TCONS_00059176 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059176
Unique Name	TCONS_00059176
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2301

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_319:12434..27562-

transcript sequence

>TCONS_00059176 ID=TCONS_00059176|Name=TCONS_00059176|organism=Clytia hemisphaerica|type=transcript|length=2301bp
GAGGGTGGCAGAGTAGCGAAACCACGtggttttgtttactttttgtttta
aaaacgaaagtgaagaTCGTATTTTGCGCTCAAAATGCTAGACTGATTGC
GACACAACACCAtccattttgcaaattttgctttcaagaCCAGATTTTTG
CTCTCTTGTTGCAAgATATATAGCAGAATGTGGGATATTGAATATTTGCC
TTTGATTTTGGAAAATCCAGTGCCAAGTGACATCTCAATTTCACGTTCTC
AAAAGCCAAAATATATTGGAAAGCTTGCTGAAGAATTGAAGATTCAACCA
GAGGAGgTTGATTATTATGGAAAAACAAAGGCAAAAGTTGGTCTCTCCAT
TCTTGAAAGATTGAAGGATCAAAAGGATGGAAAATATGTTGTGGTTGCTG
GaatAACTCCAACTCCTCTTGGAGAAGGCAAAAGTACAACAACTATTGGT
CTGGCCCAATCACTTAGCTCTGCATTGAAAAAGCAGTGTTTTGCATGTGT
TCGTCAGCCTTCCCAAGGACCTACATTTGGAATTAAAGGAGGAGCTGCTG
GCGGGGGATATTCCCAAGTCATCCCTATGGAAGAGTTCAATCTGCATTTA
ACAGGAGATATTCATGCCATAACCGCTGCAAATAATCTACTTGCTGCTGC
CATCGATGCACGAATCTTCCATGAATCTACTCAATCAGATAAGGCCCTCT
TCAATCGACTTTGTCCAAAGAAAAAAGGGATTCGAGAATTTACTCCAATT
ATGTTGCGCAGATTAAAAAAATTGGGAATTGAGAAGAGCAATCCTGATGA
TTTAACAGACGAAGAGAAAGGCAAATTTGCAAGATTGGATTTCGATACAA
GTACCATTACGTGGCAAAGAGTACTCGATACCAATGACAGATACCTTCGG
AAAATTACTGTGGGACAATCACCAACTGAAAAAGGAAGAACTAGGGAGTG
TCAGTTCGATATCACTGTAGCAAGTGAAATCATGGCTGTTCTCGCCTTAA
CAACTGACCTTCGTGATATGAGAGATAGATTGGGAAACATGGTAGTTGCA
AGCAACAAAGAAGGAATGCCAATTACTGCTGATGATCTGGGTGTGGGAGG
AGCATTGACTGTCCTCATGAAAGATGCTATCAAACCAAATCTAATGCAAA
CTTTAGAGGGATCACCAGTGTTTGTTCATGCAGGtccttttgcaaatatt
gctcATGGAAATTCATCCATCCTGGCAGACAAAATAGCATTGAAGCTGGT
TGGTCAAGATGGTTTTGTTGTGACTGAATGTGGATTTGGAGCTGACATTG
GGATGgagaaatttttcaacatcAAATGCAGATACAGCGgACTTCTACCA
TCATGTGTGGTACTTGTAGCGACAGTTCGTGCTCTCAAGATGCATGGCGG
TGGTCCTAAAGTTGTTGCTGGTTCACCGTTACCTGAAGCTTATACAACCG
AGAACATCGAACTTGTGGAGAAAGGCTTCTGTAACTTACGTAAACAAATC
GAAAATGCGCTCTGCTTTGGTGTACCTGTTGTAGTTGCAGTCAATAAATT
CCATACTGACACAGATGGTGAGATTAACAAAATGATCAGCCTTTCCAAAG
AAGCAGGAGCTTTTGATGCTGTCCTTTGTACTCATTATGCTGAAGGAGGT
CAAGGTGCTGTTAATTTGTCCCAAGCAGTTATTAAAGCGTCCGAAGAAAA
AACGAATTTCCGATTTCTGTACGATTTGAAGcTTCCTTTGGAAGagaaaa
ttgaaatcattgccaAGAGAATTTATGGTGCAGATGGCGTCTCATTCTCT
GATCAAGCAAAAGAAAGTTTGGCGCGCTATACTAAACAAgGTTTCAGTGA
ACTACCGATCTGTATGGCAAAGACGCATTTGTCATTGTCTGATAACCCTG
AACTGAAAGGCGCTCCCACAGgCTTTACTCTCCCTATTCGTGACGTCAGA
GCAAGTGTTGGTGCAGGCTTCGTCTTTCCACTGGTGGGAACTatgaGTAC
GATGCCAGGTTTACCAACACGTCCATGTTTTTATGACATCGACCTCGATC
CCGATACCGAAGAAGTTCAAGGTCTCATGTAAAAAATGACACCGAACTAG
ACTGACTGAAACTGCtgaacatttttttcaagattttattattgtagatt
ttcatttttgtatcacttttttttttaatacataGAAATTTAGTAGTATT
TTATATATCTTTCACCTTAAATGATTTacacacttttttcaaataaaatt
