|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059250 ID=TCONS_00059250|Name=TCONS_00059250|organism=Clytia hemisphaerica|type=transcript|length=5587bpRun BLAST on NCBI transcript from alignment at scaffold_320:137462..194674- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059250 ID=TCONS_00059250|Name=TCONS_00059250|organism=Clytia hemisphaerica|type=transcript|length=57213bp|location=Sequence derived from alignment at scaffold_320:137462..194674- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059250 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 214.542 bits (545), Expect = 1.090e-55 Identity = 171/577 (29.64%), Postives = 261/577 (45.23%), Query Frame = 2
Query: 1088 CDRQIKTGWYRF---KSPAGSIMPEQCPNINSCGTTLPIWLNGS------HPTEXXXXXXXXX---XXXYPGNCCAHKYNIDIKRCQDEVQGEDYFVYNLPATPGCPMSYCIG--NETR---CPDGERSPNGFSPGCTNEF-----PKLKGKPEVTVGSHDNRIRFTCDFEPEQIKNNAKYKVSWYTRTSDGNAELVKTETLHGNQTKSF-LQKTDGQKFCLQKNFFCEVSSVFPDSEDISDTK-RSDDFFAGIKISPTTIDLAENDAPKELKFETTVPITCDPFFP---DCAVDIEVAQTQNDG--------VLSFCKISFKKGPAGQVKT-----MEVVAKRDFIDDGDKSMKIKFHIPLTLFVPDWKCHAELPD-VTVHTKDVTTANCYSNGDPHITTFDNRRFDHYRVGDYVYTKSGARLFEVHVRTFVCAS----VSCNCGVAAREGDDVMVVDMCRDNVPRAR---FASTVEPQPGTKINRSPDGKVFEFSFPSGASVRFEARRWFGNTYYANIVVKLPSDDYKNTSGLCGIWDSSSTNDLTSKEGQIFQGGGQAPLGFTESWKLTPGSSL 2674
CD + GWYRF PA MP +C +N CGT PIWL+ P E+ T+ +CC + + ++ C + + VY L T GC M YC ++ R C E G C + P G+PEV V ++R+ C F+ KN+ + ++W S +++ VK E ++F L + DG L FC S F ++ + S +FFAG K+ P ++E+ L+ E+TVPI C F +C + +++ +T G LS C + + + T + A DF DGD+ I + + D+ + +PD + + KDV TA CY+ DPHI TFD R +D+++ G +V KS +R FEVHVR + C S VSCNCG A+EG D++ DMC + ++ F + + KI+ S G+ F SGA +R + W ++ ++ PS DY+NT GLCG +D + ND K G + F W++ PG S+
Sbjct: 55 CDHSLSPGWYRFLILDRPAE--MPTKCVEMNHCGTQAPIWLSLRDSETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVYLLQPTQGC-MGYCAEAISDARLHPCGSDETETGG---DCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAW----SRLSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKL-KTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNI---VVQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEW-----GMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPGKSM 606 HSP 2 Score: 151.369 bits (381), Expect = 2.229e-36 Identity = 126/463 (27.21%), Postives = 210/463 (45.36%), Query Frame = 2
Query: 2921 DGEDAVYFY-----DPIQPNKTIPSFPTPNGITEERAILNCDKALRESESGKVCLELVPDLDIDGIIESCVEDTKILDDTEVATSSAVGVMKDACEEVTLRNITLWKTDDTTGQLQPPKAVAEILCPNECSGNGYCANATCVCDEGYLSADCSIHEDDPPVLVKVAFNGLCDIRQKDCVRTRVIGRNFINSESLACQTKALKFTTDHSIDEEFNGEATIQSSELLSFAELSCDLPDVPVDIVFSSTQKGIPVGGFDIRLXXXXXXXXXXXXQFVVYDSKCLQCNATTKD-CLWKEDSCRVNNYCVGKGDAHPLDWCKVCSGE-NAFEPRY--DNLAPVFRPTE-PIKVFKDQEMSFVIPVFDPEQKKMKYELIEPPSPPPGMEISNGGVLTWTPKEENKTFTVWIKVTDICGNSSYSTYDFEVVNCPCQAFNGAECQRSDN-----GTISCVCPAGCTGKKYE 4264
D E+ YF+ + +Q + PS+PTP+G+TE + C + L S G++CL + +D +IE CV+D + DD A + V ++++ CE+ + + T++ ++ +V + CPN CSGNG C C C + S DCS D P + ++ G CD+++ +C+ RV G+ F S+ C+ L++ + E GE + + + C LP G P G + +++SN+G FSN V+YD C C D C KE+ C ++ C +GD +P C +C + + F + +N PV + + ++ F + + FDPE + + L S P G +S+ G+ W + T + +++ D C + T + V +C C NG C N G CVC G G E
Sbjct: 771 DLEELTYFFPEDHAEDVQ-QEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDDLSWA-EAGVALLENECEKRIVEE-GKYNTEEYGTSIEDILSV--LKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNS----SEWMPGEPIYTQTVFHNSRAVDCQLPTDVQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKIT-VIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL---DSGPEGASVSSAGLFMWK-TDLLTTQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCE 1216 The following BLAST results are available for this feature:
BLAST of TCONS_00059250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.