAATTGAATAATCCACA
TTTCGGAGAATGCGATCAATTTCCAGTGGATTGTTTAAATGAAGGATGCG
AGGTCAACCTTCCAAGAATCGAGatgaaaaataaacatgGTCCAGCATGC
AAGTGGGAAAGAGTCGGATGTCAGTTTGAAGACTTCGGTTGTCAAACCAA
GCTATTACGATCAGAAGAAGTCAAGCACAACAATGAGTTCAATATTCAAC
ACACCATGTTATTGATGGCCAAACAGAGAGAAACACTAAACGATCTTCAA
ACGACCAAAAACGATCTTCAAACGACCAAAAACGAACTTCAGACAACAAC
AACCGATCTCCAAACAACGAAAAACGATCTCCAAACGACGAAAAACGAGC
TGCTAGAATCGAAAAAATCATTAGAGGAACAAAAGAATCTCAATAAGGAA
ATAGTCAACAATATCAACAGATTGCATGTTGCAAATTCTTCCGTCGAAAG
CCTTTTATCACTTCTTGTAAATGGAGACATACCTCGCGCACACACAAAGC
CGATTGTATACGATGGTGTGGAATTTTGCTCTTCATTAGGAAACCACCAA
CAAATGATGAATACCATTCTTTCCAAGATGGAATTCGGTAAAACTTACAA
AACAGATCTTGGAAAAcgtttattttttacatttcgAATGATTCATGACG
TCACGTTGTATTTTCAACTATACAACAATTATGATCTTGCTTCCACCAGA
GAGTCTTACCGAAAACAAAATATGTTAGTTGATGGGAGGGACCAACTTAT
TCTTGTATACTTCGATAAAAATCGAGGTGATCAATACCAAGTTTGGATGA
ATAACCGCGACTTCACTAAAACAAATTCGTCCGTTTTTCTACACAATATG
AAAAAGAATGGTGACCGACGACAAATTAGGTATCATGTACTTGAGAACAT
CGCTTGGGATGACTATAGAAACGAAGATAAAtatgttctttttgaattga
tGAAGAAATGATTCAAACTGGATAATATTTCAAAGAGACGCGTTAGAGTG
AACTGGGGACGAGGTTGTCAAAAAATGAAATGGTCAAGTCATGCATTATG
CAACATGTttggaaaaacattttcttaatGATTAAACAATTTGAGTACTA
TCTATATACATTTACATCTGAAAAGTTAACAATTAATAATATATTCTACA
CTATTCTTCTTGCATGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_330:408915..415922+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059701 ID=TCONS_00059701|Name=TCONS_00059701|organism=Clytia hemisphaerica|type=transcript|length=7008bp|location=Sequence derived from alignment at scaffold_330:408915..415922+ (Clytia hemisphaerica)
CAAACTTTCGAAAGGCAGTAAGCAGTGCTTTTATGCTTTAATGCAAAATG
TTTAATATTGTTTTGTAGAATCTGAACACAAACGGTGACGGTTATACCAC
CGTAACAAGATGTTCAAACATAAGATGATTTTCATGGATTGAGGTTTGGC
TAGGGGTAGTTTTCGATGATTTATTCTTTTAAATTCTATTCAAATTCCTC
AATATTTGAAGGTTTGAAATAAAATGTCTGTGTGTCCAACTTTCATTTTC
GCGTTCACTTTTGTAGATCTTGCAATATGAAAAGTCTTTTTGGCAAAACA
AGCTTTCCATCAGCATCAGTATTCATTtatatattttctattttgttccA
GGTAGTTTTCCAAATAAATGGCCAAGGCATCAGCGGACAAGGATTTCGAT
CATTTATACAAACTGGTTCTAGTAGGAGATAGTGGTACAGGAAAAACTGG
TCTCGTATCAAGATTCGCACGTGATGAGTCTAATGTTAATAAACAGTCAA
CGATCGGTatagattttaagataagaagcATCAAAGCTGCTGGAAAAACT
ATAAAAACACAGGTAACTCTTTTTTTTCTACTTCTGCTTTACTTTGATAA
GTTATTCACAGTTTTGCCATTTTGGAGAATTCTCCGTTAACACACGTCAA
CAAAAACTTAAGCAATTCAAAGATCTGTGTCTCTTGATTCAGCCACTTAA
CACCGTTTGACCACAGTGTGGAAGAAAAGTTAAAGTTAAGGAAATTtggc
tttgttttttttataagcatataaaaatctgaaaacaggctcagagatgc
ttaggtcgaaagcttaataaggctgaaaaaatgctttagggatgcttata
tcctaacaTGAATTTTTCGAGGATGCTTACAAAAGATAATGAATCAGGCT
CAAAATATGCTTAAATTAGCCTATAGAACTCTTGGCTAAGTTAATGCCCA
TATAACAAACGAAAGCGGGGAAAGGGGAAAAAAAGAAACAGGTTTTTGGT
TTAGTTTTCGATTTGCTTTGCAATggcttcacaaaaaaataaagtagcTA
TACTACAAAGTAGCTTATACCTTTTTCATAGGCTCGAggtaatgcttagc
atatgcttaattttcccCACATCTGAGCTTAGATATGCTCATAAGTGCAa
tgcttgagaaaaaaaaacatgtatttcaaatttaattttttgatttgatt
