TCONS_00058844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058844
Unique NameTCONS_00058844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058844 ID=TCONS_00058844|Name=TCONS_00058844|organism=Clytia hemisphaerica|type=transcript|length=868bp
CTGGAAAGAGctgaaaaatagccattttttgccacaAATGGAGACATTAG
ACTGGTTTCTCCGCCAAAAatgcaatttaaaaaaatttgtggTGGATTTA
GTTTCTTGATTCAGTAATCTCACGCGTTTTcacgagttttaatttcgcga
aaatggcaaaaattcaggaaatcgcaaaatttaatctcgtgaaagttaat
cccattaaagtagtctTCACAATTAAGCCAAGTTTAGAGTTTGATCATCT
TCATCTACTTactttctgtttattttttttttcagtatcAATGTAAAGTT
TTACTCAAAAGAAGATGAAGACTTTCGGAGGATCAGAGTCAGTGATGACA
TATTACCGACAGATAATTCTTCAATGGAGTTGTTGAAATATCTTAAATTA
TCTTCAAGGTTATTACAATTGCCTTTCGTCTCAAAGAAATGCCATGGAAA
GGAATCGAATGAATCTCAAATAGCTCTCAACCATGACAATGTTTCTTTCT
TTGCAATGTTTGACATCACAATCAATTGCCCGAATCAAGCTGGCTTGTAC
AACTTATATTTCCACAACTGCATGAATTACGATGTTGCAGAAGCAATCAA
GATAGATTTGAATttgAAAATCACAGAGAGAAATCAGGGCACTTATTTAT
CTGCTGGCCAGATTCCATTGCCAACGTTATACTTCTGGTTGagttttgca
tttttcattgCTGCAGTTTGTTGGACTGTCTACCTTAGAAAGAGAAGGTA
TTATTACTGTTAATCTTTTTACCAAATCCTCATTTCTCATTTAGTTTAAT
TGACGAAACACTTTCTAAACAATTCATATGATGATATGAGCAATTCATAT
GATTTGGCCTACTATGAC
Run BLAST on NCBI

protein sequence of TCONS_00058844-protein

>TCONS_00058844-protein ID=TCONS_00058844-protein|Name=TCONS_00058844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MELLKYLKLSSRLLQLPFVSKKCHGKESNESQIALNHDNVSFFAMFDITI
NCPNQAGLYNLYFHNCMNYDVAEAIKIDLNLKITERNQGTYLSAGQIPLP
TLYFWLSFAFFIAAVCWTVYLRKRRYYYC
Run BLAST on NCBI