cataTTCTTGGATAAATCATTTTGAGTTCTTCATCGCCAAAACATTCGCA
G

Run BLAST on NCBI

transcript from alignment at scaffold_319:12434..27562-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059176 ID=TCONS_00059176|Name=TCONS_00059176|organism=Clytia hemisphaerica|type=transcript|length=15129bp|location=Sequence derived from alignment at scaffold_319:12434..27562- (Clytia hemisphaerica)
GAGGGTGGCAGAGTAGCGAAACCACGTGGTTTTGTTTACTTTTTGTTTTA
AAAACGAAAGTGAAGATCGTATTTTGCGCTCAAAATGCTAGACTGATTGC
GACACAACACCATCCATTTTGCAAATTTTGCTTTCAAGACCAGATTTTTG
CTCTCTTGTTGCAAGGTATTTTGAATTTATTTTTCAGATGCACCTATAGA
TACTATATTGTATTAAAAAAAAAGAAAAAGTAAGGCTGTTGATTGGGTTT
GATTTGACATGATCGACTGACCGACAGAATCAGAAATCTGGCGTCGACAG
GGTTGTTCTCCTCGATATGGGAAAAACACATTTCGCTAAATGCTCAGAGC
GCGACGGCCCATTTTCCCTTTCCTATCTTTCACCTTACCTGTTATTTCTA
CTTTCTGAGACTTAGTTTCTCATTTCTGACTGAGTTTTGCTATTTTGACT
TCTGCCTATGCCCCGGACAGTCCGGGTTTTTTTTGATGCGTGCCCGGGGT
CCGTATTATTTGTTTTTGAGAAACTACCCCGGACGCCGCTTTTTATAGAA
TCGCTGACCGCGCGGGCTTTTTTCTATACGTCCGGGGTAAATTTATGGCG
CAAAAATTGGAGCCCCGGACATAGGTCCGGGGAAAAAGTTATTTTTTTCA
GACCCCAGACATTTGCCCCGGACTGTCCGGGGCATAGGCAGGGTCGTATT
TCGACCAGTCTTATTTTTGCACCGAGTGGGATTCGAACCACCACCAAAGA
AAGACCTTCTGATTCGGAAGCCAGCGCTCTATCCGTTGAGTCATCGCCGC
ACAGCAAAATCACGCAATTCATAACATATTATACCGAACTGGTAAAAGAC
GGGGGTAATGTTATTATAATATGGGTAAAACCTGACTGAAATTCGAGCCG
TTACTAGCAACCCTGACCCTACTAATGGCCCAGTACCCCCTGAATCACGG
AATGACGGATAAGAAAAATTATCAGGGAAAAAAATTGTTCGTCGCCCTCT
GAGCAATCAGCGTAATCTGGAAAAACCCTTGAGTCCATTTTTAGCATTTT
TGCAATAACCCAGACGTCTGCGCTTGATAGGATCAATCATCGGAACGGCT
CGATGACGGATCGATATGTGATCGATGGATTACTTAAGGATCCGGATACT
ACCGAGGTCCCGGGGGTCCAATTGGTGCCCACTGGTCAGGGGGGTGTGAG
GGTACAAGTTTGCACCGTTGAGGGTCCTTCAAAGCTCCTCAAAGTGTTGT
CAAAAGCCGGCAAAAATTGTGAAAAATGACCTCCTTTGCAATGAAGTATA
AGCCTGGATGGCTAGAAGTCAATCTCCTTGGTAGGATTTGAAGCCAACAA
ATCCTACCAAAGTTGCGCGGCCTTGAGCGGCTCGCCTGGTTTTTACACAA
ATGACAGATTGAAACTAAAATTTACCGCTAAATTTCGAAAAAATATCAAT
TGTAAACAAAGGAATTGCTAGATTCAATCTGTCGTCAAAAATGCGGCGCA
TTTTTTAAGGCTTCACTTTTTCTTACCTGCGAAAGGTTAGAGATTGAACT
CTAGCCCTTCGGGCTTTAAAACTCAAGGCTCCTTTGGGTACCAGCCCCGG
TGGGACCAATCGAAGCCTCTACAGCCCCCACAGCCTACCACAGCCCTTCG
AACCCCTTTGGATACCCTCTGCCTTGCTTTCCCTTAAAGCCAACACCCTT
CATCAGTCATCCGAAGCCTTGGAAAGGCGGAAAGGCTTGAAAATTGGTCA
AAATTGGAAAAAGATGACCTCCTTGGGTACCACCGCAGACGGCCCCTGGG
GTCCCGGCCGGTGTGCCGGGGGTCCAATCGGTGCTCACTGGTCAGGGGGG
ATGTGAGAGTACATGCCTGCACCGTTGGGGGTCCTTCAAAGTTCCTCAAA
GTGCTGTCAAAAGCCGGCAAAAATTGCCAAAAATAACCTCCTCAATTGAG
GCTGCTACACCCCTTTCTCACCAGGAAAATCGCTGTTGAGACCAATTGAG
ACCTCTACAGCCCACCACAGCCCCCCCCATAGCCATTCGGACCCCTTCGG
ATACCCTCTGCCTTGCTCTCCCTCAAAGCCAGCACCCTCCATTAGTGCTC
CGAAGCCTTTAAAAGGCTTGGAAAGGCTTTAAATATAAAAACTAGATTGT
AAGGGAGATTCTAAAAAAAATTGCAGTTTTCTTAGACGACTACGTTATAT