ttaatcGTCTTTTTGGACCCCAAAGAGGGTTCATTTGAATGCATAGCCTT
TTAAgggggttttcaggggtcttaaataccgtcataccgacaataatttg
ggtcaaataccgtaatatcGTCGATGAAAGAAGCCTAATTATCTAAATAC
CGGTACCGGTAGAAAAttaaataccgtaatcccgtcgtttttttctggta
ataccgatttaccggggaaaaaaaggcccaataccgtcgtaccgtaaaaa
ttaccccccccccccccaaaaaagcccccccccccccccttaaactTTTA
AGACAATaaggtttttttcaaatttttcacttttactaATTCTGGTTGTA
TACTCTACAACCTTGGAAAACACTTAGTGACCCCTGGCCTGGCCTTTTTG
GAAGTCTTCAAAAAACGGTCCATAGTTGTTGGTtgcaaaattcaatttta
tggCATGTACATGTCAAGCGATACATCAGCTCTTTCGCTTTAAGCAAAGC
ACCCTACATACATATTTACACTActataaatttgaataaaacccTTTTTT
GTCTTTAATTTTCAGATTTGGGATACAGCGGGTGGAGAGAGATTTCGGAC
CATCACAAAAGCATATTATCGTGGTGCCGTCGGtgtttttattgtttaca
aTGTCTCTGTGCAAAAGACTTTTGAGAATGTCCAACGTTGGTTAGATGAC
GTCCGAGAATACTCTGGTCCTGAGGTTGTTCTAATGCTAGTGGGCAACCA
AACTGTGGTTGAAGATTCAGCTGCTAAAGAAGGTTCTGTCAACACAAAAG
AAGCTCAGGAATTTGCtaaacaaaatcatttgatgTTTATGGAAACTTCA
ACATTAGATGGCTCGAATGTCGAATTAGCTTTCATCTCCATGGTTCAGAA
GAtttatgaaaaacaaaacaaactggaGAAAGATGATGAAGTGGAGCTCT
TTCAGGCGCCAGAGAACCTCGAAGATCAAAGAGGATATGAATTTGATACT
GTGGGCGATAGCAGACGTCGTGGGCATGAATGCGCCTTTTGTAATATGAT
AATCAAGCAATTTACTGAATTACCATGTGGGCATGGATTTTGTGGAAGCT
GTTTGGAGACTTGGGAACTAAAGGAAGATGAAGGGTAATCatttattttg
gtaaaattcATGAGCTTTAACAGGGAGTttacgggaccttgaaaaccttg
aaaatcgtTAAGAACATTGAAAAGTACTTTTTCTTATTCATCCTAGGTAT
TTATAGAATATCCccatggctgaatttcttggggcaaatggggcaatgCG
TGACGAGTTGTGGCAACATTAGATATAGAAAACTCAGTGATACCCCGTGG
CtgacttaggcaaaaataggtgctgtgTATGTGCGGATGGTAAGGGTcaa
ttttttcacctttcaaagtttctctaagggttgcaaaaatctgaaaaaaa
ttagtctctctaagtgtcggaaaattcacgatttttaggaaatactTTTG
ATTAagagtgaaaaaattgtaaaaaagtctctaagGCTCTTATCtaggga
atttttcaaaaatcgaagaaaattaagggtcaccttttcagcaaaaatca
gtttctctaggggtcggtttttggaggtccaatccgcacatacccctcat
ccgccaaccctagtaccccctccggGCCTAACTCCTAACTCACCAACTAA
AACATTACCTATAATTTTTTCTGAATGGGGCAGTGGCTAGAGTTTAAGTT
TTTTTCTAGAATTAAGGGTTTTAAGTCCTGGGGTTGGTACTTGGGCAAAA
AGGAGTACGGAGATCTTTTTTATTtccatgagtcccaggtagggtcacgA
TAttaccaaaatagaaaaatctttCCCTTGTAAGAGTACCTTTTGGGTTG
GGGGATTTCGGAgaaaaattgggaaattttgagaaaattttgtaatttca
gtTCCATTCAAGataactttttttgcaaattttggcaaaattgttGGTCA
GCAAGAGTGGTAACCCCGTATATACCGTACCGTACTATCCTGGGTAccac
aaaaccttgaaaagtaccattatttttgccaaaaatttttggaaaaccaC
CTAAAAATGTTGATGAACATGCGTAGACACCCTGTATGTCACACAAATAA
TCTGTAAGTGAATAAATGACTCTCGAAATGACTTGTTAAACAGAGGAAAT
ATATGACGCTTGTCATCCAGGGTAGATTGTcaatttttataggaaaaatc
CGATCTCGTGCATCTTGTGTAAAAAAGAATATGACGTCACAAAGGTTTGT
TGTTTGAGATTTTTTATCGTGTTTCTTCCTGAAATGGcctgaaaatattt
aaatcatTTATTCCACACTCTTCAAAATAAAGGAAATTGCAAGATCATTT
ATTTTAACTTATTCTGTACATTGTGTATTTTTGTAAGTTTTCATGCATCC
GCTAGCGTAGAACAGTTCTGGACACAACGAATATGTTATTAGATGAAAAA
TATAGGGGTAACCCTTCCTTCTTCAGAAACAGACATCAAATTTTATTGAT
CGGCAAATAACAGCAGATTTGGAAGTTTATTGCAAGAAAAAAGACGAAGG
ATGCAAATGGTCTAGTTTTATCGTTGATTTCGAGGTACCACATGTCATGC
TTTTTAGAGTCGGATTTTAGTGTTTTATTTGATACTGGCCGAGTTTTAAA
