TCONS_00059029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059029
Unique NameTCONS_00059029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059029 ID=TCONS_00059029|Name=TCONS_00059029|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ATGTGTAGTTAAATATCAACAGtattttcatttgataaaactttttatca
ttcaaaacaaaactatTTCTACCAGCcctaaataaacataaaaccATAAA
GGTATAGAAATATAAAAAGCTTTATTAGTGACAAAACTGACAAAAAGTCA
TTCACCCCTCTCCACCCATAACGatataaattcaaaatatttttttaaat
aaataccagctataatcaaatcaaaaaggtTACACAAGGACATTTGTTAT
GGGTTCTATTATCAAATTAGATGTggtgaaaaatcacaaaatcattatat
ttcaaaaccgcactgatgagtcctgggagggacgaaacacgtgtctgcgg
atagatgtttcaaaaattaaaagcaAGGTTttaatgtaaaatacaaaatc
aCTTCCTCTATATTATAATCTAAAacacaaaatattcaaaataaataatt
agtGTAAGTAAAAATTAAAACTATTGACACTCAATCCAACAcccaaaaaa
agaacaaaaccaTTATTTCAATCATCATTTTTGGACTCCTTTCCATCACA
AGCCACAATTTTGACTTTATCAACTTTAACACTATCACCAACTTCACGGA
AGGTTACATTGTTCAAAACAAAGGTCCATACATTGTCACAAAATCTATAA
GTGTTCAATTTCCCTTTGAAGTTGATTCTATTTTTGACTTTATTGGATAA
TGCATTGTTGATAGCCTTGTCAAATTGCAAAAGAACTTGAAGGGCAAGTT
GAGGTGTGATTTGTTGGGATTGAATCAACTCATCCAAACTCTCTTGTAAA
CTATTCCCCAGTGTAGTATTTCTATACAACTGATAACTCATTATTATTAT
ATAATAATTATAGCTCTGAAACAAAAACATATTATCAATAGTTACctaaa
ttcaaaaagaaattttagagCAGAAACACAACCTCAAAGCATCCATTCTA
GACTGTAAGTAAAAGtgaagtgaaagtgaaagaaaaGGCTGCAATGgttt
tttcctttttacaaTTTGCATAATATTAGAACTGGAAAGAAATGCCAGTT
GATCCAAGATTTTCTTAAAACCACCACATCAAGTGTTTACTATCCTAAAG
AAGATAGATCCTTCTTATCAAAGAAAtctcaaagtggaagaaaaatAAGG
AAGcgaaatgaaaacattttaagatttttaagttcttcttttattcaatg
attttttagggcactttgttgacaatctaactctcgcattgAATTTCTGC
TTTCTTCAGtgaattgaagatgagaaaaagtctACATCTTAGGATTaccg
attgaaacaaataaaaaaggtgaagattttacagccgcctgtcgtgcaag
gcactgagaggcacATGTGCCAAGAAGAAGGGCCGTGTGAAATACGACca
tctcattggtggaaatttaatAAACAGTCTGCAAAGGAGCGCTGTGTAGC
AATCAGTAAaagagaccacttttgtttttgttgcataTTTCGATATACAG
TGTAGGTGGAACTTCCATATTCCTTGGTTAAAAAAAgctatatgtttttt
ttataagcattgcacttgtaacacttgtaagcatatctcggctcagatat
ggggaaaaataaGCTATAAGGGTACCATTTCTCATTCCACAAAAGNaggc
tcagatatggggaaaaattaagcatatggcaagcattacttgagcctacg
aaaaatgtttttttcctggttttggctttttttggctggaattttacgga
ttttcagtatttccctaaatttttgctttggatATAAGCATCTCTCAAGC
ATTTTATCAGCCTTactaagctttcgacctaagcaactctgagcctgttt
tcggatttttgtatgcttataaaacatataccgggtgacccacgaaaaag
tataagagttaggagggtaactgtgtccgaaaaaaattgaattttaacaa
aatggggg
Run BLAST on NCBI

protein sequence of TCONS_00059029-protein

>TCONS_00059029-protein ID=TCONS_00059029-protein|Name=TCONS_00059029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MFLFQSYNYYIIIMSYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVL
LQFDKAINNALSNKVKNRINFKGKLNTYRFCDNVWTFVLNNVTFREVGDS
VKVDKVKIVACDGKESKNDD
Run BLAST on NCBI

