TCONS_00005922 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005922
Unique Name	TCONS_00005922
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1865

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000061:474224..487068-
coding sequence from alignment at sc0000061:474224..487068-

transcript sequence

>TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=transcript|length=1865bp
GTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAAAC
ATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTGGT
TTCAGCATTGATGCAATTCTTGGCAAAacagaaactaaaatttacgaaaa
agaaaattcaaATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACT
TAGAAAAGCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGAT
GACGTCTTCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAA
ATTACGACGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAG
AAAGAGCTTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGAT
TTAGCATTGAGATTGGACCTAAGCGAAGCAAGAGTTCAGGTTTGGTTTCA
AAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATCACCGGAAGGCA
ATTTTCATCATTCACCACACGATCTAATGCCACGCCCGTTAAATGAATTT
CCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCTGCCACTTCACC
AATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAGACATCATCCAT
ACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGCCTTGTGATAAA
CGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCCATCGGTTATTG
CTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGATAGTTCAACGT
ATTataaaaacttggaaaaagaatttttagaaatgaaaaaatccagTATT
AACGAACTTAGATTCCGCGCACATGAACACCACGGACCATTTATCGATCT
TGCTCACCCAATCAGAAGATAGTAAATAAACCACTCGTCCAATCAAATGG
ctagtattttttttaatgatcCAATCGAAACAGACCCATGGTACATCACC
GTCCAATCAATACAacagattcgaatgttttgtttttgaacaacaaaatc
tttcatgaaaaagaaaaacgaaaacaaatttttacatcATCAAAACATTG
AACAAACACGACTTGCGATGTCTGAGCTTTGGGAATTcctttttaatttg
aatttttgtttttcctaatttttttgtGTGTAAAATGTTTTTAAGTGTTA
TCCATCTTGTAATTTATCAAAACtctattatttttcaaagagttTATTAT
GGTCGATCGGTTATATTGGACCCAAAGGAAACTCTGCCCATCGACGGGGA
TGCGCCACTTAGGCTAAAAATGTTGACCTATTTCTTTGTCAAAATTAGCC
GAGACGAGTGACTCTGAGTGGGACTGAAATCCCAAAATTTTCTCctaatt
ttcctaatttttatcaaataaggCACTGTACGAAGGGACTAATAtctcaa
ctttttgaaaaaaggctCCCATGTCTCTTATTGACCAAAAAAAAGCGATT
ATATGTTAAACTATTGGTGAATCCTTGAGCTAAGATTTAGTACAAGGTTA
TCCTAGCCTcttccccgtgtattccaggctttatttacgttataGATGGT
CCCTTATGGAGCATCATTTTTATAACCATAAATAAGTCGAATAATACACA
GGGAATCCTTTACAACTATTAACCATTCTGCATTCTGCATTCTgttttgt
ttgttcttataatgttcttCAATTAGTGTTCTTGTTATAATTGTGTTCTT
AGTCAATTTCAGTAAAGAAGATTGAATTTGTAAATAAGAAAAAGATCCAA
TACAGGGAACAAAATGTAAatagaattttcactaatataaGAAATGGTAC
GATGAAATTACAAAG

Run BLAST on NCBI

protein sequence of Rx

>TCONS_00005922-protein ID=TCONS_00005922-protein|Name=Rx|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
LVTKKKYEERYRNKEKHTQRDIMVHHSTERHRGFSIDAILGKTETKIYEK
ENSNGSEVDSLDDKEDLEKHSDISKKGDLSDDDDVFSSSDEKNDGDKPRK
LRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQ
NRRAKWRKREKQSPEGNFHHSPHDLMPRPLNEFPPPPHFHHGLHPSATSP
ILHSPPSIMIPSRHHPYRNSVSPPVHPCSPCDKRPPSFGAPPLSPPIGYC
YPPNGGPPRPRLDSSTYYKNLEKEFLEMKKSSINELRFRAHEHHGPFIDL
AHPIRR