ACCTGTCaaattttaaatgatcaataTCAATAAGCGTAAAAAGCACCGAT
AGCGTGAAGTATAATGTAAAAAGATTATTCAAACCTCTTTTTTCATATCT
AGGGACATTACAAGAATGAATGCCAGTTTGCGATTATCCAGTGCGTGTTT
GATGGATGCGAATTATACTTCAAACGAAAGGACAAGGCGATCCACAACAA
GAACTGTGTTAAAAGGATTGTACAATGTCCTCATTGCAAACAAGATTTTC
AATTCTTTAAATTGAATAATGTAAATATCTCATATTACTGTCCGACATAT
AAAATCTTCACGGTTCTAGCTGAATTAACCCTGGTAGTTTTTGAATTCTT
GTGGAAGGATTTTTTCTTTCTACTCAACATTTTATGTAAAATGCACTGTA
GGGTACCTTTTCATTGTTCAAGGGCTGcacgattttgaaagccattgTTT
TGGCGGCACGTgacgtcgtttagaaatcgagtgcctcCCCCCACCGGGAC
TGCCTCAAATAGATTCTCATCAAATGTTCGATTTCTTCGATTTTTCAGCC
ACATTTCGGAGAATGCGATCAATTTCCAGTGGATTGTTTAAATGAAGGAT
GCGAGGTCAACCTTCCAAGAATCGAGGTATTCCTCGTTTGATATTGCTCT
TATTTCTTTACTggttaaattttcattatttacaTGCTTACCGGTGCTCT
TACGTACGTACCCAcattaataaaacaaaaaatcacaaatattaTTATTT
CAACAATAACTTAGGGGAATATTTTCACGGAATTCAATTTCGCGGTTGAG
TGAACATTTTATTTAtaatatggcctattttgccctaaaatagTTTAAAA
ACGAAAACGACGAAAATTTGTTCCACGAATATTTCTTCACTTATGGTAAA
ACTTTGAGTTTTTGTTAGACATCTAGTCTCTATCAAACGTTCAATTTTCT
AAGGATCGCGAAACCCAGCATCCATCAACCCTACACCACCCTCCAAGCAT
TCCAGTGTTATACAACCAGGTTTTTCATCTCAAAAACAAAACTACAGAAA
ATTGTCacattttttgggattttctttCCAAGAAGTCTGCTTTATAGGCG
TATTTGCGATTTTTTCAAAGCTATCAAGTACCAATCTAACGTCCTCCTCC
ATTTTCACCTCGTTCTTGAAATAAAGTATAACCTCGCAGGTTCAAGAACA
TTCTTCCTCATTTTGGAATATTCAATTGTAACATTCTGATGCTACCCCAG
CTATTTCCTTCCTCGTCGAATTCGAGGGACTGTTCATTCAACGCCTCCCT
TTATCAGACGCCAGAGTAATCCCTTTACAGGTTAtataaactttttcatt
tatttcagatgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTC
GGATGTCAGTTTGAAGACTTCGGTTGTCAAACCAAGGTATCAAATCATTT
TTGTCATTGCAATGTACTGAATATTTCTGTTCAAAATATATCTCAAATCT
TATTTGATATAATACTTTCACAGGGAATCGAAGCTTCAATTGAGGGACAA
GAGGTTAGGGTTACTGGCGACATTTTGTGGGTAGTCACTTGATTGCGGTG
TGAGAGTGTAAGAGAAGAAGTTTTGGCAAATGAACCCATCActaattttg
gtgcaatttagcgagaattaattttggcgaacgatcaatttttgttcaat
attttagctgaaaaagagtgaaaaaagggtttttaggaaaaatagagata
ctaaaatgaaagaaaattgaatttggtGAGaatttattttcgcggatgac
ctATAATCAATTATGataatttaaatttctttcctGACGGTATTTCCTAA
GCCCTCTGATGTTCATTTCACCTGCCTTGGCTATTGTACAAAGGTATACA
CCCTCTGAGTCGAGTCTGTTCTACCTCTATGAGTGACCCAAGTATATCAG
CCACGTTTGTATATAGCACTTGATCAATACACATGGTCGAACGGTaccct
tttctttttttgccgacgaCTAGTTTGCAAGCTTTcatgttcaaattttt
ttctctcattgTTAATGTTTTCTAATCATCCCTGTTATAGCTATTACGAT
CAGAAGAAGTCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTA
TTGATGGCCAAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAA
CGATCTTCAAACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCC
AAACAACGAAAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCG
AAAAAATCATTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAA
TATCAACAGATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCAC
TTCTTGTAAATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATAC
GATGGTGTGGAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAA
TACCATTCTTTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTG
