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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059275 ID=TCONS_00059275|Name=TCONS_00059275|organism=Clytia hemisphaerica|type=transcript|length=1213bp
ATGTTGTATTTGTTGTAGACAGAGGAGTGGTTGTCGTAGTTGTGGTAGGC
GGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGTAGTAGGCGGCGGAGTGGT
TGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTGTTGTAGTTGTAGTAGGCG
GTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTAGTAGGCGGAGGGGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGcgtggttgttgtagttgtagtAGGCGG
AGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTG
TAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTT
GTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGG
AGGCGTGGTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGTTGTAGTAGTAG
TTGTAGTAGGCAGAGGggtggttgttgtagttgtgGTAGGCGGAGGcgtg
gttgttgtagttgtagtAGGCGGAGGcgtggttgttgtagttgtgGTAAG
CGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGTGGTTGTCGTAG
TTGTTGTAGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAGGCGGAGGcgtg
gttgttgtagttgtgGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGG
CTTAAGCGTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTAC
GCTGAAACTTGGTTGTTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTG
GTTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGG
TGGAAATGTGGTAGGTGGAAATGTTGCTGCTGTTATtgtcttttttgtac
tttgaagCTCTTGCATATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTT
CGTGTCTCATTCTGTAAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAA
CTTGCAAAGGACAGAAAAAGTTGCAGATTGTTTGTATGAAATCAATtcct
ttgtaaaatatttacatTAAACACAATGGCCACATTTTGGTTTGCCTGCC
CCCTTTGTTTATCTAAAAATGCCgttcaaaatatctcaaaaacttATTCT
TTGGGGTTAGAATACCTTAACtaactgacctttatataccctggaccaag
tttctcaatcccg Run BLAST on NCBI transcript from alignment at scaffold_323:7496..8801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059275 ID=TCONS_00059275|Name=TCONS_00059275|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at scaffold_323:7496..8801+ (Clytia hemisphaerica)
ATGTTGTATTTGTTGTAGACAGAGGAGTGGTTGTCGTAGTTGTGGTAGGC
GGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGTAGTAGGCGGCGGAGTGGT
TGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTGTTGTAGTTGTAGTAGGCG
GTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTAGGCGGAGGGGTGGTTGTC
GTAGTTGTGGTAAGCGGAGGCGTGGTTGTTGTAgttgtagtAGGCGGAGA
ggtggttgttgtagttgttgttgTAGTAGGCGGAGGGGTGGTTGTCGTAG
TTGTGGTAGGCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGTG
GTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGG
CGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAG
TTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTG
GTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGTTGTAGTAGTAGTTGTAGT
AGGCAGAGGggtggttgttgtagttgtgGTAGGCGGAGGcgtggttgttg
tagttgtagtAGGCGGAGGcgtggttgttgtagttgtgGTAAGCGGAGGc
gtggttgttgtagttgtagtAGGCGGAGGCGTGGTTGTCGTAGTTGTTGT
AGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAGGCGGAGGcgtggttgttg
tagttgtgGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGGCTTAAGC
GTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTACGCTGAAA
CTTGGTTGTTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTGGTTGTGG
TAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAAT
GTGGTAGGTGGAAATGTTGCTGCTGTTATtgtcttttttgtactttgaag
CTCTTGCATATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTTCGTGTCT
CATTCTGTAAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAACTTGCAA
AGGACAGAAAAAGTTGCAGATTGTTTGTATGAAATCAATtcctttgtaaa
atatttacatTAAACACAATGGCCACATTTTGGTTTGCCTGCCCCCTTTG
TTTATCTAAAAATGCCgttcaaaatatctcaaaaacttATTCTTTGGGGT
TAGAATACCTTAACtaactgacctttatataccctggaccaagtttctca
atcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059275-exon-scaffold_323-1491911889:7496..7678 | TCONS_00059275-exon-scaffold_323-1491911889:7496..7678 | Clytia hemisphaerica | exon |
| TCONS_00059275-exon-scaffold_323-1510915933:7496..7678 | TCONS_00059275-exon-scaffold_323-1510915933:7496..7678 | Clytia hemisphaerica | exon |
| TCONS_00059275-exon-scaffold_323-1575043694:7496..7678 | TCONS_00059275-exon-scaffold_323-1575043694:7496..7678 | Clytia hemisphaerica | exon |
| TCONS_00059275-exon-scaffold_323-1491911889:7772..8801 | TCONS_00059275-exon-scaffold_323-1491911889:7772..8801 | Clytia hemisphaerica | exon |
| TCONS_00059275-exon-scaffold_323-1510915933:7772..8801 | TCONS_00059275-exon-scaffold_323-1510915933:7772..8801 | Clytia hemisphaerica | exon |
| TCONS_00059275-exon-scaffold_323-1575043694:7772..8801 | TCONS_00059275-exon-scaffold_323-1575043694:7772..8801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_323 | supercontig | scaffold_323:7496..8801 + |
Blast
The following BLAST results are available for this feature:
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