GTTTTTGCAAACTTGATGTAAAATTGTCTAAACTTTCATGGCATGTTCAT
TTTTTATTTAATTTTCTTTTACTCTAGATATATAGCAGAATGTGGGATAT
TGAATATTTGCCTTTGATTTTGGAAAATCCAGTGCCAAGGTTTGTATCCT
GACGTATCACTAATTGCTGAATTGAATACTGAGACAACAATGATAAGAAG
TACATTTTGTAATTTTGGGACTAACACATTCTCTTTTTTAGTGACATCTC
AATTTCACGTTCTCAAAAGCCAAAATATATTGGAAAGCTTGCTGAAGAAT
TGAAGATTCAACCAGAGGAGGTGAAAAAAAGAGTTTATTCAAACTTATAA
TTTTTTTGTAATCCAGGCCATATTTTAAGGTAGATGGTTTTTCCACTAAA
CAGGCTGTTTTAACCAATGTTTTAGTGATTTTAGTGATTTTAGTCTGATA
ACAGGACACTAAAAGGGCATGAAAAATGGCCTGTAATCTTACTAGGTCAA
ATATGAAACGTTTTATCAGGTGACTTTTTATACTTTTAAAGTTTGATGTA
AAACTTGTACATCCTAATATATACTCACCATGGCATTCTAAATCTATAGG
CCTAGCAAGCGTGCAGCGACTTCGATTTTGTGGGGGTCTAATTTTTCGAA
GTCATTGCATTGATACTAGTACAAAATGTACCAAATAACAGAAATTTTAG
TTGAAAAATAAATTCTTTAATATATATTTGTCCTTTGTTTTTAAAAGGTT
GATTATTATGGAAAAACAAAGGCAAAAGTTGGTCTCTCCATTCTTGAAAG
ATTGAAGGATCAAAAGGATGGAAAATATGTTGTGGTTGCTGGGTTTGTAT
TTTGATAATCTTTTGTAATTTTTGGTATTCCTATTACAGTGAGCCCTAGT
GTTGCAACTGAAAGGGATAGAAATATTTCTTCCAAAACAGCGAGATTACC
CATACTTATCTTTTGGCTTGAAAAGCTAGACGGTACAACATTTTTAAATC
AAAAGAGATCATTTGTTTGAAAAGGAAATTTGGGAATTAATTTTTTTCAA
ATTTCAGAATAACTCCAACTCCTCTTGGAGAAGGCAAAAGTACAACAACT
ATTGGTCTGGCCCAATCACTTAGCTCTGCATTGAAAAAGCAGTGTTTTGC
ATGTGTTCGTCAGCCTTCCCAAGGACCTACATTTGGAATTAAAGGTATGT
TAATCTATCTATCAATAAAATAAATTATTATATGATAAAAATTTGTGTTT
TCTTGCTATGTATAAAGATAATAATGTATAAGAAATAAACAAAGAAATTT
ATATATAATTACAAAATAAGATGAATAAAGATCTTCTAAACCAGACCTAA
AATGACTAAGGCTGTAATGATATACGTTTTCAGGAGGAGCTGCTGGCGGG
GGATATTCCCAAGTCATCCCTATGGAAGAGGTAACGAAATTGTGTGCTTC
TAAAGTTTCTCTTTATAGGACTTTCCACGTAATAATAATGATATGGCTTG
TCAGTTTATGGGCTTATGAATTCATACTATTAATGACGTCATAATCATTT
TTTGCAGTTTTTCACGAAAAATGAGCAAAAACAATTAGGTTACACCTCAG
GCTAGAAACTACATCATAGTACCCTTCATGTTCAGTCATTATTTTGGTAA
TTTTCTGTCAACTAATGCAATCTAAAAATTATGATAATCTTCAGTTTTTT
TTAGATATGTCATAACTAATCCGAGACCTTTCCTATTTTCAGTTCAATCT
GCATTTAACAGGAGATATTCATGCCATAACCGCTGCAAATAATCTACTTG
GTAAATATTTAATAATAAATATTTCTTACAAGTAAGTAAAGATTTTCTCT
GTAGCTGCCTCGTGGTAAACATAAAACTTATCTAGAATTCTAGCCCTATT
TCACTAAGAAATGCTGAGTCTACAGAATAAGCCAAGTACCACTAGTGGGT
TTGTGACAATTCAGATTGAAAGTTATTAATTTTCAAGAAAAACTAGTTTT
GTAACAAATGGTTTGAGTCAACTTTTATGTTCTTTTCTAGCTGCTGCCAT
CGATGCACGAATCTTCCATGAATCTACTCAATCAGATAAGGTGATGCATA
GTTTTACAATATTGTCCATTTTCTGACCAGCAATAGCATCGTTACCAAAA
GATTCTCTGCTTATTTTGTTTTCCATTCATCACAATATCTCACCACATAA
TCCATTAAAGAAGCAATGGCCAAGTGGTCAAAGGTGTCAGTGTTTCAAAC
CAGGGATTTGCAGTTCGAATCCTTGCTCCTTCCAATGTTCCGTTCAGCTC
ATAGATAGCCGAGGCAGCTGGCCGTGGACCCTGTGAAAACAATCGAAAGA
CTGCCTAAAAGTCCTAGATTACTGGGTTTTTAGACTGGGCTACCTACGTT
AAATATTGACTCTATCTAATCAACAGTTAATTAGAATATAAAAACTATGA
AATCAACTTATGTATTGAAGTTCCATTTGAAAAATAAAGATTCTTCTTTA
TTGTAGGCCCTCTTCAATCGACTTTGTCCAAAGAAAAAAGGGATTCGAGA
ATTTACTCCAATTATGTTGCGCAGATTAAAAGTAAGTATCATTCAGATTT
