TCONS_00059449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059449
Unique NameTCONS_00059449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059449 ID=TCONS_00059449|Name=TCONS_00059449|organism=Clytia hemisphaerica|type=transcript|length=1526bp
ACTGAATCAGTTAGGGTCAAAATCACCCGGGAAAAtagataaacaaaata
aaattttttttgaaatttttttttgagatttgaaaTTTGGAGCTGAGACC
AAAGAAAGCTTTTTAATTTACTTGTTATTAGATACTTTCTGTTATATTAC
AATGAATACACAAAAAGTGAAAGCATTCTTATCGCAAAAAAATGTCAAGA
TtgtTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATCATACCACT
CAACCACCACAACTTCCATCAATTtcccaacaacaacaaaagaagaaatc
tCTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAACTAATTCAC
CACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACTTCATacca
gaaagaaaaattatcccCAAAGAATTATACAACGTTCCATCATCTTCAAA
TTCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTACTGAACCAC
CAAAGAAAAAGATCCgttttaattttgatagagacatttcactttttaaa
gaGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACTCCTGCCAG
AAGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATTATACCCAC
AAGATGGggaatacaaaaataaaactgTTAGAGAGCGCGTGACAAATGAA
ATGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGGTCTGGCAT
TGCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACTTATAAGTA
TGGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATAACCAagcg
aaaaagaagaaagaaaaggaaGAGAATGGAAAAGAACAAAGGAACAGATG
CTTTGAAAGGTTTTCTGAGActgaaaaaagattgaagaaggaaaaaaagc
cACGGCAGCAAAGgtcagataaaaaaaaatttgacagcAAGGAGATGATG
GATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAGGAAAAGGA
TCAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGAGCACGAGA
GGACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGACTCAAAAA
GCCTTGATCGAGAGACAAAACGAACAcattaaattattattaaaggAGAA
AGAATCATAGGGTGACGTTAAAAATCATCTTGTGAATTGTTTTCCTtcta
atattattttgatgttttcgtTTTGTATACAAACGTATTCCTTTCAAGGC
TTTTTAGTTTAGATGTTTTGTTGCAAGTATGAAATAAGTACTTTTGTTCT
CTCACTCTCTTCTTCTTTCAAAAAAGCTtctctttcaaaaaatcaagtca
aaaaatGGATTGAGAAATCATCTGTTCCATTTccttaattttattttatc
atttccTAGAAAAAACCAAAGTTTTTCCATAGAAAACTTCACATAAATTA
CTTTTGCTTCATGTTCtcgtcatttt
Run BLAST on NCBI

protein sequence of TCONS_00059449-protein

>TCONS_00059449-protein ID=TCONS_00059449-protein|Name=TCONS_00059449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MNTQKVKAFLSQKNVKIVSVVPSSSSKQCHHTTQPPQLPSISQQQQKKKS
LFIFPTSSSTSSSTNSPHQPVINLATQPLNFIPERKIIPKELYNVPSSSN
STTTTTASPSSQITEPPKKKIRFNFDRDISLFKEVTSCGTFLQKKGTPAR
RETWDKVAENMAKLYPQDGEYKNKTVRERVTNEMKEHRKKNSAELKGSGI
APEYNERDNLLDGLISMEDDYLHEREEENNNQAKKKKEKEENGKEQRNRC
FERFSETEKRLKKEKKPRQQRSDKKKFDSKEMMDFVKQKWDNDKLVKEKD
QSLLEREIALKEEEHERTNLLIASLKETIQTQKALIERQNEHIKLLLKEK
ES
Run BLAST on NCBI

