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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058677 ID=TCONS_00058677|Name=TCONS_00058677|organism=Clytia hemisphaerica|type=transcript|length=1189bp
ggaaaatatgTGTGGTCTTTTCCGTTCATACCTCTCTTAATCAACAAACA
CTGTACGGTGCCAACACGGGGATAGTATATTAACCTCGATCTAGTGTCGA
TTTACTAAACTAAGCACGAAGTCGGCTTTGCTACTCCAAGTTCTCCACCA
ACTGAGCTATCAAATCATGCTGGGAAACCATTCGAAGGCAGCGTTGGGTT
TTGGACTCGATCATTCTAGCAATCAATCCACAACAATGTTATTGAACATT
TCAACCAATAATACTTTCaattcatcatttttcaatGAGAGCCAATTTTG
TCAGCAAGAGAGATCGGGATTGTTCATTGGGGACAAAGCATTGCACATTT
TTATCGCCTTGTATGGTTTCTTTGGATGTTTCGGACTACCTGCTAATGCT
TTTGTCATTTTCATTATTAAGACAACGCGACAATCGCAGAACCAATCTAT
GGAGCTGTTGATGTATTTGTCTTGTGTTGACTTGTATAGCAGCGTCATAG
CTTTGATTCGAATCCCAATTTTCATTCATGCGGAACAATTGAGTTGTACG
GGATTGCGTTGGAGCTACTTTTTCACGCTTATTTCTTTTTACGCCACAAA
TTATCTTTTCGCTTTGACCGGCCTCGACCGCTTCTTACGACTCAAATACT
TGGATGAGTATGACGCCAAATTCACTCCGCTTCGCTTCCGCATCACGCTC
TACTGGTATTTTGCTTTGATCATCATTTTACCAACCGTCACAACGTACCT
GAATACCCAATACTACATTGGATACGCAAGCAGATACGTTTTACCCTTTA
ATATTATACTTGTAATAACAACTGTTATCTTTTACGCGCTCTCTATTTTC
TTATTACGCCGTTTACGAAAATTCGATAACGAAGTCATCTCTGATGCCAC
TCAAAATATCTTAAATGTCACAAAGATTTATTTTTACCTTTTCATCGGTT
TTACTGGAGGAACTCTATGTTATCTTATCATCTTAAGCCGGTTAAGCTGG
ATTCGACTACGGCCGGAGATTATGGTCAATATTATGCGATTATTGCCGAC
CATCCTTGGTTCAATCAACGCAATAGCATTTGTTGTCATACATCCACTTG
CTAGACGTTACGTTGCGGCACAAACTTCTCACTGGCTCTTCTTAATCTTT
AGACGTAACACTGTAGACTCCGATGAATGAATACACTCT Run BLAST on NCBI protein sequence of TCONS_00058677-protein >TCONS_00058677-protein ID=TCONS_00058677-protein|Name=TCONS_00058677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MLGNHSKAALGFGLDHSSNQSTTMLLNISTNNTFNSSFFNESQFCQQERS
GLFIGDKALHIFIALYGFFGCFGLPANAFVIFIIKTTRQSQNQSMELLMY
LSCVDLYSSVIALIRIPIFIHAEQLSCTGLRWSYFFTLISFYATNYLFAL
TGLDRFLRLKYLDEYDAKFTPLRFRITLYWYFALIIILPTVTTYLNTQYY
IGYASRYVLPFNIILVITTVIFYALSIFLLRRLRKFDNEVISDATQNILN
VTKIYFYLFIGFTGGTLCYLIILSRLSWIRLRPEIMVNIMRLLPTILGSI
NAIAFVVIHPLARRYVAAQTSHWLFLIFRRNTVDSDE Run BLAST on NCBI transcript from alignment at scaffold_312:95605..96793 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058677 ID=TCONS_00058677|Name=TCONS_00058677|organism=Clytia hemisphaerica|type=transcript|length=1189bp|location=Sequence derived from alignment at scaffold_312:95605..96793 (Clytia hemisphaerica)
AGAGTGTATTCATTCATCGGAGTCTACAGTGTTACGTCTAAAGATTAAGA
AGAGCCAGTGAGAAGTTTGTGCCGCAACGTAACGTCTAGCAAGTGGATGT
ATGACAACAAATGCTATTGCGTTGATTGAACCAAGGATGGTCGGCAATAA
TCGCATAATATTGACCATAATCTCCGGCCGTAGTCGAATCCAGCTTAACC
GGCTTAAGATGATAAGATAACATAGAGTTCCTCCAGTAAAACCGATGAAA
AGGTAAAAATAAATCTTTGTGACATTTAAGATATTTTGAGTGGCATCAGA
GATGACTTCGTTATCGAATTTTCGTAAACGGCGTAATAAGAAAATAGAGA
GCGCGTAAAAGATAACAGTTGTTATTACAAGTATAATATTAAAGGGTAAA
