TCONS_00059416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059416
Unique NameTCONS_00059416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059416 ID=TCONS_00059416|Name=TCONS_00059416|organism=Clytia hemisphaerica|type=transcript|length=917bp
AATCAAATCTTTCTCTAACTTATGGAGAATTGTTGGTTCCTTGAAGATCA
AGCTAGAGAGACTCGACCAGTTTTTACCAGTTTTGTCATTTTACCTTCTT
AACCATAGTTTCATTGCAAGAAATCAATATGCAGAAAGCATTCAAATCCA
CAGTGCATTCAGACCAACAGGTCATCTCTAGAAAGACTATGCCAGAAGCC
ATGCAGGAAGCATACAATTCATGTGACGCAGTCCCAAACCTTGAGCGATT
GACCAAGTTTAGACATGATGGTAAAGACTCGTTGAAGTTCTACACTGATC
CTGATTACTTCTTCGAGCTGTGGAAAGAGAAGATCATTGCTGAATcgaat
gaaaaaagaagaaggaaaaagAAACGTGACAATCGTGGCAAGCGGCGTGA
TATGAACGAAAAGAAGCAAGTCAAAGGGGTGAAAAAGAAACAAGTCGCCA
AGAATATTCCTGATTGGGAGATCCAAAAGAAAGATACAGGCGGTGGAGGA
GCGGACCCTCTTCCTCCTCATGAAACATCTCCTGCTCATTCTGTACAGTC
ATATGACTCCACTCACTTGTCACCATCACGCCGACAATCTACCAAGAGGG
GATCTAATGCATCTTCCATAGGTCGACCATCTTCAGCTCCACCTCCACCA
CCTGGAGGAAGCCCAATCAGACACCCTGGTAGCcctccaccaccaccacc
accgaTGGCTGGTGGTCAAGGAATGTCACCGAGACCCATGTCTCCGCCGC
CTCCACCGCCAGTGTCCAACTCACCTTTACCACCACCACCTGAGTTCATG
GGAACACCAAGCTCCACACCAGTACCCCCACCCCCTCCACCACCCCCTGT
CACAGGAGGGGCTGTTCCACCACCACCTCCTCCTCCAAGTGTAGGAGGAG
GACCACCTCCACCACCA
Run BLAST on NCBI

transcript from alignment at scaffold_327:307355..308567+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059416 ID=TCONS_00059416|Name=TCONS_00059416|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at scaffold_327:307355..308567+ (Clytia hemisphaerica)
AATCAAATCTTTCTCTAACTTATGGAGAATTGTTGGTTCCTTGAAGATCA
AGCTAGAGAGACTCGACCAGTTTTTACCAGTTTTGTCATTTTACCTTCTT
AACCATAGTTTCATTGCAAGAAATCAATATGCAGAAAGCATTCAAATCCA
CAGTGCATTCAGACCAACAGGTCATCTCTAGAAAGACTATGCCAGAAGCC
ATGCAGGAAGCATACAATTCATGTGACGCAGTCCCAAACCTTGAGCGATT
GACCAAGTTTAGACATGATGGTAAAGACTCGTTGAAGTTCTACACTGATC
CTGATTACTTCTTCGAGCTGTGGAAAGAGAAGATCATTGCTGAATcgaat
gaaaaaagaagaaggaaaaaggTACTACGCTTTTGTCCCTGTTATACCCT
TTGGATTCGGACGTCTtttaaaattaaagaatttttatgtTTAGTGATTG
AATTGAGCCCAATGAGACAAAAGAGATTCATTATTTAAAACCTTCAAAAT
CTAATTAATGATGAGGATTGAAACATAAAGAGTAAGAatataaatttaca
aaaaaacctTAAGTTAGAAATTGATAATGCCTCACGGCTCAAATTACTCT
TACTTCATGTTCCTTTTTGCTACTTTCTCAGACCTTCAACTTACTTTTAT
TCACTCTATTTTTCTAGAAACGTGACAATCGTGGCAAGCGGCGTGATATG
AACGAAAAGAAGCAAGTCAAAGGGGTGAAAAAGAAACAAGTCGCCAAGAA
TATTCCTGATTGGGAGATCCAAAAGAAAGATACAGGCGGTGGAGGAGCGG
ACCCTCTTCCTCCTCATGAAACATCTCCTGCTCATTCTGTACAGTCATAT
GACTCCACTCACTTGTCACCATCACGCCGACAATCTACCAAGAGGGGATC
TAATGCATCTTCCATAGGTCGACCATCTTCAGCTCCACCTCCACCACCTG
GAGGAAGCCCAATCAGACACCCTGGTAGCcctccaccaccaccaccaccg
aTGGCTGGTGGTCAAGGAATGTCACCGAGACCCATGTCTCCGCCGCCTCC
ACCGCCAGTGTCCAACTCACCTTTACCACCACCACCTGAGTTCATGGGAA
CACCAAGCTCCACACCAGTACCCCCACCCCCTCCACCACCCCCTGTCACA
GGAGGGGCTGTTCCACCACCACCTCCTCCTCCAAGTGTAGGAGGAGGACC
ACCTCCACCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037402XLOC_037402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059416-exon-scaffold_327-1491911889:307355..307725TCONS_00059416-exon-scaffold_327-1491911889:307355..307725Clytia hemisphaericaexon
TCONS_00059416-exon-scaffold_327-1510915933:307355..307725TCONS_00059416-exon-scaffold_327-1510915933:307355..307725Clytia hemisphaericaexon
TCONS_00059416-exon-scaffold_327-1575043694:307355..307725TCONS_00059416-exon-scaffold_327-1575043694:307355..307725Clytia hemisphaericaexon
TCONS_00059416-exon-scaffold_327-1491911889:308022..308567TCONS_00059416-exon-scaffold_327-1491911889:308022..308567Clytia hemisphaericaexon
TCONS_00059416-exon-scaffold_327-1510915933:308022..308567TCONS_00059416-exon-scaffold_327-1510915933:308022..308567Clytia hemisphaericaexon
TCONS_00059416-exon-scaffold_327-1575043694:308022..308567TCONS_00059416-exon-scaffold_327-1575043694:308022..308567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:307355..308567 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.605	35.7744	13.885	13.1692	35.7013	32.8451	37.418	45.2772	36.6356	38.5708	29.4225	26.3344	29.8621	33.6778	24.1366	25.5892	40.1517	36.4067	25.6987	31.9109	26.1193	21.5902	26.3371	25.0471	41.3709	33.2798	17.3363	17.2359	20.5638	23.9861
Blast
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BLAST of TCONS_00059416 vs. Swiss-Prot (Human)
Match: WASF2 (Wiskott-Aldrich syndrome protein family member 2 OS=Homo sapiens GN=WASF2 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 3.365e-23
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:  108 VSLQEINMQKAFKSTVHSDQQVISRKTMPEAMQEAYNSCDAVPNLERLTKFRHDGKDSLKFYTDPDYFFELWKEKIIAESNE 353
            VSLQ IN +KAF+S+   DQ++  R ++P  + E YN+CD  P L  LT +R DGK++LKFYTDP YFF+LWKEK++ ++ +
Sbjct:   89 VSLQGINTRKAFRSSTIQDQKLFDRNSLPVPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKD 170
The following BLAST results are available for this feature:
BLAST of TCONS_00059416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WASF23.365e-2351.22Wiskott-Aldrich syndrome protein family member 2 O... [more]
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