CAGCATGATGCTTTTAGTAAATTATAATTAATATAATAAAATATTACTTT
TTAGTAACAGTTGTGAAATTTCAGGGCTTTGTATGATGAAAGAGGTTGCT
TTTTTTTCACCGAAGATAAGGGATATTATGCCTTCCCTGATTTCTCATTA
CTGTATAATTCCTCAAGAAAAGACTCCGACCATCAAAAAATTTCAGGCCC
TGGTACTGCTTTTGGTTGTTATTTAGATATAAGTCATGTTTTTAATAATC
TTTATTTAAATCTTCGTAACTGTTCAATTTCTATTTATTCAAAGAAATTG
GGAATTGAGAAGAGCAATCCTGATGATTTAACAGACGAAGAGAAAGGCAA
ATTTGCAAGATTGGATTTCGATACAAGTACCATTACGTGGCAAAGAGTAC
TCGATACCAATGACAGATACCTTCGGAAAATTACTGTGGGACAATCACCA
ACTGAAAAAGGAAGAACTAGGGAGGTTAGTAACCTCTTGATAAACAATAT
ATAGGGAAAGTGAACACATGGTGTAAGAAACACTCACTAATTATTTTTTC
ATTTCCTTCGGAAATGACTTATATAGCAATATAATTCGCAGGTTTATTGA
CCTCTATGAAATAGAACTTATGCTCAAGTGTGTTACGGCATGTCTGAAGT
ATGTCAATTATAGCTGGAAAGAAGCGCCTTATGATGTAGATTAACGCAAT
AGCTGTATGAAAAATTTAATATTCAAATTTTTAGTTTAATGACGTAATGT
TACATAATGTTTATGACGTCATAATACAGGTTTTTGGGATATAACTTCTT
ATAGCCTTAAGTTAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTTGATCTACATCATAAGGCGCTTCTTTCC
AGCTATGTTTGACATTTTGAAAGTGAGTGGAACTGCTTCACTTTTACTTT
GGACATGCCGTAACTCACTTGAGTGATTTTACATTTTATAAAGTTTTTCC
TCCCATTCTTTAATCAAACGCTCTTTGAAGACTTGTAAGGATTGTGCTTC
AACAATGTCTTCTTCTAGATCATTCCAAGGGCTTACACTTCTGTAAAAAA
GAGAGTTGCTTTGGTAGCCTCTCATACCGTCATTAGCAAAGTTCCTTTGA
AGCTATTGATCATGCTGACGCCGTGGTCGTGTCCGAGGAGCAAATTTCTC
TGATCTTATAGAGTCGTCATAAATGTGGAGGTTCTTGAAGACTTCTACCA
TATCACCAACTTGCCGCCTGGTCTCTAGGCTGGGTAGTTTGATAAGTCAT
AACCGACCAAACTTGTTGTATACATGATGCTATTTTTGTCTTGGTGTAAA
AATGTACATTGTTTATATTATTTAATGTCAAAACTATTTGCTTTGGGTTG
AGATTATTATACAGAATCCAGTTTGGATATTACAATTAAGATTTGGCGAC
TTAAACTTGATCTTGATCTTCCGTGTATGATGAATTTCTTTTCTTTATAT
TATAGTGTCAGTTCGATATCACTGTAGCAAGTGAAATCATGGCTGTTCTC
GCCTTAACAACTGACCTTCGTGATATGAGAGATAGGTATGATGATATCTG
TAGAAATTTATTATAAATTCCATCCACCAGTAAATTGGTAAACTTTATTT
GTAAGTTTTTCAGAATTATAGAATATTTTTCCAATTGGGATTTTCAACTA
GAGCATATATTTTCTTATTCTTTGATCGAGCAGTTTTCTAATATTTTTCG
TTGACCAATTTTACCAGTGGGTAGGACTGTCAAACAGGGAACTTTCTCCG
TTTTACAGCAATAAAATAAGAAAATATAGTGTTTGGCATTTAAGACTTTG
GGCTGACAAATAAGCAAATTTTCAGTAGCAATTTTAAGATCTGTTTCTTG
CTCGTAGATTGGGAAACATGGTAGTTGCAAGCAACAAAGAAGGAATGCCA
ATTACTGCTGATGATCTGGTAAGAACATGAATTTTAATTGTCCATTCTTT
TTTCAATAGATATCACTGAATATATGTTAAAATCAACACCAAACTTGAAT
CAGTAGCGTAGACAAGAGGGGCGCAAAATTTGTGTAGGAGAGCATATTTT
ATAACACAGCAATTATTCATTCCTAATATAAAAATATAATTACAGTGTGG
CATAAAATTCTCATACACAAATTTTGCGTCCTATAAAATAACGTCTTATA
AAAGATGAGAAGTGTATTTCACATATTTCATACATTTTTCCTATTTCCTT
GGAAAAATAAGAATGTAAAATTCAGTAGACTCTCTCTAATTCGAATTTCA
ATCTTCTTAAATGAGAGAGAGATTCGAATTATGGAGAGCACTTAAATGCT
CAAATCTCTTATCAAGTTGAGTGAAAATAATAGCATTATGATTATACACT
ATGTGTATAAAGGCAAATAAACGAGGCTTTTGTTACCGTTAAGAATTTAG
TAATTAATTATCATCATTTATAGGGTGTGGGAGGAGCATTGACTGTCCTC
ATGAAAGATGCTATCAAACCAAATCTAATGCAAACTTTAGAGGTAAAAGA
GGCCAAAAAACTCTACGCGTCCTTGATTTCACATGCCCGACTGAAAGGTT