transcript from alignment at scaffold_314:486508..488090+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058844 ID=TCONS_00058844|Name=TCONS_00058844|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_314:486508..488090+ (Clytia hemisphaerica)
CTGGAAAGAGctgaaaaatagccattttttgccacaAATGGAGACATTAG
ACTGGTTTCTCCGCCAAAAatgcaatttaaaaaaatttgtggTGGATTTA
GTTTCTTGATTCAGTAATCTCACGCGTTTTcacgagttttaatttcgcga
aaatggcaaaaattcaggaaatcgcaaaatttaatctcgtgaaagttaat
cccattaaagtagtctTCACAATTAAGCCAAGTTTAGAGTTTGATCATCT
TCATCTACTTactttctgtttattttttttttcagtatcAATGTAAAGTT
TTACTCAAAAGAAGATGAAGACTTTCGGAGGATCAGAGTCAGTGATGACA
TATTACCGACAGATAATTCTTCAATGGAGTTGTTGAAATATCTTAAATTA
TCTTCAAGGTTATTACAATTGCCTTTCGTCTCAAAGAAATGCCATGGAAA
GGAATCGAATGAATCTCAAATAGCTCTCAACCATGACAATGTTTCTTTCT
TTGCAATGGTAAGGAAACAGAATTTGCCTTTCAAGCTTCAATCTGCTTTG
AATTTAGGAGAAAGATGAATGCGAGAATTTCTTCCACTTCGAAAACTAAA
CCCATATTTTAAACTGAGAATATCTTCATTTCCTTCGCACTATAATTaca
ttgtaaagtttttttccAATGCGTAGAATTACTTTTTTTGCCTTATAGTT
TGACATCACAATCAATTGCCCGAATCAAGCTGGCTTGTACAACTTATATT
TCCACAACTGCATGAATTACGATGTTGCAGAAGCAATCAAGATAGATTTG
AATGTAGGTTTATGGTTAAATAGTTTGTGAAAAATCAACTTTCTGACACA
CCAAATGATAGATTTAATACACTAATCAAAAAATCTACATTTAGAACGCA
ATGGATATCTCGTAATAGATAATATATTCTATTCTATTCTGCTCTAATTC
TACTATAAAGAGATAAAGAGATATGGCGAATTAATGTGATTATCTGACCT
GGTTGCTAAGACAAAACAATCAAATTGCACTGTGATTTGCTTCATTACGA
AAGCAGATGCGACCGAAGTCAATTCTGTATTTTAAAGAACTtgtattttc
tatattttcaaataatgtaaggtaaattttctttttagttgAAAATCACA
GAGAGAAATCAGGGCACTTATTTATCTGCTGGCCAGGTAAAATTGGTATT
TCATATACAatttataatatatattttttatttcattcatttgtttgttt
tattaaaTTTAGTAATCAAGTCTTGAAATTTCAGCAGTGTGAATATACCC
ATTAGTGTTATTTAGGATAGTTAAAGTTTGTTTACGATATTAGTTATTCT
TTCAATATGAATTGTTATGTTTTTAGATTCCATTGCCAACGTTATACTTC
TGGTTGagttttgcatttttcattgCTGCAGTTTGTTGGACTGTCTACCT
TAGAAAGAGAAGGTATTATTACTGTTAATCTTTTTACCAAATCCTCATTT
CTCATTTAGTTTAATTGACGAAACACTTTCTAAACAATTCATATGATGAT
ATGAGCAATTCATATGATTTGGCCTACTATGAC