Run BLAST on NCBI

transcript from alignment at sc0000061:474224..487068-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=transcript|length=12845bp|location=Sequence derived from alignment at sc0000061:474224..487068- (Clytia hemisphaerica)
GTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAAAC
ATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTGGT
TTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAATTTACGAAAA
AGAAAATTCAAGTAAGTGCGGGAATTCATATTTTTCACATCTGTTTCGCA
TCATTTATACAGATACAGTATACCCGTTAGCAGGCTGCATTACAAATTTC
TAAACATTAGAAATGCAACGGAAATGAGACTCTTGTTGGAAGAACCAAAT
GTATCAATTTTTTGGAAGGCTTCACCTTCACTAGAAGCTCATGGATGTCA
GAGAGTGATATAAAGGACTGTGACATTATAGCGTCTAAAGGCACAGGGTC
CACGCCACCGGGGTCACTTTTTTGCTAAGTAAAAATTTTTGGCTGCGTCT
CCTTTCATTGGCCTTTCACTTACAATTTCATGGCGCTCTGAAGGTATTAC
CCTCCGTTGCATAATTTCAACTTCCTTTATATCCCGCTCTGCGCTATAAC
TGGGTAGAAAAAAGAAACTTAGAAAATTATGGGATAATGATACATAATGA
ACTTATACTTTCAAAGGAAGAATATTGAAGGTTGGTTTAAATCAAGTGTC
TCGTGAGATTTGAACTAAAAAACTGATTCACATCCAATTAAATCTTTTAT
AAGAATTAGAAAACTAAACGAGAAAAAACAAATTTTGTAACGTAAAAACT
TAAAAAATCTTTGAATTATTGAGAAAGCCTAGATAGATAGTCTTAAAATC
CAGCAGACTCAACAACAAAGTGGTTGAGAAACTCTTAAGTTATACTTTTT
CAGCAAAATACTATTTCAAAGCAATATACAAAATTTGTAAATTTTCTTAC
AAAAAAAACGAAGCACATGCAGCAGTATCAGAGATTAATTATGGTTAAAA
AAACTATCCAATTAGAGGATTGATATTTAATTGATTGTGATACGCATCTG
TTAATTAGATGACCCATTAAATACCAATTAATTTGACATTATAACCACAG
AATCCTATTAACTATGCTAAATTTATAAACTTTTTGCTTACCTTTTTTGC
ATGAAATATGATTTTAATTATCCCCCTTGTACTGATGAATGGCGTTAGCA
CACGCTGTAAATTGATTTTATTGCTTTTTGGCTTGAAAATTAATATTTTT
GCGGATTTGATATACTGTACTGCTGATAGATTTATGGTTATTAAAGGTAA
TTATTGGCTCTATTTAGGCCTGAAAATTTGGTTCCGAAATATATTGCCTA
GGTATAAATCGTTTTCAGGGAAGCTTATTTTTTATCAAAATTCTCCCCAA
AACTGTTTGGTTGATTCAATAAACTGTAAACCATTAAAGTCATCTATAGT
CATTCTCATTTAAGTTTAATTTGTTCCTAAAAAACATTGATCTTGTGTTC
GCCAAAACTAATAATTAATTACCCATCCTTCTATTGTTTTTTAATTCGCG
TTTCATTGAATTTCAAAATGAACCAATCAAATCGTTTTACGTGATAGCAA
GTGGATGCGCAATAGAAAATCAATAATATATCCTTTTTTATAATTGGTTC
ATTTCCTTTGTTGCACACAGCCATTAATTAAACTGTTAAATATTATTAAT
TAAAACTGCTGCAAATAATGATACCCACCACACGAGATAATAGGTTATTG
TTTCAAGATTGGTTTATAAGACCAGACTTCGGGTAATAGAAGACTTTAAA