ATTTTTTCTATAAATTGTTTAAAGGGCTATGTTTGTTATAATATAATGTC
AGACAATATATTGATGAGTGCCGGCAATATATTGTAATGTGTGTCAGTTT
AATTTCTTGAGATCAAACTTTTCATAGTGGAAAATATGTTTGAAACGTTT
ACCTCTTTTACACGTTTTTTTATAATAATAAACTATATAAGAACATAAGG
CTTCGATGGCCAAAATGTTAAAAACAAGTTAAGAGCATTTTAAGGCTTTG
CGGACTCTAAAACGGCCAATTTCTTAAGAAAATGGTAAAAATAAGAACAT
ATTAAAAACATTTTTAGGCTTAAATCTCAAAAAGTTAAGAACATCCTAAG
GCATCAAAGTTTTTGGATGTTCTTATAAGAAAACGTGTATTACACCATAA
TTTCTTAACTCTCAAATATTACACCTTTTCATTAAATCTTCTCATCAGCA
GTGCAGAAAATCTTTTGGGACGAGATGGAGTTTTTACAAGCTCTTATTTG
ATTTGGTTGGTCGTTAACCAGTAATAAAACAATTTTGTTAGTGTTTCTAA
AGAACGCGTCATTTCTATTACTTCAAATGACCAATTATTAAAAAACTCTA
TGTTATGTAAATCTTTTTAGGCCCAGATACTTAGAGAAATGTTTGTGTCT
CTATTTATTAGGGATCACCAGTGTTTGTTCATGCAGGTCCTTTTGCAAAT
ATTGCTCATGGAAATTCATCCATCCTGGCAGACAAAATAGCATTGAAGCT
GGTTGGTCAAGATGGTTTTGTTGGTATGCGTGATAAATATATCCATCCCA
AACTTTTCCTCGTTATTTAGAATAATTAGCCGTTGACTCGATCAGTAGCT
ATAATGTGTTTTATTAAGGGCCATCATCAAATGTATCTGCCATTTGCTTA
TACAGCAGAACGAACTAGCTTCTCCTCTTTCGGCGCTGCACGAGCACGTA
TTTTATTATATCATAAAAATTCATTTAAAAAATATCTTTAATAATGCCAT
TCATTTTACTTTCAATCTTCTTTTGCAGTGACTGAATGTGGATTTGGAGC
TGACATTGGGATGGAGAAATTTTTCAACATCAAATGCAGATACAGCGGTT
TGTATTTAGAATGTCTTTCGAGTTTCATGCTTTATTGGGAGAAAGGATTT
TCTTTATTTCCAAGATACAAGCTGAGTTACTGCAAGTGTGGTTTTTATTA
CCTCCTTTTCATTTTTCTAGAGAAAACATAAGTTTCTTAAAAAGCTCAGT
TTTCCTAGAGTCTGTCAATACTGCTTTATGAACTTATAGTTGATACGAGA
CACGAAAAACGATGAAATATAACTATTTAAGAAAGCTTGATATATTCTTG
ATGTACTTTTTTTCTTTATCAGGACTTCTACCATCATGTGTGGTACTTGT
AGCGACAGTTCGTGCTCTCAAGATGCATGGCGGTGGTCCTAAAGTGAGAC
GAACTTTATTTTAGCCCTTAAAACAAGCGTTCGAAAAAACTTTTTCATCT
GAAAATTCGAAATAAAGTTTCTCCTTTGTGATTAAAGTAGAGATAGCGTT
AAATGTCTTAACTATGAACCCCTGAAAATTTGGAGGATTACCAAATATAC
TAATGATCTCAGTAACCAATACACTTTTCAACAAACATGATCCTCAAACC
AATTATTCTATAGGTTGTTGCTGGTTCACCGTTACCTGAAGCTTATACAA
CCGAGGTAAGTCCCAGTTATGAAAATATTCCAGACATAAAATTTTGTCTG
TGCCGTCAGTAAACATTTATTTCTTTTGTATAAAAAGAAAATTTGATGAA
AGGGGTTGTATTCCATGTTCTTCAATTTCTTTGCATTGAAGCATGAGAAT
AAGAGTGTTATTAAAATCTCTACCAATATTACTCCTTGCATTTGATTTCT
TATTATAAAGTCTTTAAAAAAATCAAAATCTCAGCTTCAAAATCAGTTCT
ACTGATCATGTTTTTTCTCTTTCGTATTTTTAGAACATCGAACTTGTGGA
GAAAGGCTTCTGTAACTTACGTAAACAAATCGAAAATGCGCTCTGCTTTG
GTGTACCTGTTGTAGTTGCAGTCAATAAATTCCAGTATGTTGGTCTAAAA
AATGGAATATATCTAGCATTGTTTCTCTTTTCATTGTTATCAAATGAAGT
TCTGTTTTTTATTGTGTCAGAGCTTGTAATCTACTAAACTTTGTTTAATA
GTCCTGCCAGTTGGTTCACTCGGTAGAGCATTGGCAATCCAAGGGTTGTG
GATTCGATCCCCTGTCAGCGCCAACTCAGCGAAGTAGTAGCTTAGATTGG
GTAGTCTATCTGGGGTATAAGTAACTTGGAGCTGATAGTGGCGCTCCACT
TCAGGATTCCATTTCCCAGTACAAGTGCAAATAGAAAAGGGAGTGGACTA
CTGGTAGGTTATCTAGACGACCATGCTATGTTTTATATACTAGGTATATA
AAGTGAAGGGAAGGAGAAGTAAAATAATAAATAAGGTTATTTTCGTTTGA
GTCTAACGAATTAGAAAATAACTTACCTTACTGAAGAGTAAGATTTATGT
AAATCTTCAATTTTTCTCTTTCTTGATTTCAGTACTGACACAGATGGTGA
