TCONS_00060072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060072
Unique NameTCONS_00060072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060072 ID=TCONS_00060072|Name=TCONS_00060072|organism=Clytia hemisphaerica|type=transcript|length=514bp
TTTGACACTCTATTGAATGGCTAATGCTGATATGTGTTTGGCATGCTTGA
TGACTACACATATGCCAGATATTACAGTGTTTCAAAAAGATCTAAGGTAG
AAATAATGATCCATCTCTAATCAAAAAATCTactcaaatttagtttttgc
atTTACCATAACTGGAAATATTTGTTCAAAGATTTACATACATGAAAAGA
TTTTTACTATAATATGGACGAAATAAAAGTATGAGTAAAACCAAAATGAA
GAGAATACAAACACAACACAGCATAAAAACAGAATCCTAGCTATAGTTAT
TCTAAATTATGTTCAAAATCTGTAATTCAAGCTTGCTTTTCTCTTTACTA
TACAATGCAGCATATAATGTACAGCAATGAAATAATATCAACACCGTCCT
TGAAAAAAAATGCATCAAAACTAAgccataaaaaatttcaaacagtatAG
TACCTTTTTCTGCCTTAAATCTttcttatcattttttaataactgtcttc
aatctcaaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_333:65470..65983

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060072 ID=TCONS_00060072|Name=TCONS_00060072|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at scaffold_333:65470..65983 (Clytia hemisphaerica)
ttttttttgagattgaagacagttattaaaaaatgataagaaAGATTTAA
GGCAGAAAAAGGTACTatactgtttgaaattttttatggcTTAGTTTTGA
TGCATTTTTTTTCAAGGACGGTGTTGATATTATTTCATTGCTGTACATTA
TATGCTGCATTGTATAGTAAAGAGAAAAGCAAGCTTGAATTACAGATTTT
GAACATAATTTAGAATAACTATAGCTAGGATTCTGTTTTTATGCTGTGTT
GTGTTTGTATTCTCTTCATTTTGGTTTTACTCATACTTTTATTTCGTCCA
TATTATAGTAAAAATCTTTTCATGTATGTAAATCTTTGAACAAATATTTC
CAGTTATGGTAAatgcaaaaactaaatttgagtAGATTTTTTGATTAGAG
ATGGATCATTATTTCTACCTTAGATCTTTTTGAAACACTGTAATATCTGG
CATATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTC
AATAGAGTGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037787XLOC_037787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060072-exon-scaffold_333-1491911889:65470..65983TCONS_00060072-exon-scaffold_333-1491911889:65470..65983Clytia hemisphaericaexon
TCONS_00060072-exon-scaffold_333-1510915933:65470..65983TCONS_00060072-exon-scaffold_333-1510915933:65470..65983Clytia hemisphaericaexon
TCONS_00060072-exon-scaffold_333-1575043694:65470..65983TCONS_00060072-exon-scaffold_333-1575043694:65470..65983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:65470..65983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.752226	0.727328	0.733269	0.598438	0.235991	0.168745	0	0	1.19586	1.18781	0.469667	1.61633	1.28936	1.53096	0.624163	0.646576	0.573857	0.921607	0	0	5.05136	6.66498	1.30889	1.13499	0	0.154356	2.57272	0.307714	0.618276	0.170867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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