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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=transcript|length=1865bp GTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAAAC ATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTGGT TTCAGCATTGATGCAATTCTTGGCAAAacagaaactaaaatttacgaaaa agaaaattcaaATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACT TAGAAAAGCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGAT GACGTCTTCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAA ATTACGACGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAG AAAGAGCTTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGAT TTAGCATTGAGATTGGACCTAAGCGAAGCAAGAGTTCAGGTTTGGTTTCA AAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATCACCGGAAGGCA ATTTTCATCATTCACCACACGATCTAATGCCACGCCCGTTAAATGAATTT CCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCTGCCACTTCACC AATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAGACATCATCCAT ACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGCCTTGTGATAAA CGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCCATCGGTTATTG CTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGATAGTTCAACGT ATTataaaaacttggaaaaagaatttttagaaatgaaaaaatccagTATT AACGAACTTAGATTCCGCGCACATGAACACCACGGACCATTTATCGATCT TGCTCACCCAATCAGAAGATAGTAAATAAACCACTCGTCCAATCAAATGG ctagtattttttttaatgatcCAATCGAAACAGACCCATGGTACATCACC GTCCAATCAATACAacagattcgaatgttttgtttttgaacaacaaaatc tttcatgaaaaagaaaaacgaaaacaaatttttacatcATCAAAACATTG AACAAACACGACTTGCGATGTCTGAGCTTTGGGAATTcctttttaatttg aatttttgtttttcctaatttttttgtGTGTAAAATGTTTTTAAGTGTTA TCCATCTTGTAATTTATCAAAACtctattatttttcaaagagttTATTAT GGTCGATCGGTTATATTGGACCCAAAGGAAACTCTGCCCATCGACGGGGA TGCGCCACTTAGGCTAAAAATGTTGACCTATTTCTTTGTCAAAATTAGCC GAGACGAGTGACTCTGAGTGGGACTGAAATCCCAAAATTTTCTCctaatt ttcctaatttttatcaaataaggCACTGTACGAAGGGACTAATAtctcaa ctttttgaaaaaaggctCCCATGTCTCTTATTGACCAAAAAAAAGCGATT ATATGTTAAACTATTGGTGAATCCTTGAGCTAAGATTTAGTACAAGGTTA TCCTAGCCTcttccccgtgtattccaggctttatttacgttataGATGGT CCCTTATGGAGCATCATTTTTATAACCATAAATAAGTCGAATAATACACA GGGAATCCTTTACAACTATTAACCATTCTGCATTCTGCATTCTgttttgt ttgttcttataatgttcttCAATTAGTGTTCTTGTTATAATTGTGTTCTT AGTCAATTTCAGTAAAGAAGATTGAATTTGTAAATAAGAAAAAGATCCAA TACAGGGAACAAAATGTAAatagaattttcactaatataaGAAATGGTAC GATGAAATTACAAAG Run BLAST on NCBI protein sequence of Rx >TCONS_00005922-protein ID=TCONS_00005922-protein|Name=Rx|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
