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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059407 ID=TCONS_00059407|Name=TCONS_00059407|organism=Clytia hemisphaerica|type=transcript|length=953bp
ATAAAACGAAACGTTCCAAACAATCCAACAATGTCAATATTGTTACACAA
CAACAGACACCAGAATGGACAGATGCAGAATTACAACAAAAACTTATCGA
CATTGCTGAATCATCATCATCGAGTTCCCACCCAACTAAAGCATTGGAAT
TTCCAAGTCACTTGACAGCCAAACAACGAGCATTAGTACACGAAAAAGCT
GAAGAGCTCGGCTTAAGTCATCAAAGTATCGGTGAGGGCCAACAAAGACG
AATCGTAGTCgataagaagaaaaagaaagaaactgtGGATGTTGTGAGCA
GTGTTGCCCAACATGGAGAACTATCTGAAGCCACGTGTCTAACATGCTCA
GCACGCATGCCTAAAAGCAACCTACAACTTCATTCAATCAGATGTTTCAC
GAAAGCAGCAACTGAAAAGACCGTTCAAGAGAATGGGACCACTACAAGTG
GAGCTCGTCCTAAAATGTCAAGTAAGAGTAacgcaaagaaaaagaaaagc
aagACTAACGAGAACACAAAAAGTAAAGGTGGGCCGGCAGACCCTGATGA
AGATATTGATAGTCTGCTGGAAGAGTTCACCAAAATGAACAATTCATGTG
GTTTTGGCCAATGCAAAATAAGCATCAAAACTCTAGGCCAGAAATGCACT
TTCTGTTCCAAGATGTTTTGTTTGACACATCATATGGCGGAGATTCACGG
TTGTGGTCATGATATACGCATGCGCGCTAGACAAGATATTGCAAAGTATG
GCAGCGCAAAGCCTACACCCATGAACAGGACAAAGAAAGTTCAAGTGCAA
AAGAAGTTAGATAAGAAATTGGATGAGCTGCAAGGGGACAGAAAAAGGAA
AACTAAGAAGAAATGAAATCCTTTGCAGTTTTGTTGGGTTCATTTTGTTA
ACATCCCTGGCTTTTGATTGGTTTTGAGAAAGGAATGAAAATTTTGGTAA
GAA Run BLAST on NCBI transcript from alignment at scaffold_327:194124..195668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059407 ID=TCONS_00059407|Name=TCONS_00059407|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_327:194124..195668+ (Clytia hemisphaerica)
ATAAAACGAAACGTTCCAAACAATCCAACAATGTCAATATTGTTACACAA
CAACAGACACCAGAATGGACAGATGCAGAATTACAACAAAAACTTATCGA
CATTGCTGAATCATCATCATCGAGTTCCCACCCAACTAAAGCATTGGAAT
TTCCAAGTCACTTGACAGCCAAACAACGAGCATTAGTACACGAAAAAGCT
GAAGAGCTCGGCTTAAGTCATCAAAGTATCGGTGAGGGCCAACAAAGACG
AATCGTAGTCgataagaagaaaaagaaagaaactgtGGATGTTGTGAGCA
GTGTTGGTAAGAGACTAATCAATCTACACAAGCACTTTTACCGTTATTGA
tgggcaaaaaaaaatttaaagtttcaaaATGAATAAGCTTTTAGGCTTTC
TGTTCTTCATATTTTTGTTCTTTCCCCAAAAAAGGGGAAGGCATTccttt
tcaaagtcaaataaaaTTGGGTGTAGCCAGGATTTTTGAAACTCAGCATT
GGTGAGCTGTTAGTAAAACAGGTCCCATGTTATCGATGTATAGTTTGGCC
TCAAACTGTACTTGATTTAATCGCTAGTTTTTGACTAATGTGATTTCCTC
TCTTCTTTTCAGCCCAACATGGAGAACTATCTGAAGCCACGTGTCTAACA
TGCTCAGCACGCATGCCTAAAAGCAACCTACAACTTCATTCAATCAGATG
TTTCACGAAAGCAGCAACTGAAAAGACCGTTCAAGAGAATGGGACCACTA
CAAGTGGAGCTCGTCCTAAAATGTCAAGTAAGAGTAacgcaaagaaaaag
aaaagcaagACTAACGAGAACACAAAAAGTAAAGGTGGGCCGGCAGACCC
TGATGAAGATATTGATAGTCTGCTGGAAGAGTTCACCAAAATGAACAATT
CATGTGGTTTTGGCCAATGCAAAATAAGCATCAAAACTCTAGGCCAGAAA
TGCACTTTCTGTTCCAAGATGTTTTGTTTGACACATCATATGGCGGAGAT
TCACGGTTGTGGTCATGATATACGCATGCGCGCTAGACAAGATATTGCAA
AGTATGGCAGCGCAAAGCCTACACCCATGAACAGGACAAAGAAAGTTCAA
GTGCAAAAGAAGTTAGATAAGAAATTGGATGAGCTGCAAGGGGACAGAAA
AAGGAAAACTAAGAAGAAATGAAATCCTTTGCAGTTTTGTTGGGTTCATT
TTGTTAACATCCCTGGCTTTTGATTGGTTTTGAGAAAGgtgagtttttat
tttattaaagtaAACTGAACCCCGTTAGTCTCATGTATTAAGTTTTGAGC
CACCTTTTTGTATACACCCCCTTTCTTTCTTTCGTTCTAGTTATTTTCAA
GTATTGTTAAAATAGCTGTTCCCTCTCATTAGCCATTTTTATGTTGCAAA
CGGAAACTAAATAGTTTTATCTCGCGAAAAACACGAAGACCCAAATAAGA
AATCTGATAACAAAAGCAGCCTAAGAGCCTTGATGAGAAAAGTCTGTTTG
ATTACATTTCTCCTCTATTCCTAGGAATGAAAATTTTGGTAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059407-exon-scaffold_327-1491911889:194124..194429 | TCONS_00059407-exon-scaffold_327-1491911889:194124..194429 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1510915933:194124..194429 | TCONS_00059407-exon-scaffold_327-1510915933:194124..194429 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1575043694:194124..194429 | TCONS_00059407-exon-scaffold_327-1575043694:194124..194429 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1491911889:194736..195361 | TCONS_00059407-exon-scaffold_327-1491911889:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1510915933:194736..195361 | TCONS_00059407-exon-scaffold_327-1510915933:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1575043694:194736..195361 | TCONS_00059407-exon-scaffold_327-1575043694:194736..195361 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1491911889:195648..195668 | TCONS_00059407-exon-scaffold_327-1491911889:195648..195668 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1510915933:195648..195668 | TCONS_00059407-exon-scaffold_327-1510915933:195648..195668 | Clytia hemisphaerica | exon |
| TCONS_00059407-exon-scaffold_327-1575043694:195648..195668 | TCONS_00059407-exon-scaffold_327-1575043694:195648..195668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:194124..195668 + |
Blast
BLAST of TCONS_00059407 vs. Swiss-Prot (Human)
Match: SMBP2 (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 2.449e-17 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query: 546 DEDIDSLLEEFTKMNNSCGFGQCKISIKTLGQKCTFCSKMFCLTHHMAEIHGCGHDIRMRARQDIAKYG 752
+ED ++L+ K +N+CGF +C + TLGQ C CS+ +CL+HH+ EIHGCG R ARQ I++ G
Sbjct: 880 EEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREG 948
The following BLAST results are available for this feature:
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