TCONS_00058573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058573
Unique NameTCONS_00058573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058573 ID=TCONS_00058573|Name=TCONS_00058573|organism=Clytia hemisphaerica|type=transcript|length=485bp
gcacccggtagttaCAATTTACGGAAGGATGTACCTCAAAGGAAATGAAA
ATCTGAGAAGAAAGTCATAAAAGAATTCActcaagaaaaaacttttttca
tcatgattttaaaatattttttgataaaattgataataTCTACACAGAAC
GGTAAAAATGTTTGGAGAtggtttaaaaacaaacaatcaTATCTAATGGT
GTCCACCTCCTTTCTTCTTGTCAGCAAAAAACAATTCTTCAATGGTAGCA
GCAAGGATGAAAGCACCAACGCCCCAGGTAAATCCTGGGATAAAATTTCT
CATTAATCCTCTCTTAGGACAAAGTTCTGGGTGGTAACGCCACGCTTCAA
ATCGCGCCCATGGATCTTTCAACACTTGACCAGGTTTCTTGTACAATACC
ATTATattattttgtatatttttctatttattgctgaaaaatataaaaat
aaatatggatGAATATTCATGTATTTATTGAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_311:1222148..1222691-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058573 ID=TCONS_00058573|Name=TCONS_00058573|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at scaffold_311:1222148..1222691- (Clytia hemisphaerica)
GCACCCGGTAGTTACAATTTACGGAAGGATGTACCTCAAAGGAAATGAAA
ATCTGAGAAGAAAGTCATAAAAGAATTCACTCAAGAAAAAACTTTTTTCA
TCATGATTTTAAAATATTTTTTGATAAAATTGATAATATCTACACAGAAC
GGTAAAAATGTTTGGAGATGGTTTAAAAACAAACAATCATATCTAATGGT
GTCCACCTCCTTTCTTCTTGTCAGCAAAAAACAATTCTTCAATGGTAGCA
GCAAGGATGAAAGCACCAACGCCCCAGGTAAATCCTGGGATAAAGTTTCT
CATTAATCCTCTCTTAGGACAAAGTTCTGNCCCCAGGTAAATCCTGGGAT
AAAATTTCTCATTAATCCTCTCTTAGGACAAAGTTCTGGGTGGTAACGCC
ACGCTTCAAATCGCGCCCATGGATCTTTCAACACTTGACCAGGTTTCTTG
TACAATACCATTATATTATTTTGTATATTTTTCTATTTATTGCTGAAAAA
TATAAAAATAAATATGGATGAATATTCATGTATTTATTGAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036890XLOC_036890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058573-exon-scaffold_311-1575043694:1222415..1222691TCONS_00058573-exon-scaffold_311-1575043694:1222415..1222691Clytia hemisphaericaexon
TCONS_00058573-exon-scaffold_311-1575043694:1222148..1222355TCONS_00058573-exon-scaffold_311-1575043694:1222148..1222355Clytia hemisphaericaexon
TCONS_00058573-exon-scaffold_311-1510915933:1222415..1222691TCONS_00058573-exon-scaffold_311-1510915933:1222415..1222691Clytia hemisphaericaexon
TCONS_00058573-exon-scaffold_311-1510915933:1222148..1222355TCONS_00058573-exon-scaffold_311-1510915933:1222148..1222355Clytia hemisphaericaexon
TCONS_00058573-exon-scaffold_311-1491911889:1222415..1222691TCONS_00058573-exon-scaffold_311-1491911889:1222415..1222691Clytia hemisphaericaexon
TCONS_00058573-exon-scaffold_311-1491911889:1222148..1222355TCONS_00058573-exon-scaffold_311-1491911889:1222148..1222355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1222148..1222691 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
118.002	110.934	161.261	194.648	98.461	78.2161	114.196	109.694	108.104	86.2727	62.3806	74.3939	54.2004	54.4232	72.6257	67.599	163.465	153.106	43.9992	39.4646	101.663	94.2043	94.4734	70.3467	89.0167	78.8295	99.7617	83.1431	66.1999	58.2895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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