transcript from alignment at scaffold_327:452899..454625-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059449 ID=TCONS_00059449|Name=TCONS_00059449|organism=Clytia hemisphaerica|type=transcript|length=1727bp|location=Sequence derived from alignment at scaffold_327:452899..454625- (Clytia hemisphaerica)
ACTGAATCAGTTAGGGTCAAAATCACCCGGGAAAATAGATAAACAAAATA
AAATTTTTTTTGAAATTTTTTTTTGAGATTTGAAATTTGGAGCTGAGACC
AAAGAAAGCTTTTTAATTTACTTGTTATTAGATACTTTCTGTTATATTAC
AATGAATACACAAAAAGTGAAAGCATTCTTATCGCAAAAAAATGTCAAGA
TGTAAGTTGTAAATAAATAATCTTTATTACTATTTTATATCAACAACAGC
AGACGTTTCTTTGCTGTTTCTGCTCTTGTTTGTATCTACTATAAAATAAA
GTTACATGTCTAGCTACTTTTTTGTTGTTGTTCTGTCAAAATCAAAAACC
AATAGATACTTTGAACAATATGAAACCAAATTTTTTATTTCTTATTTTTT
AGTGTTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATCATACCAC
TCAACCACCACAACTTCCATCAATTTCCCAACAACAACAAAAGAAGAAAT
CTCTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAACTAATTCA
CCACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACTTCATACC
AGAAAGAAAAATTATCCCCAAAGAATTATACAACGTTCCATCATCTTCAA
ATTCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTACTGAACCA
CCAAAGAAAAAGATCCGTTTTAATTTTGATAGAGACATTTCACTTTTTAA
AGAGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACTCCTGCCA
GAAGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATTATACCCA
CAAGATGGGGAATACAAAAATAAAACTGTTAGAGAGCGCGTGACAAATGA
AATGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGGTCTGGCA
TTGCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACTTATAAGT
ATGGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATAACCAAGC
GAAAAAGAAGAAAGAAAAGGAAGAGAATGGAAAAGAACAAAGGAACAGAT
GCTTTGAAAGGTTTTCTGAGACTGAAAAAAGATTGAAGAAGGAAAAAAAG
CCACGGCAGCAAAGGTCAGATAAAAAAAAATTTGACAGCAAGGAGATGAT
GGATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAGGAAAAGG
ATCAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGAGCACGAG
AGGACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGACTCAAAA
AGCCTTGATCGAGAGACAAAACGAACACATTAAATTATTATTAAAGGAGA
AAGAATCATAGGGTGACGTTAAAAATCATCTTGTGAATTGTTTTCCTTCT
AATATTATTTTGATGTTTTCGTTTTGTATACAAACGTATTCCTTTCAAGG
CTTTTTAGTTTAGATGTTTTGTTGCAAGTATGAAATAAGTACTTTTGTTC
TCTCACTCTCTTCTTCTTTCAAAAAAGCTTCTCTTTCAAAAAATCAAGTC
AAAAAATGGATTGAGAAATCATCTGTTCCATTTCCTTAATTTTATTTTAT
CATTTCCTAGAAAAAACCAAAGTTTTTCCATAGAAAACTTCACATAAATT
ACTTTTGCTTCATGTTCTCGTCATTTT