ACTTTAAAACTAAGCTTTTGGAGGATTTGTGATTAATTGATAAATATTCA
GTTATTCATGTTGAGCTATGATAAAAATGGTCCTACCTAGGAGTAAAATT
TATGATAACTAGGTAAAATTTTCTGCGATTTTTCATATGGTATTAATCAT
GCTATATTAATAAGTTTAATGTAAAAGTGAAAATTAATTCAAAAGAATTA
GAGGATTCATAATCAATTAGCGGTGTTATTTGAAGTGCAATTGATGTGAG
ATTTCCGCGTGCACATACCAATATTTGGGACTAATTTCAAATTACAAAAT
TTCATTTTTGTATGATTTATATATTGATTTGCTGATGCCAATAATTTGAT
TCACACAACTATTAAAAAAACAATTTAATTTAAGTAATTTTTTTCGCTAA
GTTTTTCCCACCGCAAAAGGCAATTTTAATGAATTAGTTGTTTTTCATGC
ATATTGATTTTATTCAAAATACAAATTAGTATGTAATTGCTTAGGTTTGT
ATAATCATTGACAATCAAATTTTATTTTAGTTGGTATTGGCCTTACATAA
AAATACTAAAACTTCGAGCAAAGTAGTCCCAATTAGGCAACTTACAAAAC
ATACGTCAAAATTCAAAATAACAGGACATTAAATTTTCCCTGTTTAGGAT
TTAAGGAAATTTGGAGTGCTAAGAATTTATTATCCCATCTTTAACCCATT
TCAAATTTATGAAAAAAATACTCTGAGAAAATACTCTGAGAAAAAAAACA
TGATTTAGTTTGATTTATACAGAAAAAAGGATTGCAAAGTCTCCAAATTT
AAAAAAATGAAAACACCAAAAAATGAAAACACCCAAAATGAAAACTTCAA
ATAATTTGAATGCACAGGGTGTGGTAAAAAAATTTCATTTTTCATTTTCG
TTTTCAGATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACTTAGA
AAAGCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGATGACG
TCTTCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAAATTA
CGACGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAGAAAG
AGCTTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGATTTAG
CATTGAGATTGGACCTAAGCGAAGCAAGAGTTCAGGTAAGATTCAAATGA
ATTTTCTTTTCGTATAAACAGTGCCTTAATTAATATTTTTACCTTGCATA
CAGATTAAGAAATATACAGACTAAGGAATTTAAGATCCTCCTCGCGTTTA
GTTAAGGTGGTAGTCTACCGAGAAATGGAAAATCATCGAAAAAATTGTCG
AATTTTGGTTTTTGGGTGTTTTGAGATCCTTAGGTCTTTCTGAACATCTC
CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTATTCAGAAAACCTGACACAAGCAAAAT
AAAGTATTTTACCCCCTGACTGATTTTACCCCCGTCTTTGGTTATTTTTA
GAATTTTTTTTTATTTTTAGAAATGTTATGAGTTGATATACATTTCCTGA
AAATTTCATTACGAAATGTAAAGAAGTTCTTGAGTTATTGCAAAAAATGT
GATTTTTTGACTTTTGAAATCTGGCGGTAGACTACCACCTTAAGATAATT
GCTTATTTATAACTATAGTTTAAATGATAATTATGAGTATCTTCTCGATT
TTGGAATATCATTTCAAGATAAAAGGCATACGAGACTTTAGCGTTGAGAA
CCCATGCCTTATAAGTTAAGGGAGAGTTAGGACCCCAGGTATAGTAAAAT
AGGGAATCGTTATACCACAAATACTATTTTGAGAATATTTGAAGCTATAT
GGGTAATTTGGGTTAGAAACAAACAAACAAAATATAATTAGATGGTTTGT