GATTAACAAAATGATCAGCCTTTCCAAAGAAGCAGGAGCTTTTGATGCTG
TCCTTTGTACTCATTATGCTGAAGGAGGTTCGTCTTCGTTTTTTCGTTCA
GTAACAGTTTTTAAATGGTTATTAATTGAACCTATAGAACAAAATTATAA
CTCCAACACAAACAAGCATGTTTTTTTAATTTTCATCCTCATCTCACTCA
CTCTTCATTTTTTTTCTACATTTTTTTGTGAATTTTTGTTTCCTATTCCT
CCTTCGGCCATGTATCATTTTCGGGCGATGAATGACATGTATTTTTCCTC
TTCTTTTAATTAGTTTTTCATTTTCACGTTCTTTCCAAAACTTGAATTCT
GTTCACTTTGATTATAGGTCAAGGTGCTGTTAATTTGTCCCAAGCAGTTA
TTAAAGCGTCCGAAGAAAAAACGAATTTCCGATTTCTGTACGATTTGAAG
GTAACTCAATTAAAAATTCATTGATCTACAATAAATACCGACAACGGCTT
AGTCTATTTGAGTTCAATTGCGGAAATCTCAAACATTTATTTTGGTACAG
CCTATAGCGGTCATTTTTTCTGTATTGAAAGATGTATTTTCCATATAAAA
ACCTAACTTTTTTTTCATAAATTTAGCTTCCTTTGGAAGAGAAAATTGAA
ATCATTGCCAAGAGAATTTATGGTGCAGATGGCGTCTCATTCTCTGATCA
AGCAAAAGAAAGTTTGGCGCGCTATACTAAACAAGTAAGTCTTGAATTAC
TCGATCTTTTATAAATTCAAATATATAAGAATATGAATTTTGGCTCAATC
CCATATTCACGTTTATAAACGGCTAAGAAAATGCTCTCCTAAGCCAATTA
TTCAATAAAGTCAGCATATTAAGAACATTTTTAAAGAATGTAGCCTGAAT
ACCGCGTGAAAATTAAATCAGCCTAAATTTTAAGGTAAACAACATTGTGA
AATTGATTATTTTTTTCGAGCTTATGAATGCCGTTCTTAGAGGACGATGA
TTTCTTACAGCTCCAGATTAATACTGTAAACATTTTTTTTTGTTTTGCAG
GGTTTCAGTGAACTACCGATCTGTATGGCAAAGACGCATTTGTCATTGTC
TGATAACCCTGAACTGAAAGGCGCTCCCACAGGTAAGCTTGTCATGTCTT
CAGTCGATCGATTAAATGTTAATTAGTTAATTGGTTCACGTCTATTTATG
AAAATATTCAAACCAAAATAGGTTGGGAGTACTAATACTCTGATTGTAGG
GGGGGGGTTAGCAGGGAAGTTGGTACTCTGGAAGAAAATCTATAAAATGA
GGGGGGGGTCAATATAAAGTAATTTTTCCCAAAAACCCCAAGGAAAATGA
AGGTTTTGGTACTTTTTCAGGAAAATTTCATAAATGGGGTGGGGGGTTAG
TCATTATAAAACGGTATTGGGATGATTTTTTCCGAATAATTGCAAAGTGA
CCCCCCTACAATGAAGCACAGAAGAGTCCCACACTTATGGCGTCTTTTGC
CTCCGTGACCTTGTTTTCATGACGATCTAAAAATATTTTTTCCAGGCTTT
ACTCTCCCTATTCGTGACGTCAGAGCAAGTGTTGGTGCAGGCTTCGTCTT
TCCACTGGTGGGAACTGTAAGTCCCTTTTTTGCTTTTTCTCCGGAAAAAT
GCTACCCTGTTGACCCATCATGTCAATTCATATTTACCAATCATTGACTG
GTCATGGCCAAGAAAATTAGAAATGTTTTCGGATTATTCGCCTATTGCAT
TATGGTGTTACAACATAACTAAAGCAAGCTTAGAGGTTTTTGCGTTTTTA
TTTCATTGTTGCATTATTGTCACACAAAATATCTTTCTACTTATAGAAAT
GGTCTGACACAGTACTTTTTGATGATATAACCTAAACAATGGATCTAGAC
TATTTCGACTGATTTTTTTTTATTAGATGAGTACGATGCCAGGTTTACCA
ACACGTCCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGT
TCAAGGTCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCT
GAACATTTTTTTCAAGATTTTATTATTGTAGATTTTCATTTTTGTATCAC
TTTTTTTTTTAATACATAGAAATTTAGTAGTATTTTATATATCTTTCACC
TTAAATGATTTACACACTTTTTTCAAATAAAATTCATATTCTTGGATAAA
TCATTTTGAGTTCTTCATCGCCAAAACATTCGCAGATAGTTACGTTTTTC
TCAATGTCTTTTTCAGGTAATTTCTGAAAACTTTCAATTGTTCTTGCTCA
ATTTAAACATCAAGAAAATTTTCTTCGCTCAATAGTTATCGATTCTTTAA
TTTTTCCACTATCACAGCGTTTTCTTTTTAATTTCATTTCAATTTAGAAA
ATCTGGTAAAATTGATTGTAAATATTAAATTGTTTTCTAGAAATATTGAA
ACATCGAACCTTACATCTGTTTTATACGGTGGCCCAAAAGGGTCAACGAA
TCTTTTTCGTAGCCATCATGTCAATTCATATTTACCAATCATTGACTGGT
