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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059550 ID=TCONS_00059550|Name=TCONS_00059550|organism=Clytia hemisphaerica|type=transcript|length=721bp
ATCGTAGCTGGATTTCTCATTTTATAGTTTGGATGATCAAAAACTGAAAC
AAGATATAAACTTACTTTCTACAGATAAAGTTTACAGTTGTATTGTAGCA
GCTTATTTTCCATATCCGAGATGAAATCTGTTTACGCATTGGCAATCTTG
GCGGTTTTTATGGCGATGTGTGTGGACCAATCTTCTGGAAAACCCACTTC
TGAAAATTCCAGAACCTCTACATGCTTTTTCAACAGTCATTCATGCGGTG
ATTGGGCTAAAGAAGTTTGTGACGTGACAGGGAGAAGatacaaaaatatt
tgtcaTTATCTTAACGAGATGTGTGAAACCAATGGTGACATCCCACATCT
ACATATTTGCTTTTGAATAACTGaaagaCATGGCATAACCGAGGAAGAAC
CGATGAGAACGAATTATTGCTTCAGTGTCGCATTTCATAATCTTTTTGCT
CACTAGAAGCTTTCATCACAGCTTATTCATAGAACATCagtttataaaaa
ttaaaatcttggTTTTCATGTCATTAATATTAATATCAGGAATTTTACCG
AAATCTATGTATCACTTCTATTTATTTTTATCCTGTAATTTATGTAGATA
AGTCAAAAGATGATTTTAAGatatcaaaatataaattttaatcGAATTTT
AGTCTCCAACTTCGATAACTTAGTAAGATCCTACATGAATGTTGCTCATC
CTTGGGGTGCGGAACCCATTC Run BLAST on NCBI transcript from alignment at scaffold_329:594124..595638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059550 ID=TCONS_00059550|Name=TCONS_00059550|organism=Clytia hemisphaerica|type=transcript|length=1515bp|location=Sequence derived from alignment at scaffold_329:594124..595638+ (Clytia hemisphaerica)
ATCGTAGCTGGATTTCTCATTTTATAGTTTGGATGATCAAAAACTGAAAC
AAGATATAAACTTACTTTCTACAGATAAAGTTTACAGTTGTATTGTAGCA
GCTTATTTTCCATATCCGAGATGAAATCTGTTTACGCATTGGCAATCTTG
GCGGTTTTTATGGCGATGTGTGTGGACCAATCTTCTGGAAAACCCACTTC
TGAAAGTAagcgaaaaagaaaaacattctttACTTTAAATGGTATCTCGA
GGTCCTTAATGTAACagtatcaaatttttcagtgatatttctcatttttg
actTTAACTGCTGTATTTGGGTATAGTGCCTAGAATTCTTAATTTTATAC
AGTGAATATTTCGACTGTTATCATCGCCGGACCAGTCGTCTTGCTTTGTT
AGTTACAGATGAATAATTAACGGAACAAGGAAATAGCATAGAGACTCAAA
TTAGAAACAATCCCACCATGGCACTCTATTTATCGGAAAACCATCACACC
ATTGCACTTTTCAGATGCTTAGAATATTTTTGCATCgttaaatttcaact
tttttctacttttaGATTCCAGAACCTCTACATGCTTTTTCAACAGTCAT
TCATGCGGTGATTGGGCTAAAGAAGTTTGTGACGTGACAGGGAGAAGata
caaaaatatttgtcaTTATCTTAACGAGATGTGTGAAACCAATGGTGACA
TCCCACATCTACATATTTGCTTTTGAATAACTGGTAAGTTGGTTTTAATA
CCTGGGAACGCgtactcttttttataagactaGTAGACAGTAAACCTGGA
AATTGGAAATTAACAGTTCCTATAGCTGTCCCGGAGGAGGCGTATTGACC
TCGACGCTCGATGAAGAAGTCCGCTGAAGCCTGAAAAgtggaccttttca
aaaatatagGTTCCATTCGCATGAAATTTTGACTCTAAGCACCTAACAGA
CAAGACTCAGACCCTGTCTGCTGCAAAATcttatattttttccaaaatct
acACTCCTAAAAAGTCGTAGAAATGACAAAAAGTAGACCATGTCATAATT
CTTTCTCAGCTGTACTTAGCTGTTTGATTTGTCCCACAGAGCcctgattt
ttcaaatttctgggGTTACGAGACCATCTGTGCTTCTAAAATTAATAAta
ttatatttcatttttagaaagaCATGGCATAACCGAGGAAGAACCGATGA
GAACGAATTATTGCTTCAGTGTCGCATTTCATAATCTTTTTGCTCACTAG
AAGCTTTCATCACAGCTTATTCATAGAACATCagtttataaaaattaaaa
tcttggTTTTCATGTCATTAATATTAATATCAGGAATTTTACCGAAATCT
ATGTATCACTTCTATTTATTTTTATCCTGTAATTTATGTAGATAAGTCAA
AAGATGATTTTAAGatatcaaaatataaattttaatcGAATTTTAGTCTC
CAACTTCGATAACTTAGTAAGATCCTACATGAATGTTGCTCATCCTTGGG
GTGCGGAACCCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059550-exon-scaffold_329-1491911889:594124..594328 | TCONS_00059550-exon-scaffold_329-1491911889:594124..594328 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1510915933:594124..594328 | TCONS_00059550-exon-scaffold_329-1510915933:594124..594328 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1575043694:594124..594328 | TCONS_00059550-exon-scaffold_329-1575043694:594124..594328 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1491911889:594689..594856 | TCONS_00059550-exon-scaffold_329-1491911889:594689..594856 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1510915933:594689..594856 | TCONS_00059550-exon-scaffold_329-1510915933:594689..594856 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1575043694:594689..594856 | TCONS_00059550-exon-scaffold_329-1575043694:594689..594856 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1491911889:595291..595638 | TCONS_00059550-exon-scaffold_329-1491911889:595291..595638 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1510915933:595291..595638 | TCONS_00059550-exon-scaffold_329-1510915933:595291..595638 | Clytia hemisphaerica | exon |
| TCONS_00059550-exon-scaffold_329-1575043694:595291..595638 | TCONS_00059550-exon-scaffold_329-1575043694:595291..595638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:594124..595638 + |
Blast
The following BLAST results are available for this feature:
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