transcript from alignment at scaffold_315:368344..370301

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059029 ID=TCONS_00059029|Name=TCONS_00059029|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at scaffold_315:368344..370301 (Clytia hemisphaerica)
cccccattttgttaaaattcaatttttttcggacacagttaccctcctaa
ctcttatactttttcgtgggtcacccggtatatgttttataagcatacaa
aaatccgaaaacaggctcagagttgcttaggtcgaaagcttagtAAGGCT
GATAAAATGCTTGAGAGATGCTTATatccaaagcaaaaatttagggaaat
actgaaaatccgtaaaattccagccaaaaaaagccaaaaccaggaaaaaa
acatttttcgtaggctcaagtaatgcttgccatatgcttaatttttcccc
atatctgagcctNCTTTTGTGGAATGAGAAATGGTACCCTTATAGCttat
ttttccccatatctgagccgagatatgcttacaagtgttacaagtgcaat
gcttataaaaaaaacatatagcTTTTTTTAACCAAGGAATATGGAAGTTC
CACCTACACTGTATATCGAAAtatgcaacaaaaacaaaagtggtctcttT
TACTGATTGCTACACAGCGCTCCTTTGCAGACTGTTTattaaatttccac
caatgagatgGTCGTATTTCACACGGCCCTTCTTCTTGGCACATgtgcct
ctcagtgccttgcacgacaggcggctgtaaaatcttcaccttttttattt
gtttcaatcggtAATCCTAAGATGTagactttttctcatcttcaattcaC
TGAAGAAAGCAGAAATTcaatgcgagagttagattgtcaacaaagtgccc
taaaaaatcattgaataaaagaagaacttaaaaatcttaaaatgttttca
tttcgCTTCCTTatttttcttccactttgagaTTTCTTTGATAAGAAGGA
TCTATCTTCTTTAGGATAGTAAACACTTGATGTGGTGGTTTTAAGAAAAT
CTTGGATCAACTGGCATTTCTTTCCAGTTCTAATATTATGCAAAttgtaa
aaaggaaaaaacCATTGCAGCCttttctttcactttcacttcaCTTTTAC
TTACAGTCTAGAATGGATGCTTTGAGGTTGTGTTTCTGctctaaaatttc
tttttgaatttagGTAACTATTGATAATATGTTTTTGTTTCAGAGCTATA
ATTATTATATAATAATAATGAGTTATCAGTTGTATAGAAATACTACACTG
GGGAATAGTTTACAAGAGAGTTTGGATGAGTTGATTCAATCCCAACAAAT
CACACCTCAACTTGCCCTTCAAGTTCTTTTGCAATTTGACAAGGCTATCA
ACAATGCATTATCCAATAAAGTCAAAAATAGAATCAACTTCAAAGGGAAA
TTGAACACTTATAGATTTTGTGACAATGTATGGACCTTTGTTTTGAACAA
TGTAACCTTCCGTGAAGTTGGTGATAGTGTTAAAGTTGATAAAGTCAAAA
TTGTGGCTTGTGATGGAAAGGAGTCCAAAAATGATGATTGAAATAAtggt
tttgttctttttttgggTGTTGGATTGAGTGTCAATAGTTTTAATTTTTA
CTTACactaattatttattttgaatattttgtgtTTTAGATTATAATATA
GAGGAAGtgattttgtattttacattaaAACCTtgcttttaatttttgaa
acatctatccgcagacacgtgtttcgtccctcccaggactcatcagtgcg
gttttgaaatataatgattttgtgatttttcaccACATCTAATTTGATAA
TAGAACCCATAACAAATGTCCTTGTGTAacctttttgatttgattatagc
tggtatttatttaaaaaaatattttgaatttatatCGTTATGGGTGGAGA
GGGGTGAATGACTTTTTGTCAGTTTTGTCACTAATAAAGCTTTTTATATT
TCTATACCTTTATggttttatgtttatttaggGCTGGTAGAAatagtttt
gttttgaatgataaaaagttttatcaaatgaaaataCTGTTGATATTTAA
CTACACAT

Coding sequence (CDS) from alignment at scaffold_315:368344..370301

>TCONS_00059029 ID=TCONS_00059029|Name=TCONS_00059029|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_315:368344..370301 (Clytia hemisphaerica)
ATGTTTTTGTTTCAGAGCTATAATTATTATATAATAATAATGAGTTATCA
GTTGTATAGAAATACTACACTGGGGAATAGTTTACAAGAGAGTTTGGATG
AGTTGATTCAATCCCAACAAATCACACCTCAACTTGCCCTTCAAGTTCTT
TTGCAATTTGACAAGGCTATCAACAATGCATTATCCAATAAAGTCAAAAA
TAGAATCAACTTCAAAGGGAAATTGAACACTTATAGATTTTGTGACAATG
TATGGACCTTTGTTTTGAACAATGTAACCTTCCGTGAAGTTGGTGATAGT
GTTAAAGTTGATAAAGTCAAAATTGTGGCTTGTGATGGAAAGGAGTCCAA
AAATGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037180XLOC_037180Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059029-proteinTCONS_00059029-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059029-exon-scaffold_315-1491911889:368344..370301TCONS_00059029-exon-scaffold_315-1491911889:368344..370301Clytia hemisphaericaexon
TCONS_00059029-exon-scaffold_315-1510915933:368344..370301TCONS_00059029-exon-scaffold_315-1510915933:368344..370301Clytia hemisphaericaexon
TCONS_00059029-exon-scaffold_315-1575043694:368344..370301TCONS_00059029-exon-scaffold_315-1575043694:368344..370301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:368344..370301 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4864	11.6442	58.0235	67.7723	34.7017	26.5785	32.5644	36.8401	28.7573	26.0919	21.0766	20.861	8.52173	6.75313	8.68324	9.53064	10.0126	11.185	5.58024	7.12615	15.8289	14.8675	17.7505	18.1615	6.60317	9.90419	25.4785	18.3926	15.5057	14.8172
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR015872TFIIA_gsu_N
IPR015871TFIIA_gsu_C
IPR009088TFIIA_b-brl
IPR009083TFIIA_a-hlx
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
Blast
[Close]
BLAST of TCONS_00059029 vs. Swiss-Prot (Human)
Match: T2AG (Transcription initiation factor IIA subunit 2 OS=Homo sapiens GN=GTF2A2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.637e-54
Identity = 86/103 (83.50%), Postives = 96/103 (93.20%), Query Frame = -2 
Query:  533 MSYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINNALSNKVKNRINFKGKLNTYRFCDNVWTFVLNNVTFREVGDSVKVDKVKIVACDGKES 841
            M+YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAIN AL+ +V+NR+NF+G LNTYRFCDNVWTFVLN+V FREV + +KVDKVKIVACDGK +
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT 103
The following BLAST results are available for this feature:
BLAST of TCONS_00059029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2AG1.637e-5483.50Transcription initiation factor IIA subunit 2 OS=H... [more]
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