CATGGCCAAGAAAATTAGAAATGTTTTCGGATTATTCGCCTATTGCATTA
TGGTGTTACAACATAACTAAAGCAAGCTTAGAGGTTTTTGCGTTTTTATT
TCATTGTTGCATTATTGTCACACAAAATATCTTTCTACTTATAGAAATGG
TCTGACACAGTACTTTTTGATGATATAACCTAAACAATGGATCTAGACTA
TTTCGACTGATTTTTTTTTATTAGATGAGTACGATGCCAGGTTTACCAAC
ACGTCCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGTTC
AAGGTCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCTGA
ACATTTTTTTCAAGATTTTATTATTGTAGATTTTCATTTTTGTATCACTT
TTTTTTTTAATACATAGAAATTTAGTAGTATTTTATATATCTTTCACCTT
AAATGATTTACACACTTTTTTCAAATAAAATTCATATTCTTGGATAAATC
ATTTTGAGTTCTTCATCGCCAAAACATTCGCAGATAGTTACGTTTTTCTC
AATGTCTTTTTCAGGTAATTTCTGAAAACTTTCAATTGTTCTTGCTCAAT
TTAAACATCAAGAAAATTTTCTTCGCTCAATAGTTATCGATTCTTTAATT
TTTCCACTATCACAGCGTTTTCTTTTTAATTTCATTTCAATTTAGAAAAT
CTGGTAAAATTGATTGTAAATATTAAATTGTTTTCTAGAAATATTGAAAC
ATCGAACCTTACATCTGTTTTATACGGTGGCCCAAAAGGGTCAACGAATC
TTTTTCGTAGCCATCATGTCAATTCATATTTACCAATCATTGACTGGTCA
TGGCCAAGAAAATTAGAAATGTTTTCGGATTATTCGCCTATTGCATTATG
GTGTTACAACATAACTAAAGCAAGCTTAGAGGTTTTTGCGTTTTTATTTC
ATTGTTGCATTATTGTCACACAAAATATCTTTCTACTTATAGAAATGGTC
TGACACAGTACTTTTTGATGATATAACCTAAACAATGGATCTAGACTATT
TCGACTGATTTTTTTTTATTAGATGAGTACGATGCCAGGTTTACCAACAC
GTCCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGTTCAA
GGTCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCTGAAC
ATTTTTTTCAAGATTTTATTATTGTAGATTTTCATTTTTGTATCACTTTT
TTTTTTAATACATAGAAATTTAGTAGTATTTTATATATCTTTCACCTTAA
ATGATTTACACACTTTTTTCAAATAAAATTCATATTCTTGGATAAATCAT
TTTGAGTTCTTCATCGCCAAAACATTCGCAGATAGTTACGTTTTTCTCAA
TATCTTTTTCAGGTAATTTCTGAAAACTTTCAATTGTTCTTGCTCAATTT
AAACATCAAGAAAATTTTCTTCGCTCAATAATTATCGATTCTTTAATTTT
TCCACTATCACAGCGTTTTCTTTTTAATTTAATTTCAATTTAGAAAATCT
GGTAAAATTGATTGTAAATATTAAATTGTTTTCTAGAAATATTGAAACAT
CGAACCTTACATCTGTTTTATACGGTGGCCCAAAAGGGTCAACGAATCTT
TTTCGTAGCCATCATGTCAATTCATATTTACCAATCATTGACTGGTCATG
GCCAAGAAAATTAGAAATGTTTTCGGATTATTCGCCTATTGCATTATGGT
GTTACAACATAACTAAAGCAAGCTTAGAGGTTTTTGCGTTTTTATTTCAT
TGTTGCATTATTGTCACACAAAATATCTTTCTACTTATAGAAATGGTCTG
ACACAGTACTTTTTGATGATATAACCTAAACAATGGATCTAGACTATTTC
GACTGATTTTTTTTTATTAGATGAGTACGATGCCAGGTTTACCAACACGT
CCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGTTCAAGG
TCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCTGAACAT
TTTTTTCAAGATTTTATTATTGTAGATTTTCATTTTTGTATCACTTTTTT
TTTTAATACATAGAAATTTAGTAGTATTTTATATATCTTTCACCTTAAAT
GATTTACACACTTTTTTCAAATAAAATTCATATTCTTGGATAAATCATTT
TGAGTTCTTCATCGCCAAAACATTCGCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037271	XLOC_037271	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_319	supercontig	scaffold_319:12434..27562 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.8003	17.1707	7.81994	9.03903	4.63736	6.14971	18.6115	14.1401	9.83092	13.3522	9.54147	11.4886	13.0763	18.6912	10.2107	12.8958	7.62672	16.337	11.3797	8.38414	18.2181	9.35333	12.9157	19.1487	9.0725	8.81842	8.20025	13.5638	23.0172	17.8814

