Rx (polypeptide) - C. hemisphaerica

Overview
NameRx
Unique NameTCONS_00005922-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005922-protein ID=TCONS_00005922-protein|Name=Rx|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
LVTKKKYEERYRNKEKHTQRDIMVHHSTERHRGFSIDAILGKTETKIYEK
ENSNGSEVDSLDDKEDLEKHSDISKKGDLSDDDDVFSSSDEKNDGDKPRK
LRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQ
NRRAKWRKREKQSPEGNFHHSPHDLMPRPLNEFPPPPHFHHGLHPSATSP
ILHSPPSIMIPSRHHPYRNSVSPPVHPCSPCDKRPPSFGAPPLSPPIGYC
YPPNGGPPRPRLDSSTYYKNLEKEFLEMKKSSINELRFRAHEHHGPFIDL
AHPIRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003372XLOC_003372Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005922TCONS_00005922Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 101..163
e-value: 2.8E-26
score: 103.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 102..158
e-value: 8.8E-24
score: 83.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 99..159
score: 20.779
NoneNo IPR availableGENE3D1.10.10.60coord: 95..168
e-value: 2.7E-31
score: 106.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd00086homeodomaincoord: 102..160
e-value: 4.68667E-23
score: 88.8396
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 134..157
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 94..164

Blast
[Close]
BLAST of Rx vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.722e-33
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 0 
Query:   57 EVDSLDDKEDLEKHSDISKKGDLSDDDDVFSSSDEKNDGDKPRKLRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQNRRAKWRKREKQSPE 165
            E   L  KE+L  H + ++  D  +D    S+  +  +G   RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA+RLDL+EARVQVWFQNRRAKWRKREK   +
Sbjct:  285 EGGELSPKEELLLHPEDAEGKD-GEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQ 392
The following BLAST results are available for this feature:
BLAST of Rx vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARX6.722e-3357.80Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S... [more]
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