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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059769 ID=TCONS_00059769|Name=TCONS_00059769|organism=Clytia hemisphaerica|type=transcript|length=2208bp
TGAAGACATTTGAGATTGGATGGTCATTTGTTTCATTCGTTGTTGATTAA
AGTAATTCCGTGTGTTATTGTGTGGCTTGAACATTATGATAAAGCATTTC
TTACCATAAAGAAAAACTACATAAACGATACAGTTGAAAACAACCAGCAA
ACAATGCAAAAATTCTCGATCAGTTTTTTCACGAAAAATTCCAATTGGAA
AACTGACTGCAAGGGTCATCGTAGTCAACATGGTAGCATAAACAAGAGAC
ATTGCATCATTCATAGGTCCTGGTAAATGACGTCCACGAAAAGCTTGAAC
CAAACAAATCAATTGGAAAATAATTAGAAATCCAATAATGAGATTCATAT
ACATGTAAGTGTTGCTGAAGTTGTGTCGTATCATGTTGATTTTGTCCAAT
TCGAACGATATGTGGGGTTCCTCCATATCAATGAGAACATATAAACCACC
ATTACTgaataatataaatattatgATTGTGAAGACTTGTACTGCAACCG
TCTTTTTGGCTTCACCTCCTGTCAACTTCACGGTAGAACTGAAAGCGTCG
ATcagtttttgtgattttgtatACACAAACCCCATGTTCAGGGTATAAAA
GAATGTTAAATTGACACATTTTGCTAAAGAGATGGAAACGAGGAGCTCAT
CTTGAATGTAGAGAAGATTGTTCACCAACATGGTAATGACGATAGTCACC
AAGTGGGAATATGAGAAATGAACATCCGATACTTTGACAGTGGGGGTGTC
AcgatattttacaaaaattactAAAGTGGAGAATGTTACAAAGACACCAA
ACGCTGTTAACAGGATAATGATCATTTTTTCTGCTGCGTTTAATTTGGAG
TATCGATTTGTGTACGGATCGATACATTCTGTTCTCAAGCCATTATCGAT
GCTCTTGATCCCATGACATGGTCTGCAACGCCCATCACCATAGCCAACTT
TGATATGGTCTTCTGGACATAGTTGACACTTCCAACCATGTTTTGTGTCA
TAAATTTTCTCTCGTTGGAAAATTTCACCATAGCTTTTGTAATAACCTGG
TGTACAATTCAGTTTTGGACATCCTAATGATGCATGATTAAAGTCTCCTA
AAAGCTTTTCAGATGTTGTATAAGCTGAGGTTATTGACCATTTTGAATCA
ATATTAACATCGTCTAATAACTCATTTAAAGGAATAGTGTAGTCAGGGTT
TCGCATAAATCTATTTAACCAAAACCCAAACAGTTGCTCTAATTTGGATA
AATTTTGAAGTGACATCTCGCCTTTAAAGAGTTCAAATATATCATCCAGA
AATTGGATTAATATTTCACTATACCCAATTGAAAGTAAAACATCCAAGGA
AACTTTTGCAACTTGTGTTGAATACATAAAAGTGAATTCTTTACGCTGTA
AATTCTCCATACTAAACCAATAGCCTGGATTCTGAAGATTGTATGTTCTT
GAGCTACGACGAAGATCATGGGCTAAGATGAAAGTGTTATTGTATTTGCC
ACCGAAATTGTCCAAGAAATGAATAACATCTTGTTGGTGTGTTTGATATG
AGCCAAACAGGATTAAAGCTGATTCTCTTCGCCGCCAAGAATCCAAATGA
GGAAAAATATCTTCTGCAAAAGACACATTATTGACATCAACGGATTTTCT
TTGCAGACAATACTCCTTGGTAGCAGCAAATAAATTATAACTGTTGATAA
AATATTCTTCAGATGGTGTCGGGTGATCTTCATAAAAAGAGAGCATTGTT
AGATTCTTCCAATTTAGTTTTCGAGTGACATGAAGTAAGTATTTAGAGTA
ATCATCAACTGTTTCAAACCTGTATTTATCATCACAGCTGGTTGGTAGAC
ACATCTTTGGATACCACGTTAAACTTAACAATCTACTGACTAAGTTCACC
ATAAAGTCATTTTGCATGTACGAAAACAAAGTTACAATGTCTGGTTGTGA
ACAGTTTCTTCCTTCCTCACATGGCACATGATATCTCTCACTTAAGAGAA