TAATGGATCTCACGATAAAAGAAAACCTAGTGAGATCAACTTTATAACAC
GACAGGTATCAAGAGTTTAGCCCCGCCATGCCATACCTCTTGTATTATAA
TCGTTAATTACCCTATCAATAGCAGATTAATTAAAGTCTTAAACCCAGAT
TAATTAGAGGGGAGTTAATTACTAACAGATATACTAATGAATTTTCTCCT
TCTTATTTCGTCTTTTATTAATTTGTTCACTAGACGATCGTTGTTATTGA
GCTCGTTAAGTAGGTTTTTATTGATCTTAATTGAATTTTTATTGACGGCC
TTAATTACTTTTTTTATTGAGAAAGGGAAGTACAGTGGAGTTAATCATAT
TAACCTTTTTTTGTTTTAATTTCAATAAAGTTAAATCAATAAACTTCAAT
TAATTAAGGTGTTAATCCATATTTTTAATTTAAATTTCCTTTTTGCTTCA
AATACTTTGAGAAGGTTTAAGTGAAACATTAATCAAAAAAAAAAGCATTG
TGGACAAAATTTGACTGAATTTTAAATTAGACATACTGTTTGATATTTAA
GGATCTCCAAAAAATTAACCTTTCCAGCGCGCAACTTTTTAAATTTTCAC
GCTGTCAGCGCGCAACATTTTTTCAGAAAATAGACATGTTCAGTTATTTG
ATCATAACTCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCAAAACATTACATCACCATATATCAAAAGAAAGCTTAGAACCTCTAC
TTTCCGTTTCTCTTTACTTCTACGGCTAGCAAAGAAGCCAATGGGAGAAA
TATAACTTAGAAGATCACTATGTCAAAAAGACGACTATACTCGTCCGCCG
GAACGTATGCTCGACGACTATACTCGTCCGCCGGGCTGAAAAGGTTAAGC
AAATTAAAGCAATCTTGAAAATCATATACATAAATCATGTATTCTTATAA
AAACGATATCATTATATATTAGATTTCCTATTAGACGGTATTAGGGGCTC
ATTAATTATCTATACCTGTTGATTTTAAAGAGATTTTTCTTTAATTAATT
TCAATTGGTTATGAGGTCAAGAAAATCTTAATTAGAATCAATTGAAATTC
CAATAGAATTAAATGATCTTAACGAGGTCTTAAATCGCTTAAGTTTTATT
TGTTTGTTTATATATTGGTCTTTAAAGCTTCTTTTAGTAGTGGCCCTTTT
TAAGTGGCTTAAAATTACTCGATTAATTAGAGCCATTGAGCCATTGCCTA
TTCTCGATTTCGGTATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGC
TGGGCATGTTCTTACAATGTTTATAACTTTTCGACGAATTGCAGCCTAAA
TCTTATGAACTGGGTTCTAATAAAAAATCAACGTATATTTTAGGATAAAA
TAATCGAAAAGGTCAATGAGGCGAGATAGTAATATATTTATAATAAGTTC
GGCCTTTAAATCGTCACAAATATGATATATGGTTTGTGCATTTCGATTGA
AATTGCATAACTTTGTCATTGAATTGTTTCAATTTCTCAATTTAAGCCTC
TAAACTGAGTCGTTTCCAGAATCTTACGTCAATCGAACGTTGAAAAACTG
TAACATTCTGAACTTGGATTTAAATCCTTTTAAATAGAAAATCTCAGTGT
GGCACCCTGCCAAATTGAATATGATAAAGTTCTTTTTTGAAAACAAAACA
GTCAAGTCAGGGTGTTCAACTCTTTGAAGATTAAATTCCTGTAGTGCCCC
CTTTTAACCTTTTACACAAAATGTGTGGACTTTATTGAAGCAAAAATGTC
GTTGAAAAATTAAATTAAATTCTATTCGGCCATATAATAGGCGGAAAAAG
TGGTAAATTCTTTTGTTAATTCTCAACAGTGCACAGTTAAGATTTTAATA
TTAACTTTTTTTATGAGAGTAAAGTTGGTTTAAAAAANGCAGTTAAGATT
TTTAATATTAACTTTTTTTATGAGAGTTGGTTTAAAAAAGAAAACCTAGG