LVTKKKYEERYRNKEKHTQRDIMVHHSTERHRGFSIDAILGKTETKIYEK ENSNGSEVDSLDDKEDLEKHSDISKKGDLSDDDDVFSSSDEKNDGDKPRK LRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQ NRRAKWRKREKQSPEGNFHHSPHDLMPRPLNEFPPPPHFHHGLHPSATSP ILHSPPSIMIPSRHHPYRNSVSPPVHPCSPCDKRPPSFGAPPLSPPIGYC YPPNGGPPRPRLDSSTYYKNLEKEFLEMKKSSINELRFRAHEHHGPFIDL AHPIRR Run BLAST on NCBI transcript from alignment at sc0000061:474224..487068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=transcript|length=12845bp|location=Sequence derived from alignment at sc0000061:474224..487068- (Clytia hemisphaerica) GTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAAAC
ATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTGGT
TTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAATTTACGAAAA
AGAAAATTCAAGTAAGTGCGGGAATTCATATTTTTCACATCTGTTTCGCA
TCATTTATACAGATACAGTATACCCGTTAGCAGGCTGCATTACAAATTTC
TAAACATTAGAAATGCAACGGAAATGAGACTCTTGTTGGAAGAACCAAAT
GTATCAATTTTTTGGAAGGCTTCACCTTCACTAGAAGCTCATGGATGTCA
GAGAGTGATATAAAGGACTGTGACATTATAGCGTCTAAAGGCACAGGGTC
CACGCCACCGGGGTCACTTTTTTGCTAAGTAAAAATTTTTGGCTGCGTCT
CCTTTCATTGGCCTTTCACTTACAATTTCATGGCGCTCTGAAGGTATTAC
CCTCCGTTGCATAATTTCAACTTCCTTTATATCCCGCTCTGCGCTATAAC
TGGGTAGAAAAAAGAAACTTAGAAAATTATGGGATAATGATACATAATGA
ACTTATACTTTCAAAGGAAGAATATTGAAGGTTGGTTTAAATCAAGTGTC
TCGTGAGATTTGAACTAAAAAACTGATTCACATCCAATTAAATCTTTTAT
AAGAATTAGAAAACTAAACGAGAAAAAACAAATTTTGTAACGTAAAAACT
TAAAAAATCTTTGAATTATTGAGAAAGCCTAGATAGATAGTCTTAAAATC
CAGCAGACTCAACAACAAAGTGGTTGAGAAACTCTTAAGTTATACTTTTT
CAGCAAAATACTATTTCAAAGCAATATACAAAATTTGTAAATTTTCTTAC
AAAAAAAACGAAGCACATGCAGCAGTATCAGAGATTAATTATGGTTAAAA
AAACTATCCAATTAGAGGATTGATATTTAATTGATTGTGATACGCATCTG
TTAATTAGATGACCCATTAAATACCAATTAATTTGACATTATAACCACAG
AATCCTATTAACTATGCTAAATTTATAAACTTTTTGCTTACCTTTTTTGC
ATGAAATATGATTTTAATTATCCCCCTTGTACTGATGAATGGCGTTAGCA
CACGCTGTAAATTGATTTTATTGCTTTTTGGCTTGAAAATTAATATTTTT
GCGGATTTGATATACTGTACTGCTGATAGATTTATGGTTATTAAAGGTAA
TTATTGGCTCTATTTAGGCCTGAAAATTTGGTTCCGAAATATATTGCCTA
GGTATAAATCGTTTTCAGGGAAGCTTATTTTTTATCAAAATTCTCCCCAA
AACTGTTTGGTTGATTCAATAAACTGTAAACCATTAAAGTCATCTATAGT
CATTCTCATTTAAGTTTAATTTGTTCCTAAAAAACATTGATCTTGTGTTC
GCCAAAACTAATAATTAATTACCCATCCTTCTATTGTTTTTTAATTCGCG
TTTCATTGAATTTCAAAATGAACCAATCAAATCGTTTTACGTGATAGCAA