Blast

[Close]

BLAST of TCONS_00059176 vs. Swiss-Prot (Human)
Match: C1TC (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 927.161 bits (2395), Expect = 0.000e+0
Identity = 477/633 (75.36%), Postives = 541/633 (85.47%), Query Frame = 1

Query:  181 WDIEYLPLILENPVPSDISISRSQKPKYIGKLAEELKIQPEEVDYYGKTKAKVGLSILERLKDQKDGKYVVVAGITPTPLGEGKSTTTIGLAQSLSSALKKQCFACVRQPSQGPTFGIKXXXXXXXYSQVIPMEEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHESTQSDKALFNRLCPKKKGIREFTPIMLRRLKKLGIEKSNPDDLTDEEKGKFARLDFDTSTITWQRVLDTNDRYLRKITVGQSPTEKGRTRECQFDITVASEIMAVLALTTDLRDMRDRLGNMVVASNKEGMPITADDLGVGGALTVLMKDAIKPNLMQTLEGSPVFVHAGPFANIAHGNSSILADKIALKLVGQDGFVVTECGFGADIGMEKFFNIKCRYSGLLPSCVVLVATVRALKMHGGGPKVVAGSPLPEAYTTENIELVEKGFCNLRKQIENALCFGVPVVVAVNKFHTDTDGEINKMISLSKEAGAFDAVLCTHYAEGGQGAVNLSQAVIKASEEKTNFRFLYDLKLPLEEKIEIIAKRIYGADGVSFSDQAKESLARYTKQGFSELPICMAKTHLSLSDNPELKGAPTGFTLPIRDVRASVGAGFVFPLVGTMSTMPGLPTRPCFYDIDLDPDTEEVQGLM 2079
            W I+Y  L L+ PVPSDI ISRS KPK IGKLA E+ +  EEV+ YG+TKAKV LS LERLK + DGKYVVV GITPTPLGEGKSTTTIGL Q+L + L +  FACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNL+AAAIDARIFHE TQ+DKALFNRL P   G+R F+ I +RRLK+LGIEK++P  LTDEE  +FARLD D  TITWQRVLDTNDR+LRKIT+GQ+PTEKG TR  QFDI+VASEIMAVLALTT L DMR+RLG MVVAS+K+G P++A+DLGV GALTVLMKDAIKPNLMQTLEG+PVFVHAGPFANIAHGNSSI+AD+IALKLVG +GFVVTE GFGADIGMEKFFNIKCRYSGL P  VVLVATVRALKMHGGGP V AG PLP+AY  EN+ELVEKGF NL+KQIENA  FG+PVVVAVN F TDT+ E++ +  LS+E GAFDAV CTH+AEGG+GA+ L+QAV +A++  ++F+ LYDLKLP+E+KI IIA++IYGAD +    +A+     YTKQGF  LPICMAKTHLSLS NPE KG PTGF LPIRD+RASVGAGF++PLVGTMSTMPGLPTRPCFYDIDLDP+TE+V GL 
Sbjct:  303 WMIQYNNLNLKTPVPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALERLKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLYQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLVPSVNGVRRFSDIQIRRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKGHTRTAQFDISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGALTVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKTDTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQAVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNLPICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVNGLF 935

The following BLAST results are available for this feature:

BLAST of TCONS_00059176 vs. Swiss-Prot (Human)

BLAST of TCONS_00059176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C1TC	0.000e+0	75.36	C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo...	[more]

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TCONS_00059176 (transcript) - C. hemisphaerica