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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058575 ID=TCONS_00058575|Name=TCONS_00058575|organism=Clytia hemisphaerica|type=transcript|length=630bp
CCATTTGCCATTCACTGCACCATATAATATTTATCTTTCTTAACGTGCTC
catatataaaatgaaaaatacaccCCATCATAGCATAGGCTGCTGCTCAA
TAACTTTTTCAAATTGGTGACTAACAACCAATGGGATTTGATAACGATTG
ATTGTTTCgataatcgataggtACTGGACTGGAAAGCTTAACCACATTTA
AGAAAAGATGgtGGTTGAAACAGTAAAAGAACTTGACTTAGAAAAATACC
TAGGGAGATGGCACGAGGTAAGCActcattttcaaaggttttcCATTATT
ATCCTCGCCAGTTACGGTATAATTCTAACTGTCTTCTTAATTTCCGAATG
GATTCTTAAATTTGAATGTTGATGGAGATGTAGCCTacactagacgtcac
ccgcgcttttttctactttttcgaatgtttttttaacctgataacagctg
ttcataattttcttacgcgcacggtaaacctctaaagtggggggcgtacg
atctTACGGTACTCGGGATAAGGCCTAATTTAGGGCCGGGAAgcggtaaa
aacgataaaaagtgttCGGGAAACGGTATTTTGCAAGAGTCACGGTGACG
GTAAAACACCTGTTTTTCGTCCGGGATGgg Run BLAST on NCBI transcript from alignment at scaffold_311:1252722..1254353- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058575 ID=TCONS_00058575|Name=TCONS_00058575|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at scaffold_311:1252722..1254353- (Clytia hemisphaerica)
CCATTTGCCATTCACTGCACCATATAATATTTATCTTTCTTAACGTGCTC
CATATATAAAATGAAAAATACACCCCATCATAGCATAGGCTGCTGCTCAA
TAACTTTTTCAAATTGGTGACTAACAACCAATGGGATTTGATAACGATTG
ATTGTTTCGATAATCGATAGGTAATCAACAATTCATCTATTGGTTATCCA
TTGGGCATTGTTTGGAAAAAGTTATCGGCCGTGTTAATTTAAAAGTGTGA
GAGTCTGGATTTTTTACCTTTCAAAAACAAAGAGCAAAAGGTGCCTCTAA
ATCACGAAAAACTGAATTTTTTTTTCTTTAATTTGTGGAAGAGCCAAATT
TTATATTTTTAGGTACTGGACTGGAAAGCTTAACCACATTTAAGAAAAGA
TGGTAAGTTTCCAAATATTCTAAACTGATTTGATATGAGTAACCTAAAAA
TACTATATTTATAATTTTGTTGAAATTGGCTCTTTCAGAAAATTTTGGTG
GGGTGGAGGATCTCTTGATACTGTCTGGGGATCAATTTAAAATATACAAA
GGTTGCCTTGTCCACTTGCTCTCTTTGGGGTAGTTTTTAATTTATAGGGG
TCAACTGATGCTTATTCTGGGTTTACATGATTCCGACTGGGGTTCTAGGT
CCCCCCCCCGCCAAATTTAGGTCCCCCCTGAGAACAAGGTCCCCCCAGCC
TGATAAGATTTTAGGTCCCAGTATAGGGGAAAAATTTTATGGCATTCACA
AAGCTCTATTTACATGTGTGTGCACTTTTAGAGAATGCAATAGAATGTCT
TCATTTTTGCATTTTAAGGATCAGATCACACTTTGCATGAAAACATAAAG
GTTTAGATAAATTAAAAACCAACAGTAAAGAAGAATATTTGGGAAGTGTT
ATTTAGCCCCCAGAGTTACATAAACTAATGCAGGTAGGCCCGTCTGTCGG
GCCTGTCGGGAAAAACAAGCAGCTCCCACCTCTTATATGGCAAATTTTAG
GTGTGGGGTGCGAGCCATGGTTTAGATCTGCTGTCAGAGGAGGAGGGTTT
AAATTTCCAAAAAATGTTATATCTTCCACCACCACCATATTCAAATTCTT
TCTGGCATATTAACCAGATAGGTACCCAATATTAACATTTTAATTTTTAT
GAATAAATTTTAAAGTCACCAGGTGAGTTGAATTATTTTATTTTAATTGT
TTTGTTTTTAAGGTGGTTGAAACAGTAAAAGAACTTGACTTAGAAAAATA
CCTAGGGAGATGGCACGAGGTAAGCACTCATTTTCAAAGGTTTTCCATTA
TTATCCTCGCCAGTTACGGTATAATTCTAACTGTCTTCTTAATTTCCGAA
TGGATTCTTAAATTTGAATGTTGATGGAGATGTAGCCTACACTAGACGTC
ACCCGCGCTTTTTTCTACTTTTTCGAATGTTTTTTTAACCTGATAACAGC
TGTTCATAATTTTCTTACGCGCACGGTAAACCTCTAAAGTGGGGGGCGTA
CGATCTTACGGTACTCGGGATAAGGCCTAATTTAGGGCCGGGAAGCGGTA
AAAACGATAAAAAGTGTTCGGGAAACGGTATTTTGCAAGAGTCACGGTGA
CGGTAAAACACCTGTTTTTCGTCCGGGATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058575-exon-scaffold_311-1575043694:1254184..1254353 | TCONS_00058575-exon-scaffold_311-1575043694:1254184..1254353 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1575043694:1253952..1253991 | TCONS_00058575-exon-scaffold_311-1575043694:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1575043694:1252722..1253141 | TCONS_00058575-exon-scaffold_311-1575043694:1252722..1253141 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1510915933:1254184..1254353 | TCONS_00058575-exon-scaffold_311-1510915933:1254184..1254353 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1510915933:1253952..1253991 | TCONS_00058575-exon-scaffold_311-1510915933:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1510915933:1252722..1253141 | TCONS_00058575-exon-scaffold_311-1510915933:1252722..1253141 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1491911889:1254184..1254353 | TCONS_00058575-exon-scaffold_311-1491911889:1254184..1254353 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1491911889:1253952..1253991 | TCONS_00058575-exon-scaffold_311-1491911889:1253952..1253991 | Clytia hemisphaerica | exon |
| TCONS_00058575-exon-scaffold_311-1491911889:1252722..1253141 | TCONS_00058575-exon-scaffold_311-1491911889:1252722..1253141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1252722..1254353 - |
Blast
The following BLAST results are available for this feature:
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