GAAAAcgtttattttttacatttcgAATGATTCATGACGTCACGTTGTAT
TTTCAACTATACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCG
AAAACAAAATATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACT
TCGATAAAAATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGAC
TTCACTAAAACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGG
TGACCGACGACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATG
ACTATAGAAACGAAGATAAAtatgttctttttgaattgatGAAGAAATGA
TTCAAACTGGATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACG
AGGTTGTCAAAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttg
gaaaaacattttcttaatGATTAAACAATTTGAGTACTATCTATATACAT
TTACATCTGAAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTT
GCATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037558XLOC_037558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059701-exon-scaffold_330-1491911889:408915..409057TCONS_00059701-exon-scaffold_330-1491911889:408915..409057Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:408915..409057TCONS_00059701-exon-scaffold_330-1510915933:408915..409057Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:408915..409057TCONS_00059701-exon-scaffold_330-1575043694:408915..409057Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:409266..409476TCONS_00059701-exon-scaffold_330-1491911889:409266..409476Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:409266..409476TCONS_00059701-exon-scaffold_330-1510915933:409266..409476Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:409266..409476TCONS_00059701-exon-scaffold_330-1575043694:409266..409476Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:410680..411248TCONS_00059701-exon-scaffold_330-1491911889:410680..411248Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:410680..411248TCONS_00059701-exon-scaffold_330-1510915933:410680..411248Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:410680..411248TCONS_00059701-exon-scaffold_330-1575043694:410680..411248Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:412357..412408TCONS_00059701-exon-scaffold_330-1491911889:412357..412408Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:412357..412408TCONS_00059701-exon-scaffold_330-1510915933:412357..412408Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:412357..412408TCONS_00059701-exon-scaffold_330-1575043694:412357..412408Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:412647..412748TCONS_00059701-exon-scaffold_330-1491911889:412647..412748Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:412647..412748TCONS_00059701-exon-scaffold_330-1510915933:412647..412748Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:412647..412748TCONS_00059701-exon-scaffold_330-1575043694:412647..412748Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