GATGATTTAAATGATTGACACAAATTTCGATACCTTTGAAAATGTATACT
GGGTGTACTAAATGTTAATATAATCTGGTTATTAATATAGAAGCAACAGA
ACTGTGAAACAAAACTGTGTGTATGTCGCCTGACATGTCCAGCTAATGGC
ATACGTTTTTCAATGTAAATGCTGTGTACACTAATAGACCTATTATGTCT
GCCCAAGCTTGACGCTTTTTCATGTCTTTTTATTTAGCTGTTGATATATC
TAGCGTTTCTTTTGCACGCGAGTCGATGCCGCTAGATATGTTCAGAAAAC
TAGGTTGCATTTACTTAGGCATTAAAACAACCCTATCTCGTAAATGGCAA
ATTAAAGCATTTTTGACCGGGGACAGCCAAGTAAATTTTACATTTATTTT
CAAACCATTTTTGAGATCTAGCACACCCCTGTGTCACAGACCCGCTGGGG
CCCAAGCCCCACTGGAAAATTTGGTAAAAATTTCGTCCCCGGTGGGAAAA
GTACCTTAGAATTTCAGCCCCACTGAGAAATTGACTTTGATTTCATCCCC
ATTCGAAATTCATTGCTTAGAAATTCCCCTCCAAAACCATCCCCACTGGA
TTTGTCAACCTTGGAACAAAGGAATTTCTATCCCCAATGAGATTTCAATC
GAAATTTTTATCCCAGCTGTAGGAAAAAGTTTCACCGGGGCTGTGAGACA
GGGGTGTTCTAGAATAGATTATGGTGCCATATGCATTGAATTCTGTTTAA
AGGCAGTTAGAAAAGATAATTCGATCCCACCTACTACAGAATACTATATG
AAAAATCAAAAATCTCTGGTTAAGCAATTATTATGTCAAGCAGGGGACTT
ACAAATGCTAAGTCTTATTAATTTTCATTGCACTTATTGACTTAATAAGT
ATTATACGATTAGGATCATGGACTGATGTTTTAGCAGAATTAAAATGATC
GACGAGAAATGAGATTAAGACAAACTGTCAAATTTTCTTATCGTGGGTTT
GAATTCTCTTATTACATTGTTATTTCTAAAGAATCAATAAATTTTTGTCG
AGGCTTAATTGTTCTTATTGCTTGGAATTTTTAGCCTTAAATTGTTCTTA
TTCTGTTCTTGTTTAGGCGTTTTAGGCTTTTCACTCTTATTTTTAATGCT
AAAATACTTGAAATTCAGCATTGTCAGGCTTTGAGCTTCATTCATTCGTT
CTTATAAAATTGTTCTTAAGAAAATAGGATTAACACAAACTGTCAATTTT
TTTATGATTTCTAATTATATAAAAACTTCAACTTTTGAAAAATTGGCATA
TTCTCCTGCTTAATCTCTATTAATTGAATCTAGATAATTGTTTTTTTAAC
TTATCATTATTGCTTTGAAATGACCTAATATTGGTTTCGCGATTGGTTAT
GAAATGATTAATTGATTAGGATTAGATGAGTATAAACCACTTAGTAAAAT
TCCTTTGAATTTCATTAAAAAAACTATAAAGGTATTCCAAGTACATGTTT
TTTTATATAAGAACAAACTATATAAGAACATAAGGCTTCGATTGCCAAAA
AGGTAAGAACAAGTAAAGAACATTTTAAGGGTTTGCAGACTCTTAAATGG
CCAATTTTTAAAGAAAATGGACAAAAATGCTCACAAAATGGTGAAAATAA
GAACATCCTAAGAATTCAAATTTTTCAGATGTTCTTATACAAAAAACGTG
TAAAAGTTATCTTGCCTGAATTTTTCATAATTCAGCTAAAAAGAAGTTAT
TTGATAATAAAAATCAATGGAAAACACATTTTTAGGGAAACAAGATTTTC
ATTCACGCAAAATTTATGTTATTAAGCAGATTTAAGGATTAATCGTAGCA
AAATAATCTCTAAAATTAGGATTCTGATTTTATTAATCATCTTAGCAAAT
CAAAGAATATTTGTTCTTATGAGCTGATTAAGAGTTTTATCCTTAGAATC
TTTAACCCCGATTAGCACACGTGTTAAATTCCCACACATTGCGAAAAAAA