Coding sequence (CDS) from alignment at scaffold_327:452899..454625-

>TCONS_00059449 ID=TCONS_00059449|Name=TCONS_00059449|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_327:452899..454625- (Clytia hemisphaerica)
TGTTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATCATACCACTC
AACCACCACAACTTCCATCAATTTCCCAACAACAACAAAAGAAGAAATCT
CTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAACTAATTCACC
ACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACTTCATACCAG
AAAGAAAAATTATCCCCAAAGAATTATACAACGTTCCATCATCTTCAAAT
TCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTACTGAACCACC
AAAGAAAAAGATCCGTTTTAATTTTGATAGAGACATTTCACTTTTTAAAG
AGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACTCCTGCCAGA
AGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATTATACCCACA
AGATGGGGAATACAAAAATAAAACTGTTAGAGAGCGCGTGACAAATGAAA
TGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGGTCTGGCATT
GCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACTTATAAGTAT
GGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATAACCAAGCGA
AAAAGAAGAAAGAAAAGGAAGAGAATGGAAAAGAACAAAGGAACAGATGC
TTTGAAAGGTTTTCTGAGACTGAAAAAAGATTGAAGAAGGAAAAAAAGCC
ACGGCAGCAAAGGTCAGATAAAAAAAAATTTGACAGCAAGGAGATGATGG
ATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAGGAAAAGGAT
CAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGAGCACGAGAG
GACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGACTCAAAAAG
CCTTGATCGAGAGACAAAACGAACACATTAAATTATTATTAAAGGAGAAA
GAATCATAGATGAATACACAAAAAGTGAAAGCATTCTTATCGCAAAAAAA
TGTCAAGATTGTTTCTGTGGTGCCATCGTCATCAAGTAAACAATGTCATC
ATACCACTCAACCACCACAACTTCCATCAATTTCCCAACAACAACAAAAG
AAGAAATCTCTATTCATATTTCCAACTTCGTCTTCAACTTCGTCCTCAAC
TAATTCACCACATCAGCCTGTCATAAACCTTGCAACACAACCGCTCAACT
TCATACCAGAAAGAAAAATTATCCCCAAAGAATTATACAACGTTCCATCA
TCTTCAAATTCAACCACCACCACTACTGCCTCTCCTTCCTCTCAAATTAC
TGAACCACCAAAGAAAAAGATCCGTTTTAATTTTGATAGAGACATTTCAC
TTTTTAAAGAGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAAGGCACT
CCTGCCAGAAGAGAAACCTGGGATAAAGTTGCTGAAAATATGGCCAAATT
ATACCCACAAGATGGGGAATACAAAAATAAAACTGTTAGAGAGCGCGTGA
CAAATGAAATGAAGGAACACCGAAAAAAAAACAGTGCTGAACTTAAAGGG
TCTGGCATTGCACCTGAGTACAATGAAAGGGACAATCTTTTGGATGGACT
TATAAGTATGGAAGATGATTATTTGCATGAAAGAGAGGAGGAAAACAATA
ACCAAGCGAAAAAGAAGAAAGAAAAGGAAGAGAATGGAAAAGAACAAAGG
AACAGATGCTTTGAAAGGTTTTCTGAGACTGAAAAAAGATTGAAGAAGGA
AAAAAAGCCACGGCAGCAAAGGTCAGATAAAAAAAAATTTGACAGCAAGG
AGATGATGGATTTTGTGAAGCAAAAGTGGGATAATGATAAATTAGTTAAG
GAAAAGGATCAGTCTTTGCTGGAAAGAGAAATTGCTTTGAAGGAAGAAGA
GCACGAGAGGACAAATTTACTAATTGCATCCTTGAAAGAAACAATCCAGA
CTCAAAAAGCCTTGATCGAGAGACAAAACGAACACATTAAATTATTATTA
AAGGAGAAAGAATCATAGATGAATACACAAAAAGTGAAAGCATTCTTATC
GCAAAAAAATGTCAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037417XLOC_037417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059449-proteinTCONS_00059449-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059449-exon-scaffold_327-1575043694:454425..454625TCONS_00059449-exon-scaffold_327-1575043694:454425..454625Clytia hemisphaericaexon
TCONS_00059449-exon-scaffold_327-1575043694:452899..454223TCONS_00059449-exon-scaffold_327-1575043694:452899..454223Clytia hemisphaericaexon
TCONS_00059449-exon-scaffold_327-1510915933:454425..454625TCONS_00059449-exon-scaffold_327-1510915933:454425..454625Clytia hemisphaericaexon
TCONS_00059449-exon-scaffold_327-1510915933:452899..454223TCONS_00059449-exon-scaffold_327-1510915933:452899..454223Clytia hemisphaericaexon
TCONS_00059449-exon-scaffold_327-1491911889:454425..454625TCONS_00059449-exon-scaffold_327-1491911889:454425..454625Clytia hemisphaericaexon
TCONS_00059449-exon-scaffold_327-1491911889:452899..454223TCONS_00059449-exon-scaffold_327-1491911889:452899..454223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:452899..454625 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18558	1.33527	0.244007	0.238723	0.980068	1.17524	4.23233	4.3483	1.55396	2.58316	0.246876	1.16901	2.48275	1.7436	0.804881	0.765581	0.727996	0.279436	3.43376	1.65903	0.795979	1.47641	1.00587	1.0292	5.1707	6.14179	0.489869	0	0.697313	1.09666
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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