GTGGATGCGCAATAGAAAATCAATAATATATCCTTTTTTATAATTGGTTC
ATTTCCTTTGTTGCACACAGCCATTAATTAAACTGTTAAATATTATTAAT
TAAAACTGCTGCAAATAATGATACCCACCACACGAGATAATAGGTTATTG
TTTCAAGATTGGTTTATAAGACCAGACTTCGGGTAATAGAAGACTTTAAA
ACTTTAAAACTAAGCTTTTGGAGGATTTGTGATTAATTGATAAATATTCA
GTTATTCATGTTGAGCTATGATAAAAATGGTCCTACCTAGGAGTAAAATT
TATGATAACTAGGTAAAATTTTCTGCGATTTTTCATATGGTATTAATCAT
GCTATATTAATAAGTTTAATGTAAAAGTGAAAATTAATTCAAAAGAATTA
GAGGATTCATAATCAATTAGCGGTGTTATTTGAAGTGCAATTGATGTGAG
ATTTCCGCGTGCACATACCAATATTTGGGACTAATTTCAAATTACAAAAT
TTCATTTTTGTATGATTTATATATTGATTTGCTGATGCCAATAATTTGAT
TCACACAACTATTAAAAAAACAATTTAATTTAAGTAATTTTTTTCGCTAA
GTTTTTCCCACCGCAAAAGGCAATTTTAATGAATTAGTTGTTTTTCATGC
ATATTGATTTTATTCAAAATACAAATTAGTATGTAATTGCTTAGGTTTGT
ATAATCATTGACAATCAAATTTTATTTTAGTTGGTATTGGCCTTACATAA
AAATACTAAAACTTCGAGCAAAGTAGTCCCAATTAGGCAACTTACAAAAC
ATACGTCAAAATTCAAAATAACAGGACATTAAATTTTCCCTGTTTAGGAT
TTAAGGAAATTTGGAGTGCTAAGAATTTATTATCCCATCTTTAACCCATT
TCAAATTTATGAAAAAAATACTCTGAGAAAATACTCTGAGAAAAAAAACA
TGATTTAGTTTGATTTATACAGAAAAAAGGATTGCAAAGTCTCCAAATTT
AAAAAAATGAAAACACCAAAAAATGAAAACACCCAAAATGAAAACTTCAA
ATAATTTGAATGCACAGGGTGTGGTAAAAAAATTTCATTTTTCATTTTCG
TTTTCAGATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACTTAGA
AAAGCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGATGACG
TCTTCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAAATTA
CGACGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAGAAAG
AGCTTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGATTTAG
CATTGAGATTGGACCTAAGCGAAGCAAGAGTTCAGGTAAGATTCAAATGA
ATTTTCTTTTCGTATAAACAGTGCCTTAATTAATATTTTTACCTTGCATA
CAGATTAAGAAATATACAGACTAAGGAATTTAAGATCCTCCTCGCGTTTA
GTTAAGGTGGTAGTCTACCGAGAAATGGAAAATCATCGAAAAAATTGTCG
AATTTTGGTTTTTGGGTGTTTTGAGATCCTTAGGTCTTTCTGAACATCTC
CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTATTCAGAAAACCTGACACAAGCAAAAT
AAAGTATTTTACCCCCTGACTGATTTTACCCCCGTCTTTGGTTATTTTTA
GAATTTTTTTTTATTTTTAGAAATGTTATGAGTTGATATACATTTCCTGA
AAATTTCATTACGAAATGTAAAGAAGTTCTTGAGTTATTGCAAAAAATGT
GATTTTTTGACTTTTGAAATCTGGCGGTAGACTACCACCTTAAGATAATT
GCTTATTTATAACTATAGTTTAAATGATAATTATGAGTATCTTCTCGATT
TTGGAATATCATTTCAAGATAAAAGGCATACGAGACTTTAGCGTTGAGAA
CCCATGCCTTATAAGTTAAGGGAGAGTTAGGACCCCAGGTATAGTAAAAT
AGGGAATCGTTATACCACAAATACTATTTTGAGAATATTTGAAGCTATAT
GGGTAATTTGGGTTAGAAACAAACAAACAAAATATAATTAGATGGTTTGT