TTATGTTTTTGAATATTTTTTCTGATATAATAATCCTAATCTCAAATCAA
AACTTCAAATTATTTTTATTATTTTATAATTTGAAAAAATATTATTTCAT
GAAATCTGTCGTAATCTGACAATATGCAATTTTACAATAAATTTTATTGA
TTTTGTCTTTTAAGTAGATTTATTATATAGATTTTTGAGGTTTGGTTTTA
CGAATGAAATGAGTTTTTTGAATTTATTTAAAAATAGCACCTAATTGCCA
CAAAGTGACGGATTCAAAAAATGGATTATTTAAATCAGAACAGTGTTCTT
AACCCCTATAAACCAATAAAGCAATCAAATCTATACAACTTCATTAAATC
CATAATTATAATTATAACAGTCAGGAAGTATTAAAAGATTGATAAGACTT
TAATCTAAAATTTGATCTGATATATGCCAAAAAGGATTATTAATTGTGAT
TGTGATTAAACCATTTAAATTGTATTTTATTCAGTTTAGAAAGTATAGGT
CAGTTGGGCTACTTAAAAGGAATATTCCCTTAGTACAGACAAGGTCAACC
CTATGTACTTTTGTTAGAAAGGGGCCTCTACTCTAGGTATACGATAACCC
TCGTTTTCTATCCTTTTAGGTTTGGTTTCAAAATCGACGTGCGAAATGGA
GAAAACGCGAGAAGCAATCACCGGAAGGCAATTTTCATCATTCACCACAC
GATCTAATGCCACGCCCGTTAAATGAATTTCCACCACCGCCCCATTTCCA
CCATGGTTTACACCCTTCTGCCACTTCACCAATTCTACATTCTCCACCTA
GTATCATGATCCCGTCTAGACATCATCCATACAGAAACTCAGTCTCACCA
CCAGTACACCCTTGTTCGCCTTGTGATAAACGTCCACCGAGTTTCGGCGC
CCCACCATTGAGCCCACCCATCGGTTATTGCTACCCACCTAATGGCGGCC
CACCCCGCCCAAGATTAGATAGTTCAACGTATTATAAAAACTTGGAAAAA
GAATTTTTAGAAATGAAAAAATCCAGTATTAACGAACTTAGATTCCGCGC
ACATGAACACCACGGACCATTTATCGATCTTGCTCACCCAATCAGAAGAT
AGTAAATAAACCACTCGTCCAATCAAATGGCTAGTATTTTTTTTAATGAT
CCAATCGAAACAGACCCATGGTACATCACCGTCCAATCAATACAACAGAT
TCGAATGTTTTGTTTTTGAACAACAAAATCTTTCATGAAAAAGAAAAACG
AAAACAAATTTTTACATCATCAAAACATTGAACAAACACGACTTGCGATG
TCTGAGCTTTGGGAATTCCTTTTTAATTTGAATTTTTGTTTTTCCTAATT
TTTTTGTGTGTAAAATGTTTTTAAGTGTTATCCATCTTGTAATTTATCAA
AACTCTATTATTTTTCAAAGAGTTTATTATGGTCGATCGGTTATATTGGA
CCCAAAGGAAACTCTGCCCATCGACGGGGATGCGCCACTTAGGCTAAAAA
TGTTGACCTATTTCTTTGTCAAAATTAGCCGAGACGAGTGACTCTGAGTG
GGACTGAAATCCCAAAATTTTCTCCTAATTTTCCTAATTTTTATCAAATA
AGGCACTGTACGAAGGGACTAATATCTCAACTTTTTGAAAAAAGGCTCCC
ATGTCTCTTATTGACCAAAAAAAAGCGATTATATGTTAAACTATTGGTGA
ATCCTTGAGCTAAGATTTAGTACAAGGTTATCCTAGCCTCTTCCCCGTGT
ATTCCAGGCTTTATTTACGTTATAGATGGTCCCTTATGGAGCATCATTTT
TATAACCATAAATAAGTCGAATAATACACAGGGAATCCTTTACAACTATT
AACCATTCTGCATTCTGCATTCTGTTTTGTTTGTTCTTATAATGTTCTTC
AATTAGTGTTCTTGTTATAATTGTGTTCTTAGTCAATTTCAGTAAAGAAG
ATTGAATTTGTAAATAAGAAAAAGATCCAATACAGGGAACAAAATGTAAA
TAGAATTTTCACTAATATAAGAAATGGTACGATGAAATTACAAAG