TTTCGATTAAAGTTTCAACTAAATGATCCGTGTTGTTGCACTCGATATAG
TAAGAATGATATTCGAAATCAGAATGCTTGAATATTTTAGTTTTCTTCAC
CACGGCCTCGATGGTTTGTTTAATCATGGTATCTGTCGCCAAAGGTAGAT
TGTCAATATCTGTAGATGTGGAACAATTGGAATATATACCAATTGAACGA
AAAGATAA Run BLAST on NCBI protein sequence of TCONS_00059769-protein >TCONS_00059769-protein ID=TCONS_00059769-protein|Name=TCONS_00059769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp
LSFRSIGIYSNCSTSTDIDNLPLATDTMIKQTIEAVVKKTKIFKHSDFEY
HSYYIECNNTDHLVETLIEILLSERYHVPCEEGRNCSQPDIVTLFSYMQN
DFMVNLVSRLLSLTWYPKMCLPTSCDDKYRFETVDDYSKYLLHVTRKLNW
KNLTMLSFYEDHPTPSEEYFINSYNLFAATKEYCLQRKSVDVNNVSFAED
IFPHLDSWRRRESALILFGSYQTHQQDVIHFLDNFGGKYNNTFILAHDLR
RSSRTYNLQNPGYWFSMENLQRKEFTFMYSTQVAKVSLDVLLSIGYSEIL
IQFLDDIFELFKGEMSLQNLSKLEQLFGFWLNRFMRNPDYTIPLNELLDD
VNIDSKWSITSAYTTSEKLLGDFNHASLGCPKLNCTPGYYKSYGEIFQRE
KIYDTKHGWKCQLCPEDHIKVGYGDGRCRPCHGIKSIDNGLRTECIDPYT
NRYSKLNAAEKMIIILLTAFGVFVTFSTLVIFVKYRDTPTVKVSDVHFSY
SHLVTIVITMLVNNLLYIQDELLVSISLAKCVNLTFFYTLNMGFVYTKSQ
KLIDAFSSTVKLTGGEAKKTVAVQVFTIIIFILFSNGGLYVLIDMEEPHI
SFELDKINMIRHNFSNTYMYMNLIIGFLIIFQLICLVQAFRGRHLPGPMN
DAMSLVYATMLTTMTLAVSFPIGIFREKTDREFLHCLLVVFNCIVYVVFL
YGKKCFIIMFKPHNNTRNYFNQQRMKQMTIQSQMSS Run BLAST on NCBI transcript from alignment at scaffold_330:285454..287661 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059769 ID=TCONS_00059769|Name=TCONS_00059769|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at scaffold_330:285454..287661 (Clytia hemisphaerica)
TTATCTTTTCGTTCAATTGGTATATATTCCAATTGTTCCACATCTACAGA
TATTGACAATCTACCTTTGGCGACAGATACCATGATTAAACAAACCATCG
AGGCCGTGGTGAAGAAAACTAAAATATTCAAGCATTCTGATTTCGAATAT
CATTCTTACTATATCGAGTGCAACAACACGGATCATTTAGTTGAAACTTT
AATCGAAATTCTCTTAAGTGAGAGATATCATGTGCCATGTGAGGAAGGAA
GAAACTGTTCACAACCAGACATTGTAACTTTGTTTTCGTACATGCAAAAT
GACTTTATGGTGAACTTAGTCAGTAGATTGTTAAGTTTAACGTGGTATCC
AAAGATGTGTCTACCAACCAGCTGTGATGATAAATACAGGTTTGAAACAG
TTGATGATTACTCTAAATACTTACTTCATGTCACTCGAAAACTAAATTGG
AAGAATCTAACAATGCTCTCTTTTTATGAAGATCACCCGACACCATCTGA
AGAATATTTTATCAACAGTTATAATTTATTTGCTGCTACCAAGGAGTATT
GTCTGCAAAGAAAATCCGTTGATGTCAATAATGTGTCTTTTGCAGAAGAT
ATTTTTCCTCATTTGGATTCTTGGCGGCGAAGAGAATCAGCTTTAATCCT
GTTTGGCTCATATCAAACACACCAACAAGATGTTATTCATTTCTTGGACA
ATTTCGGTGGCAAATACAATAACACTTTCATCTTAGCCCATGATCTTCGT
CGTAGCTCAAGAACATACAATCTTCAGAATCCAGGCTATTGGTTTAGTAT
GGAGAATTTACAGCGTAAAGAATTCACTTTTATGTATTCAACACAAGTTG