TAATGGATCTCACGATAAAAGAAAACCTAGTGAGATCAACTTTATAACAC
GACAGGTATCAAGAGTTTAGCCCCGCCATGCCATACCTCTTGTATTATAA
TCGTTAATTACCCTATCAATAGCAGATTAATTAAAGTCTTAAACCCAGAT
TAATTAGAGGGGAGTTAATTACTAACAGATATACTAATGAATTTTCTCCT
TCTTATTTCGTCTTTTATTAATTTGTTCACTAGACGATCGTTGTTATTGA
GCTCGTTAAGTAGGTTTTTATTGATCTTAATTGAATTTTTATTGACGGCC
TTAATTACTTTTTTTATTGAGAAAGGGAAGTACAGTGGAGTTAATCATAT
TAACCTTTTTTTGTTTTAATTTCAATAAAGTTAAATCAATAAACTTCAAT
TAATTAAGGTGTTAATCCATATTTTTAATTTAAATTTCCTTTTTGCTTCA
AATACTTTGAGAAGGTTTAAGTGAAACATTAATCAAAAAAAAAAGCATTG
TGGACAAAATTTGACTGAATTTTAAATTAGACATACTGTTTGATATTTAA
GGATCTCCAAAAAATTAACCTTTCCAGCGCGCAACTTTTTAAATTTTCAC
GCTGTCAGCGCGCAACATTTTTTCAGAAAATAGACATGTTCAGTTATTTG
ATCATAACTCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCAAAACATTACATCACCATATATCAAAAGAAAGCTTAGAACCTCTAC
TTTCCGTTTCTCTTTACTTCTACGGCTAGCAAAGAAGCCAATGGGAGAAA
TATAACTTAGAAGATCACTATGTCAAAAAGACGACTATACTCGTCCGCCG
GAACGTATGCTCGACGACTATACTCGTCCGCCGGGCTGAAAAGGTTAAGC
AAATTAAAGCAATCTTGAAAATCATATACATAAATCATGTATTCTTATAA
AAACGATATCATTATATATTAGATTTCCTATTAGACGGTATTAGGGGCTC
ATTAATTATCTATACCTGTTGATTTTAAAGAGATTTTTCTTTAATTAATT
TCAATTGGTTATGAGGTCAAGAAAATCTTAATTAGAATCAATTGAAATTC
CAATAGAATTAAATGATCTTAACGAGGTCTTAAATCGCTTAAGTTTTATT
TGTTTGTTTATATATTGGTCTTTAAAGCTTCTTTTAGTAGTGGCCCTTTT
TAAGTGGCTTAAAATTACTCGATTAATTAGAGCCATTGAGCCATTGCCTA
TTCTCGATTTCGGTATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGC
TGGGCATGTTCTTACAATGTTTATAACTTTTCGACGAATTGCAGCCTAAA
TCTTATGAACTGGGTTCTAATAAAAAATCAACGTATATTTTAGGATAAAA
TAATCGAAAAGGTCAATGAGGCGAGATAGTAATATATTTATAATAAGTTC
GGCCTTTAAATCGTCACAAATATGATATATGGTTTGTGCATTTCGATTGA
AATTGCATAACTTTGTCATTGAATTGTTTCAATTTCTCAATTTAAGCCTC
TAAACTGAGTCGTTTCCAGAATCTTACGTCAATCGAACGTTGAAAAACTG
TAACATTCTGAACTTGGATTTAAATCCTTTTAAATAGAAAATCTCAGTGT
GGCACCCTGCCAAATTGAATATGATAAAGTTCTTTTTTGAAAACAAAACA
GTCAAGTCAGGGTGTTCAACTCTTTGAAGATTAAATTCCTGTAGTGCCCC
CTTTTAACCTTTTACACAAAATGTGTGGACTTTATTGAAGCAAAAATGTC
GTTGAAAAATTAAATTAAATTCTATTCGGCCATATAATAGGCGGAAAAAG
TGGTAAATTCTTTTGTTAATTCTCAACAGTGCACAGTTAAGATTTTAATA
TTAACTTTTTTTATGAGAGTAAAGTTGGTTTAAAAAANGCAGTTAAGATT
TTTAATATTAACTTTTTTTATGAGAGTTGGTTTAAAAAAGAAAACCTAGG
GATGATTTAAATGATTGACACAAATTTCGATACCTTTGAAAATGTATACT
GGGTGTACTAAATGTTAATATAATCTGGTTATTAATATAGAAGCAACAGA
ACTGTGAAACAAAACTGTGTGTATGTCGCCTGACATGTCCAGCTAATGGC
ATACGTTTTTCAATGTAAATGCTGTGTACACTAATAGACCTATTATGTCT