Coding sequence (CDS) from alignment at sc0000061:474224..487068-

>TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=CDS|length=2763bp|location=Sequence derived from alignment at sc0000061:474224..487068- (Clytia hemisphaerica)
GTTTGGTTTCAAAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATC
ACCGGAAGGCAATTTTCATCATTCACCACACGATCTAATGCCACGCCCGT
TAAATGAATTTCCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCT
GCCACTTCACCAATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAG
ACATCATCCATACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGC
CTTGTGATAAACGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCC
ATCGGTTATTGCTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGA
TAGTTCAACGTATTATAAAAACTTGGAAAAAGAATTTTTAGAAATGAAAA
AATCCAGTATTAACGAACTTAGATTCCGCGCACATGAACACCACGGACCA
TTTATCGATCTTGCTCACCCAATCAGAAGATAGATGGAAGTGAAGTCGAT
TCACTTGACGATAAAGAAGACTTAGAAAAGCATTCAGACATCAGCAAAAA
AGGCGACCTTTCCGATGATGATGACGTCTTCTCATCATCCGACGAAAAAA
ATGACGGCGACAAACCTAGAAAATTACGACGTAGCCGAACAACATTCACG
ACATACCAACTACATCAGTTAGAAAGAGCTTTTGATAAGACACAATATCC
AGATGTTTTTACAAGGGAAGATTTAGCATTGAGATTGGACCTAAGCGAAG
CAAGAGTTCAGTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAAT
AAAGAAAAACATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAG
ACACCGTGGTTTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAA
TTTACGAAAAAGAAAATTCAAGTTTGGTTTCAAAATCGACGTGCGAAATG
GAGAAAACGCGAGAAGCAATCACCGGAAGGCAATTTTCATCATTCACCAC
ACGATCTAATGCCACGCCCGTTAAATGAATTTCCACCACCGCCCCATTTC
CACCATGGTTTACACCCTTCTGCCACTTCACCAATTCTACATTCTCCACC
TAGTATCATGATCCCGTCTAGACATCATCCATACAGAAACTCAGTCTCAC
CACCAGTACACCCTTGTTCGCCTTGTGATAAACGTCCACCGAGTTTCGGC
GCCCCACCATTGAGCCCACCCATCGGTTATTGCTACCCACCTAATGGCGG
CCCACCCCGCCCAAGATTAGATAGTTCAACGTATTATAAAAACTTGGAAA
AAGAATTTTTAGAAATGAAAAAATCCAGTATTAACGAACTTAGATTCCGC
GCACATGAACACCACGGACCATTTATCGATCTTGCTCACCCAATCAGAAG
ATAGATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACTTAGAAAA
GCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGATGACGTCT
TCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAAATTACGA
CGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAGAAAGAGC
TTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGATTTAGCAT
TGAGATTGGACCTAAGCGAAGCAAGAGTTCAGTTGGTAACAAAGAAGAAA
TACGAAGAAAGATACAGGAATAAAGAAAAACATACACAGAGAGACATCAT
GGTTCACCATTCAACAGAAAGACACCGTGGTTTCAGCATTGATGCAATTC
TTGGCAAAACAGAAACTAAAATTTACGAAAAAGAAAATTCAAGTTTGGTT
TCAAAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATCACCGGAAG
GCAATTTTCATCATTCACCACACGATCTAATGCCACGCCCGTTAAATGAA
TTTCCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCTGCCACTTC
ACCAATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAGACATCATC
CATACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGCCTTGTGAT
AAACGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCCATCGGTTA
TTGCTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGATAGTTCAA
CGTATTATAAAAACTTGGAAAAAGAATTTTTAGAAATGAAAAAATCCAGT
ATTAACGAACTTAGATTCCGCGCACATGAACACCACGGACCATTTATCGA
TCTTGCTCACCCAATCAGAAGATAGATGGAAGTGAAGTCGATTCACTTGA
CGATAAAGAAGACTTAGAAAAGCATTCAGACATCAGCAAAAAAGGCGACC
TTTCCGATGATGATGACGTCTTCTCATCATCCGACGAAAAAAATGACGGC