CAAAAGTTTCCTTGGATGTTTTACTTTCAATTGGGTATAGTGAAATATTA
ATCCAATTTCTGGATGATATATTTGAACTCTTTAAAGGCGAGATGTCACT
TCAAAATTTATCCAAATTAGAGCAACTGTTTGGGTTTTGGTTAAATAGAT
TTATGCGAAACCCTGACTACACTATTCCTTTAAATGAGTTATTAGACGAT
GTTAATATTGATTCAAAATGGTCAATAACCTCAGCTTATACAACATCTGA
AAAGCTTTTAGGAGACTTTAATCATGCATCATTAGGATGTCCAAAACTGA
ATTGTACACCAGGTTATTACAAAAGCTATGGTGAAATTTTCCAACGAGAG
AAAATTTATGACACAAAACATGGTTGGAAGTGTCAACTATGTCCAGAAGA
CCATATCAAAGTTGGCTATGGTGATGGGCGTTGCAGACCATGTCATGGGA
TCAAGAGCATCGATAATGGCTTGAGAACAGAATGTATCGATCCGTACACA
AATCGATACTCCAAATTAAACGCAGCAGAAAAAATGATCATTATCCTGTT
AACAGCGTTTGGTGTCTTTGTAACATTCTCCACTTTagtaatttttgtaa
aatatcgTGACACCCCCACTGTCAAAGTATCGGATGTTCATTTCTCATAT
TCCCACTTGGTGACTATCGTCATTACCATGTTGGTGAACAATCTTCTCTA
CATTCAAGATGAGCTCCTCGTTTCCATCTCTTTAGCAAAATGTGTCAATT
TAACATTCTTTTATACCCTGAACATGGGGTTTGTGTatacaaaatcacaa
aaactgATCGACGCTTTCAGTTCTACCGTGAAGTTGACAGGAGGTGAAGC
CAAAAAGACGGTTGCAGTACAAGTCTTCACAATcataatatttatattat
tcAGTAATGGTGGTTTATATGTTCTCATTGATATGGAGGAACCCCACATA
TCGTTCGAATTGGACAAAATCAACATGATACGACACAACTTCAGCAACAC
TTACATGTATATGAATCTCATTATTGGATTTCTAATTATTTTCCAATTGA
TTTGTTTGGTTCAAGCTTTTCGTGGACGTCATTTACCAGGACCTATGAAT
GATGCAATGTCTCTTGTTTATGCTACCATGTTGACTACGATGACCCTTGC
AGTCAGTTTTCCAATTGGAATTTTTCGTGAAAAAACTGATCGAGAATTTT
TGCATTGTTTGCTGGTTGTTTTCAACTGTATCGTTTATGTAGTTTTTCTT
TATGGTAAGAAATGCTTTATCATAATGTTCAAGCCACACAATAACACACG
GAATTACTTTAATCAACAACGAATGAAACAAATGACCATCCAATCTCAAA
TGTCTTCA Coding sequence (CDS) from alignment at scaffold_330:285454..287661 >TCONS_00059769 ID=TCONS_00059769|Name=TCONS_00059769|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_330:285454..287661 (Clytia hemisphaerica)
TTATCTTTTCGTTCAATTGGTATATATTCCAATTGTTCCACATCTACAGA
TATTGACAATCTACCTTTGGCGACAGATACCATGATTAAACAAACCATCG
AGGCCGTGGTGAAGAAAACTAAAATATTCAAGCATTCTGATTTCGAATAT
CATTCTTACTATATCGAGTGCAACAACACGGATCATTTAGTTGAAACTTT
AATCGAAATTCTCTTAAGTGAGAGATATCATGTGCCATGTGAGGAAGGAA
GAAACTGTTCACAACCAGACATTGTAACTTTGTTTTCGTACATGCAAAAT
GACTTTATGGTGAACTTAGTCAGTAGATTGTTAAGTTTAACGTGGTATCC
AAAGATGTGTCTACCAACCAGCTGTGATGATAAATACAGGTTTGAAACAG
TTGATGATTACTCTAAATACTTACTTCATGTCACTCGAAAACTAAATTGG
AAGAATCTAACAATGCTCTCTTTTTATGAAGATCACCCGACACCATCTGA
AGAATATTTTATCAACAGTTATAATTTATTTGCTGCTACCAAGGAGTATT
GTCTGCAAAGAAAATCCGTTGATGTCAATAATGTGTCTTTTGCAGAAGAT