GCCCAAGCTTGACGCTTTTTCATGTCTTTTTATTTAGCTGTTGATATATC
TAGCGTTTCTTTTGCACGCGAGTCGATGCCGCTAGATATGTTCAGAAAAC
TAGGTTGCATTTACTTAGGCATTAAAACAACCCTATCTCGTAAATGGCAA
ATTAAAGCATTTTTGACCGGGGACAGCCAAGTAAATTTTACATTTATTTT
CAAACCATTTTTGAGATCTAGCACACCCCTGTGTCACAGACCCGCTGGGG
CCCAAGCCCCACTGGAAAATTTGGTAAAAATTTCGTCCCCGGTGGGAAAA
GTACCTTAGAATTTCAGCCCCACTGAGAAATTGACTTTGATTTCATCCCC
ATTCGAAATTCATTGCTTAGAAATTCCCCTCCAAAACCATCCCCACTGGA
TTTGTCAACCTTGGAACAAAGGAATTTCTATCCCCAATGAGATTTCAATC
GAAATTTTTATCCCAGCTGTAGGAAAAAGTTTCACCGGGGCTGTGAGACA
GGGGTGTTCTAGAATAGATTATGGTGCCATATGCATTGAATTCTGTTTAA
AGGCAGTTAGAAAAGATAATTCGATCCCACCTACTACAGAATACTATATG
AAAAATCAAAAATCTCTGGTTAAGCAATTATTATGTCAAGCAGGGGACTT
ACAAATGCTAAGTCTTATTAATTTTCATTGCACTTATTGACTTAATAAGT
ATTATACGATTAGGATCATGGACTGATGTTTTAGCAGAATTAAAATGATC
GACGAGAAATGAGATTAAGACAAACTGTCAAATTTTCTTATCGTGGGTTT
GAATTCTCTTATTACATTGTTATTTCTAAAGAATCAATAAATTTTTGTCG
AGGCTTAATTGTTCTTATTGCTTGGAATTTTTAGCCTTAAATTGTTCTTA
TTCTGTTCTTGTTTAGGCGTTTTAGGCTTTTCACTCTTATTTTTAATGCT
AAAATACTTGAAATTCAGCATTGTCAGGCTTTGAGCTTCATTCATTCGTT
CTTATAAAATTGTTCTTAAGAAAATAGGATTAACACAAACTGTCAATTTT
TTTATGATTTCTAATTATATAAAAACTTCAACTTTTGAAAAATTGGCATA
TTCTCCTGCTTAATCTCTATTAATTGAATCTAGATAATTGTTTTTTTAAC
TTATCATTATTGCTTTGAAATGACCTAATATTGGTTTCGCGATTGGTTAT
GAAATGATTAATTGATTAGGATTAGATGAGTATAAACCACTTAGTAAAAT
TCCTTTGAATTTCATTAAAAAAACTATAAAGGTATTCCAAGTACATGTTT
TTTTATATAAGAACAAACTATATAAGAACATAAGGCTTCGATTGCCAAAA
AGGTAAGAACAAGTAAAGAACATTTTAAGGGTTTGCAGACTCTTAAATGG
CCAATTTTTAAAGAAAATGGACAAAAATGCTCACAAAATGGTGAAAATAA
GAACATCCTAAGAATTCAAATTTTTCAGATGTTCTTATACAAAAAACGTG
TAAAAGTTATCTTGCCTGAATTTTTCATAATTCAGCTAAAAAGAAGTTAT
TTGATAATAAAAATCAATGGAAAACACATTTTTAGGGAAACAAGATTTTC
ATTCACGCAAAATTTATGTTATTAAGCAGATTTAAGGATTAATCGTAGCA
AAATAATCTCTAAAATTAGGATTCTGATTTTATTAATCATCTTAGCAAAT
CAAAGAATATTTGTTCTTATGAGCTGATTAAGAGTTTTATCCTTAGAATC
TTTAACCCCGATTAGCACACGTGTTAAATTCCCACACATTGCGAAAAAAA
TTATGTTTTTGAATATTTTTTCTGATATAATAATCCTAATCTCAAATCAA
AACTTCAAATTATTTTTATTATTTTATAATTTGAAAAAATATTATTTCAT
GAAATCTGTCGTAATCTGACAATATGCAATTTTACAATAAATTTTATTGA
TTTTGTCTTTTAAGTAGATTTATTATATAGATTTTTGAGGTTTGGTTTTA
CGAATGAAATGAGTTTTTTGAATTTATTTAAAAATAGCACCTAATTGCCA
CAAAGTGACGGATTCAAAAAATGGATTATTTAAATCAGAACAGTGTTCTT
AACCCCTATAAACCAATAAAGCAATCAAATCTATACAACTTCATTAAATC
CATAATTATAATTATAACAGTCAGGAAGTATTAAAAGATTGATAAGACTT
TAATCTAAAATTTGATCTGATATATGCCAAAAAGGATTATTAATTGTGAT