GACAAACCTAGAAAATTACGACGTAGCCGAACAACATTCACGACATACCA
ACTACATCAGTTAGAAAGAGCTTTTGATAAGACACAATATCCAGATGTTT
TTACAAGGGAAGATTTAGCATTGAGATTGGACCTAAGCGAAGCAAGAGTT
CAGTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAA
ACATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTG
GTTTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAATTTACGAA
AAAGAAAATTCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003372	XLOC_003372	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
Rx	TCONS_00005922-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005922-exon-sc0000061-1575043694:486908..487068	TCONS_00005922-exon-sc0000061-1575043694:486908..487068	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1575043694:484134..484411	TCONS_00005922-exon-sc0000061-1575043694:484134..484411	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1575043694:474224..475649	TCONS_00005922-exon-sc0000061-1575043694:474224..475649	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1510915933:486908..487068	TCONS_00005922-exon-sc0000061-1510915933:486908..487068	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1510915933:484134..484411	TCONS_00005922-exon-sc0000061-1510915933:484134..484411	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1510915933:474224..475649	TCONS_00005922-exon-sc0000061-1510915933:474224..475649	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1491911889:486908..487068	TCONS_00005922-exon-sc0000061-1491911889:486908..487068	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1491911889:484134..484411	TCONS_00005922-exon-sc0000061-1491911889:484134..484411	Clytia hemisphaerica	exon
TCONS_00005922-exon-sc0000061-1491911889:474224..475649	TCONS_00005922-exon-sc0000061-1491911889:474224..475649	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000061	supercontig	sc0000061:474224..487068 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299933	0.0835662	0.194057	0.213586	0.144456	0.0228302	90.2054	99.534	53.1672	50.9407	18.0153	21.873	5.71356	6.25912	1.86126	2.61101	17.9966	10.6488	3.84879	2.90742	10.3361	9.33556	3.19333	5.09176	6.30248	9.05307	8.46035	6.89724	0.0237787	0.0242267

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR017970	Homeobox_CS
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Blast

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BLAST of TCONS_00005922 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.919e-27
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 2

Query:  296 RKLRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQNRRAKWRKREK 484
            RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA+RLDL+EARVQVWFQNRRAKWRKREK
Sbjct:  326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388

The following BLAST results are available for this feature:

BLAST of TCONS_00005922 vs. Swiss-Prot (Human)

BLAST of TCONS_00005922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARX	1.919e-27	84.13	Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S...	[more]

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TCONS_00005922 (transcript) - C. hemisphaerica