Coding sequence (CDS) from alignment at scaffold_314:486508..488090+

>TCONS_00058844 ID=TCONS_00058844|Name=TCONS_00058844|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_314:486508..488090+ (Clytia hemisphaerica)
ATGGAGTTGTTGAAATATCTTAAATTATCTTCAAGGTTATTACAATTGCC
TTTCGTCTCAAAGAAATGCCATGGAAAGGAATCGAATGAATCTCAAATAG
CTCTCAACCATGACAATGTTTCTTTCTTTGCAATGTTTGACATCACAATC
AATTGCCCGAATCAAGCTGGCTTGTACAACTTATATTTCCACAACTGCAT
GAATTACGATGTTGCAGAAGCAATCAAGATAGATTTGAATttgAAAATCA
CAGAGAGAAATCAGGGCACTTATTTATCTGCTGGCCAGATTCCATTGCCA
ACGTTATACTTCTGGTTGagttttgcatttttcattgCTGCAGTTTGTTG
GACTGTCTACCTTAGAAAGAGAAGGTATTATTACTGTTAAATGGAGTTGT
TGAAATATCTTAAATTATCTTCAAGGTTATTACAATTGCCTTTCGTCTCA
AAGAAATGCCATGGAAAGGAATCGAATGAATCTCAAATAGCTCTCAACCA
TGACAATGTTTCTTTCTTTGCAATGTTTGACATCACAATCAATTGCCCGA
ATCAAGCTGGCTTGTACAACTTATATTTCCACAACTGCATGAATTACGAT
GTTGCAGAAGCAATCAAGATAGATTTGAATttgAAAATCACAGAGAGAAA
TCAGGGCACTTATTTATCTGCTGGCCAGATTCCATTGCCAACGTTATACT
TCTGGTTGagttttgcatttttcattgCTGCAGTTTGTTGGACTGTCTAC
CTTAGAAAGAGAAGGTATTATTACTGTTAAATGGAGTTGTTGAAATATCT
TAAATTATCTTCAAGGTTATTACAATTGCCTTTCGTCTCAAAGAAATGCC
ATGGAAAGGAATCGAATGAATCTCAAATAGCTCTCAACCATGACAATGTT
TCTTTCTTTGCAATGTTTGACATCACAATCAATTGCCCGAATCAAGCTGG
CTTGTACAACTTATATTTCCACAACTGCATGAATTACGATGTTGCAGAAG
CAATCAAGATAGATTTGAATttgAAAATCACAGAGAGAAATCAGGGCACT
TATTTATCTGCTGGCCAGATTCCATTGCCAACGTTATACTTCTGGTTGag
ttttgcatttttcattgCTGCAGTTTGTTGGACTGTCTACCTTAGAAAGA
GAAGGTATTATTACTGTTAAATGGAGTTGTTGAAATATCTTAAATTATCT
TCAAGGTTATTACAATTGCCTTTCGTCTCAAAGAAATGCCATGGAAAGGA
ATCGAATGAATCTCAAATAGCTCTCAACCATGACAATGTTTCTTTCTTTG
CAATGTTTGACATCACAATCAATTGCCCGAATCAAGCTGGCTTGTACAAC
TTATATTTCCACAACTGCATGAATTACGATGTTGCAGAAGCAATCAAGAT
AGATTTGAATttgAAAATCACAGAGAGAAATCAGGGCACTTATTTATCTG
CTGGCCAGATTCCATTGCCAACGTTATACTTCTGGTTGagttttgcattt
ttcattgCTGCAGTTTGTTGGACTGTCTACCTTAGAAAGAGAAGGTATTA
TTACTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037071XLOC_037071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058844-exon-scaffold_314-1491911889:486508..487015TCONS_00058844-exon-scaffold_314-1491911889:486508..487015Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1510915933:486508..487015TCONS_00058844-exon-scaffold_314-1510915933:486508..487015Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1575043694:486508..487015TCONS_00058844-exon-scaffold_314-1575043694:486508..487015Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1491911889:487206..487310TCONS_00058844-exon-scaffold_314-1491911889:487206..487310Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1510915933:487206..487310TCONS_00058844-exon-scaffold_314-1510915933:487206..487310Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1575043694:487206..487310TCONS_00058844-exon-scaffold_314-1575043694:487206..487310Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1491911889:487646..487693TCONS_00058844-exon-scaffold_314-1491911889:487646..487693Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1510915933:487646..487693TCONS_00058844-exon-scaffold_314-1510915933:487646..487693Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1575043694:487646..487693TCONS_00058844-exon-scaffold_314-1575043694:487646..487693Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1491911889:487884..488090TCONS_00058844-exon-scaffold_314-1491911889:487884..488090Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1510915933:487884..488090TCONS_00058844-exon-scaffold_314-1510915933:487884..488090Clytia hemisphaericaexon
TCONS_00058844-exon-scaffold_314-1575043694:487884..488090TCONS_00058844-exon-scaffold_314-1575043694:487884..488090Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058844-proteinTCONS_00058844-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:486508..488090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.3001	35.4364	34.9275	29.4003	23.087	20.1942	25.4686	25.0119	24.271	23.5451	30.1622	22.5524	19.5492	15.3939	15.132	18.0761	18.631	27.298	13.277	21.8582	29.6173	30.0858	39.5053	42.5942	22.6002	29.9199	25.9106	17.9623	35.374	30.8658
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009637GPR107-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00058844 vs. Swiss-Prot (Human)
Match: GP107 (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.648e-17
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 2 
Query:  479 NHDNVSFFAMFDITINCPNQAGLYNLYFHNCMNYDV-AEAIKIDLNLKITERNQGTYLSAGQIPLPTLYFWLSFAFFIAAVCWTVYLRKRR 748
            N   VSF   F+I+ +  +Q GLY+LYFH C+  ++ ++     L+++ITE+N  +YLSAG+IPLP LY  ++F FF++   W   LRKRR
Sbjct:  200 NGGAVSFQFFFNISTD--DQEGLYSLYFHKCLGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRR 288
The following BLAST results are available for this feature:
BLAST of TCONS_00058844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1071.648e-1743.96Protein GPR107 OS=Homo sapiens GN=GPR107 PE=1 SV=1[more]
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