TGTGATTAAACCATTTAAATTGTATTTTATTCAGTTTAGAAAGTATAGGT
CAGTTGGGCTACTTAAAAGGAATATTCCCTTAGTACAGACAAGGTCAACC
CTATGTACTTTTGTTAGAAAGGGGCCTCTACTCTAGGTATACGATAACCC
TCGTTTTCTATCCTTTTAGGTTTGGTTTCAAAATCGACGTGCGAAATGGA
GAAAACGCGAGAAGCAATCACCGGAAGGCAATTTTCATCATTCACCACAC
GATCTAATGCCACGCCCGTTAAATGAATTTCCACCACCGCCCCATTTCCA
CCATGGTTTACACCCTTCTGCCACTTCACCAATTCTACATTCTCCACCTA
GTATCATGATCCCGTCTAGACATCATCCATACAGAAACTCAGTCTCACCA
CCAGTACACCCTTGTTCGCCTTGTGATAAACGTCCACCGAGTTTCGGCGC
CCCACCATTGAGCCCACCCATCGGTTATTGCTACCCACCTAATGGCGGCC
CACCCCGCCCAAGATTAGATAGTTCAACGTATTATAAAAACTTGGAAAAA
GAATTTTTAGAAATGAAAAAATCCAGTATTAACGAACTTAGATTCCGCGC
ACATGAACACCACGGACCATTTATCGATCTTGCTCACCCAATCAGAAGAT
AGTAAATAAACCACTCGTCCAATCAAATGGCTAGTATTTTTTTTAATGAT
CCAATCGAAACAGACCCATGGTACATCACCGTCCAATCAATACAACAGAT
TCGAATGTTTTGTTTTTGAACAACAAAATCTTTCATGAAAAAGAAAAACG
AAAACAAATTTTTACATCATCAAAACATTGAACAAACACGACTTGCGATG
TCTGAGCTTTGGGAATTCCTTTTTAATTTGAATTTTTGTTTTTCCTAATT
TTTTTGTGTGTAAAATGTTTTTAAGTGTTATCCATCTTGTAATTTATCAA
AACTCTATTATTTTTCAAAGAGTTTATTATGGTCGATCGGTTATATTGGA
CCCAAAGGAAACTCTGCCCATCGACGGGGATGCGCCACTTAGGCTAAAAA
TGTTGACCTATTTCTTTGTCAAAATTAGCCGAGACGAGTGACTCTGAGTG
GGACTGAAATCCCAAAATTTTCTCCTAATTTTCCTAATTTTTATCAAATA
AGGCACTGTACGAAGGGACTAATATCTCAACTTTTTGAAAAAAGGCTCCC
ATGTCTCTTATTGACCAAAAAAAAGCGATTATATGTTAAACTATTGGTGA
ATCCTTGAGCTAAGATTTAGTACAAGGTTATCCTAGCCTCTTCCCCGTGT
ATTCCAGGCTTTATTTACGTTATAGATGGTCCCTTATGGAGCATCATTTT
TATAACCATAAATAAGTCGAATAATACACAGGGAATCCTTTACAACTATT
AACCATTCTGCATTCTGCATTCTGTTTTGTTTGTTCTTATAATGTTCTTC
AATTAGTGTTCTTGTTATAATTGTGTTCTTAGTCAATTTCAGTAAAGAAG
ATTGAATTTGTAAATAAGAAAAAGATCCAATACAGGGAACAAAATGTAAA
TAGAATTTTCACTAATATAAGAAATGGTACGATGAAATTACAAAG Coding sequence (CDS) from alignment at sc0000061:474224..487068- >TCONS_00005922 ID=TCONS_00005922|Name=TCONS_00005922|organism=Clytia hemisphaerica|type=CDS|length=2763bp|location=Sequence derived from alignment at sc0000061:474224..487068- (Clytia hemisphaerica) GTTTGGTTTCAAAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATC ACCGGAAGGCAATTTTCATCATTCACCACACGATCTAATGCCACGCCCGT TAAATGAATTTCCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCT GCCACTTCACCAATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAG ACATCATCCATACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGC CTTGTGATAAACGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCC ATCGGTTATTGCTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGA TAGTTCAACGTATTATAAAAACTTGGAAAAAGAATTTTTAGAAATGAAAA AATCCAGTATTAACGAACTTAGATTCCGCGCACATGAACACCACGGACCA TTTATCGATCTTGCTCACCCAATCAGAAGATAGATGGAAGTGAAGTCGAT TCACTTGACGATAAAGAAGACTTAGAAAAGCATTCAGACATCAGCAAAAA AGGCGACCTTTCCGATGATGATGACGTCTTCTCATCATCCGACGAAAAAA ATGACGGCGACAAACCTAGAAAATTACGACGTAGCCGAACAACATTCACG ACATACCAACTACATCAGTTAGAAAGAGCTTTTGATAAGACACAATATCC AGATGTTTTTACAAGGGAAGATTTAGCATTGAGATTGGACCTAAGCGAAG CAAGAGTTCAGTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAAT AAAGAAAAACATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAG ACACCGTGGTTTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAA TTTACGAAAAAGAAAATTCAAGTTTGGTTTCAAAATCGACGTGCGAAATG GAGAAAACGCGAGAAGCAATCACCGGAAGGCAATTTTCATCATTCACCAC ACGATCTAATGCCACGCCCGTTAAATGAATTTCCACCACCGCCCCATTTC CACCATGGTTTACACCCTTCTGCCACTTCACCAATTCTACATTCTCCACC TAGTATCATGATCCCGTCTAGACATCATCCATACAGAAACTCAGTCTCAC CACCAGTACACCCTTGTTCGCCTTGTGATAAACGTCCACCGAGTTTCGGC GCCCCACCATTGAGCCCACCCATCGGTTATTGCTACCCACCTAATGGCGG CCCACCCCGCCCAAGATTAGATAGTTCAACGTATTATAAAAACTTGGAAA AAGAATTTTTAGAAATGAAAAAATCCAGTATTAACGAACTTAGATTCCGC GCACATGAACACCACGGACCATTTATCGATCTTGCTCACCCAATCAGAAG ATAGATGGAAGTGAAGTCGATTCACTTGACGATAAAGAAGACTTAGAAAA GCATTCAGACATCAGCAAAAAAGGCGACCTTTCCGATGATGATGACGTCT TCTCATCATCCGACGAAAAAAATGACGGCGACAAACCTAGAAAATTACGA CGTAGCCGAACAACATTCACGACATACCAACTACATCAGTTAGAAAGAGC TTTTGATAAGACACAATATCCAGATGTTTTTACAAGGGAAGATTTAGCAT TGAGATTGGACCTAAGCGAAGCAAGAGTTCAGTTGGTAACAAAGAAGAAA TACGAAGAAAGATACAGGAATAAAGAAAAACATACACAGAGAGACATCAT GGTTCACCATTCAACAGAAAGACACCGTGGTTTCAGCATTGATGCAATTC TTGGCAAAACAGAAACTAAAATTTACGAAAAAGAAAATTCAAGTTTGGTT TCAAAATCGACGTGCGAAATGGAGAAAACGCGAGAAGCAATCACCGGAAG GCAATTTTCATCATTCACCACACGATCTAATGCCACGCCCGTTAAATGAA TTTCCACCACCGCCCCATTTCCACCATGGTTTACACCCTTCTGCCACTTC ACCAATTCTACATTCTCCACCTAGTATCATGATCCCGTCTAGACATCATC CATACAGAAACTCAGTCTCACCACCAGTACACCCTTGTTCGCCTTGTGAT AAACGTCCACCGAGTTTCGGCGCCCCACCATTGAGCCCACCCATCGGTTA TTGCTACCCACCTAATGGCGGCCCACCCCGCCCAAGATTAGATAGTTCAA CGTATTATAAAAACTTGGAAAAAGAATTTTTAGAAATGAAAAAATCCAGT ATTAACGAACTTAGATTCCGCGCACATGAACACCACGGACCATTTATCGA TCTTGCTCACCCAATCAGAAGATAGATGGAAGTGAAGTCGATTCACTTGA CGATAAAGAAGACTTAGAAAAGCATTCAGACATCAGCAAAAAAGGCGACC TTTCCGATGATGATGACGTCTTCTCATCATCCGACGAAAAAAATGACGGC