:412917..413084TCONS_00059701-exon-scaffold_330-1491911889:412917..413084Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:412917..413084TCONS_00059701-exon-scaffold_330-1510915933:412917..413084Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:412917..413084TCONS_00059701-exon-scaffold_330-1575043694:412917..413084Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:413363..413440TCONS_00059701-exon-scaffold_330-1491911889:413363..413440Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:413363..413440TCONS_00059701-exon-scaffold_330-1510915933:413363..413440Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:413363..413440TCONS_00059701-exon-scaffold_330-1575043694:413363..413440Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:414173..414250TCONS_00059701-exon-scaffold_330-1491911889:414173..414250Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:414173..414250TCONS_00059701-exon-scaffold_330-1510915933:414173..414250Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:414173..414250TCONS_00059701-exon-scaffold_330-1575043694:414173..414250Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1491911889:414905..415922TCONS_00059701-exon-scaffold_330-1491911889:414905..415922Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1510915933:414905..415922TCONS_00059701-exon-scaffold_330-1510915933:414905..415922Clytia hemisphaericaexon
TCONS_00059701-exon-scaffold_330-1575043694:414905..415922TCONS_00059701-exon-scaffold_330-1575043694:414905..415922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:408915..415922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.126047	0.760634	0	0	1.3956	0	2.90354e-09	0	0	0.225465	1.09379	0	0.239234	0	0	1.185	1.96304e-08	0.0164519	2.39398	0	1.97496e-07	0	0	1.59526	0	0	0
Blast
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BLAST of TCONS_00059701 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 3.094e-57
Identity = 94/193 (48.70%), Postives = 138/193 (71.50%), Query Frame = 1 
Query:  178 DKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDFKIRSIKAAGKTIKTQIWDTAGGERFRTITKAYYRGAVGVFIVYNVSVQKTFENVQRWLDDVREYSGPEVVLMLVGNQTVVEDSAAKEGSVNTKEAQEFAKQNHLMFMETSTLDGSNVELAFISMVQKIYEKQNKLEKDDEVELFQAPEN 756
            D ++D+L+K+VL+GDSG GK+ L+SRF R+E N+  +STIG++F  RSI+  GKTIK QIWDTAG ER+R IT AYYRGAVG  +VY+++   T+ENV+RWL ++R+++   +V+MLVGN++ +    A    V T EA+ FA++N L F+ETS LD +NVE AF +++ +IY   ++ +  D  E   +P N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193
The following BLAST results are available for this feature:
BLAST of TCONS_00059701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A3.094e-5748.70Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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