ATTTTTCCTCATTTGGATTCTTGGCGGCGAAGAGAATCAGCTTTAATCCT
GTTTGGCTCATATCAAACACACCAACAAGATGTTATTCATTTCTTGGACA
ATTTCGGTGGCAAATACAATAACACTTTCATCTTAGCCCATGATCTTCGT
CGTAGCTCAAGAACATACAATCTTCAGAATCCAGGCTATTGGTTTAGTAT
GGAGAATTTACAGCGTAAAGAATTCACTTTTATGTATTCAACACAAGTTG
CAAAAGTTTCCTTGGATGTTTTACTTTCAATTGGGTATAGTGAAATATTA
ATCCAATTTCTGGATGATATATTTGAACTCTTTAAAGGCGAGATGTCACT
TCAAAATTTATCCAAATTAGAGCAACTGTTTGGGTTTTGGTTAAATAGAT
TTATGCGAAACCCTGACTACACTATTCCTTTAAATGAGTTATTAGACGAT
GTTAATATTGATTCAAAATGGTCAATAACCTCAGCTTATACAACATCTGA
AAAGCTTTTAGGAGACTTTAATCATGCATCATTAGGATGTCCAAAACTGA
ATTGTACACCAGGTTATTACAAAAGCTATGGTGAAATTTTCCAACGAGAG
AAAATTTATGACACAAAACATGGTTGGAAGTGTCAACTATGTCCAGAAGA
CCATATCAAAGTTGGCTATGGTGATGGGCGTTGCAGACCATGTCATGGGA
TCAAGAGCATCGATAATGGCTTGAGAACAGAATGTATCGATCCGTACACA
AATCGATACTCCAAATTAAACGCAGCAGAAAAAATGATCATTATCCTGTT
AACAGCGTTTGGTGTCTTTGTAACATTCTCCACTTTagtaatttttgtaa
aatatcgTGACACCCCCACTGTCAAAGTATCGGATGTTCATTTCTCATAT
TCCCACTTGGTGACTATCGTCATTACCATGTTGGTGAACAATCTTCTCTA
CATTCAAGATGAGCTCCTCGTTTCCATCTCTTTAGCAAAATGTGTCAATT
TAACATTCTTTTATACCCTGAACATGGGGTTTGTGTatacaaaatcacaa
aaactgATCGACGCTTTCAGTTCTACCGTGAAGTTGACAGGAGGTGAAGC
CAAAAAGACGGTTGCAGTACAAGTCTTCACAATcataatatttatattat
tcAGTAATGGTGGTTTATATGTTCTCATTGATATGGAGGAACCCCACATA
TCGTTCGAATTGGACAAAATCAACATGATACGACACAACTTCAGCAACAC
TTACATGTATATGAATCTCATTATTGGATTTCTAATTATTTTCCAATTGA
TTTGTTTGGTTCAAGCTTTTCGTGGACGTCATTTACCAGGACCTATGAAT
GATGCAATGTCTCTTGTTTATGCTACCATGTTGACTACGATGACCCTTGC
AGTCAGTTTTCCAATTGGAATTTTTCGTGAAAAAACTGATCGAGAATTTT
TGCATTGTTTGCTGGTTGTTTTCAACTGTATCGTTTATGTAGTTTTTCTT
TATGGTAAGAAATGCTTTATCATAATGTTCAAGCCACACAATAACACACG
GAATTACTTTAATCAACAACGAATGAAACAAATGACCATCCAATCTCAAA
TGTCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059769-exon-scaffold_330-1491911889:285454..287661 | TCONS_00059769-exon-scaffold_330-1491911889:285454..287661 | Clytia hemisphaerica | exon |
| TCONS_00059769-exon-scaffold_330-1510915933:285454..287661 | TCONS_00059769-exon-scaffold_330-1510915933:285454..287661 | Clytia hemisphaerica | exon |
| TCONS_00059769-exon-scaffold_330-1575043694:285454..287661 | TCONS_00059769-exon-scaffold_330-1575043694:285454..287661 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:285454..287661 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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