GACAAACCTAGAAAATTACGACGTAGCCGAACAACATTCACGACATACCA ACTACATCAGTTAGAAAGAGCTTTTGATAAGACACAATATCCAGATGTTT TTACAAGGGAAGATTTAGCATTGAGATTGGACCTAAGCGAAGCAAGAGTT CAGTTGGTAACAAAGAAGAAATACGAAGAAAGATACAGGAATAAAGAAAA ACATACACAGAGAGACATCATGGTTCACCATTCAACAGAAAGACACCGTG GTTTCAGCATTGATGCAATTCTTGGCAAAACAGAAACTAAAATTTACGAA AAAGAAAATTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005922-exon-sc0000061-1575043694:486908..487068 | TCONS_00005922-exon-sc0000061-1575043694:486908..487068 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1575043694:484134..484411 | TCONS_00005922-exon-sc0000061-1575043694:484134..484411 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1575043694:474224..475649 | TCONS_00005922-exon-sc0000061-1575043694:474224..475649 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1510915933:486908..487068 | TCONS_00005922-exon-sc0000061-1510915933:486908..487068 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1510915933:484134..484411 | TCONS_00005922-exon-sc0000061-1510915933:484134..484411 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1510915933:474224..475649 | TCONS_00005922-exon-sc0000061-1510915933:474224..475649 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1491911889:486908..487068 | TCONS_00005922-exon-sc0000061-1491911889:486908..487068 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1491911889:484134..484411 | TCONS_00005922-exon-sc0000061-1491911889:484134..484411 | Clytia hemisphaerica | exon |
TCONS_00005922-exon-sc0000061-1491911889:474224..475649 | TCONS_00005922-exon-sc0000061-1491911889:474224..475649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000061 | supercontig | sc0000061:474224..487068 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0003677 |
DNA binding |
molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00005922 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.919e-27 Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 2
Query: 296 RKLRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLALRLDLSEARVQVWFQNRRAKWRKREK 484
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA+RLDL+EARVQVWFQNRRAKWRKREK
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
The following BLAST results are available for this feature:
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