ACGTATCTGCTTGCGTATCCAATGTAGTATTGGGTATTCAGGTACGTTGT
GACGGTTGGTAAAATGATGATCAAAGCAAAATACCAGTAGAGCGTGATGC
GGAAGCGAAGCGGAGTGAATTTGGCGTCATACTCATCCAAGTATTTGAGT
CGTAAGAAGCGGTCGAGGCCGGTCAAAGCGAAAAGATAATTTGTGGCGTA
AAAAGAAATAAGCGTGAAAAAGTAGCTCCAACGCAATCCCGTACAACTCA
ATTGTTCCGCATGAATGAAAATTGGGATTCGAATCAAAGCTATGACGCTG
CTATACAAGTCAACACAAGACAAATACATCAACAGCTCCATAGATTGGTT
CTGCGATTGTCGCGTTGTCTTAATAATGAAAATGACAAAAGCATTAGCAG
GTAGTCCGAAACATCCAAAGAAACCATACAAGGCGATAAAAATGTGCAAT
GCTTTGTCCCCAATGAACAATCCCGATCTCTCTTGCTGACAAAATTGGCT
CTCattgaaaaatgatgaattGAAAGTATTATTGGTTGAAATGTTCAATA
ACATTGTTGTGGATTGATTGCTAGAATGATCGAGTCCAAAACCCAACGCT
GCCTTCGAATGGTTTCCCAGCATGATTTGATAGCTCAGTTGGTGGAGAAC
TTGGAGTAGCAAAGCCGACTTCGTGCTTAGTTTAGTAAATCGACACTAGA
TCGAGGTTAATATACTATCCCCGTGTTGGCACCGTACAGTGTTTGTTGAT
TAAGAGAGGTATGAACGGAAAAGACCACAcatattttcc Coding sequence (CDS) from alignment at scaffold_312:95605..96793 >TCONS_00058677 ID=TCONS_00058677|Name=TCONS_00058677|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_312:95605..96793 (Clytia hemisphaerica)
TCATTCATCGGAGTCTACAGTGTTACGTCTAAAGATTAAGAAGAGCCAGT
GAGAAGTTTGTGCCGCAACGTAACGTCTAGCAAGTGGATGTATGACAACA
AATGCTATTGCGTTGATTGAACCAAGGATGGTCGGCAATAATCGCATAAT
ATTGACCATAATCTCCGGCCGTAGTCGAATCCAGCTTAACCGGCTTAAGA
TGATAAGATAACATAGAGTTCCTCCAGTAAAACCGATGAAAAGGTAAAAA
TAAATCTTTGTGACATTTAAGATATTTTGAGTGGCATCAGAGATGACTTC
GTTATCGAATTTTCGTAAACGGCGTAATAAGAAAATAGAGAGCGCGTAAA
AGATAACAGTTGTTATTACAAGTATAATATTAAAGGGTAAAACGTATCTG
CTTGCGTATCCAATGTAGTATTGGGTATTCAGGTACGTTGTGACGGTTGG
TAAAATGATGATCAAAGCAAAATACCAGTAGAGCGTGATGCGGAAGCGAA
GCGGAGTGAATTTGGCGTCATACTCATCCAAGTATTTGAGTCGTAAGAAG
CGGTCGAGGCCGGTCAAAGCGAAAAGATAATTTGTGGCGTAAAAAGAAAT
AAGCGTGAAAAAGTAGCTCCAACGCAATCCCGTACAACTCAATTGTTCCG
CATGAATGAAAATTGGGATTCGAATCAAAGCTATGACGCTGCTATACAAG
TCAACACAAGACAAATACATCAACAGCTCCATAGATTGGTTCTGCGATTG
TCGCGTTGTCTTAATAATGAAAATGACAAAAGCATTAGCAGGTAGTCCGA
AACATCCAAAGAAACCATACAAGGCGATAAAAATGTGCAATGCTTTGTCC
CCAATGAACAATCCCGATCTCTCTTGCTGACAAAATTGGCTCTCattgaa
aaatgatgaattGAAAGTATTATTGGTTGAAATGTTCAATAACATTGTTG
TGGATTGATTGCTAGAATGATCGAGTCCAAAACCCAACGCTGCCTTCGAA
TGGTTTCCCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058677-exon-scaffold_312-1491911889:95605..96793 | TCONS_00058677-exon-scaffold_312-1491911889:95605..96793 | Clytia hemisphaerica | exon |
| TCONS_00058677-exon-scaffold_312-1510915933:95605..96793 | TCONS_00058677-exon-scaffold_312-1510915933:95605..96793 | Clytia hemisphaerica | exon |
| TCONS_00058677-exon-scaffold_312-1575043694:95605..96793 | TCONS_00058677-exon-scaffold_312-1575043694:95605..96793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_312 | supercontig | scaffold_312:95605..96793 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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