TCONS_00058455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058455
Unique NameTCONS_00058455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058455 ID=TCONS_00058455|Name=TCONS_00058455|organism=Clytia hemisphaerica|type=transcript|length=1785bp
CGATTGGGGTAGTACCCTACCTTTTGGGAACACCCAAGccaaatcaatat
ttttacatgttGGATCATAAGGTGGAAATTTGAGATTTGATGTGTGATTT
GggctttttttctcaattttattgTGATGGTCTAATTTTGAGCAATATTT
GCTGTTTCTTATGagttatcaatattttttgtctttttcagcTTCAGAGA
ATGTTTATAAATGAAACTTATCAACTTAggccaattttttaaatacaaaC
AGAATCTTCAATTGAATGTTAGATTGGTAAGGAATATAAGCGATTTAAAA
CATAAAGCATTGAAAGTTGCTTTCTTTGGAACTGATGAATTTAGTTTAAC
ACCATTGGAAAAACTTGTTCAATTGAGaaacGAAACAAACCTTGTAGAGG
AGGTGGCAGTCGTTTCTCAATTTGAAACCCAAAAGAAATCTACTAAAGGC
ATTATTCCAGTAGTCCATAGATATGTCAGAGAAAATGAACTACCAAAAAT
TCATTGGGAAGAGTTGAAGATAAATCCAAAacatCATCTCGATCATGATT
TGGCTATAGTTGCTTCTTTCGGTGAATTCATCCCTTCGAAGGTTATCAAG
TGTTTTCCAAAGGGTGCTATCAATATTCATCCTTCCTTGCTACCAAGATG
GCGGGGAGCTTCACCACTGATCCATACTATCCTTGCCGGTGATACAGTGA
CTGGAATTTCGTTCATTGAAATCTCACCCAAAAAATTTGATATTGGAAAG
ATCCTCTATCAAGCAGAGTTCCAGATCCCACCTCGATGTACAACTGAAAA
TTTGAGAGacattttatcaaataaagCTGCTGACTTGCTACCAGaagtaa
ttgacaatttacCAACGTTGAGGGAGAATTCAATTGACCAAGATGACTCT
GAAACAACTCATGCACCAAAGATATCAAAGACGGTGGGTTACATTGATTT
TCATGAACAGAATTGTGACGAAATCGAGCGAACTTATCGAGCTGTTGGTC
AACGGGTTGGTATTAAATCATTATGGGGTGGAAAACAAGTAAAGCTCGAG
AATATTGTAGACATCAAAATGGAAAATGagtcCGAAATAACACCAGGGAC
TTGCcaatattcgaaaaaagaacGAATGATTTGGATAAAATGCAAGACTG
GTTGGGTTGGTGTGGATGGATTTCAATTCGATCAACGAAAGAAAATAATC
TCCGCTCAATCGTTTTACAATGGTTACGTCATTGATAAACAGACTGGAAA
ACCTGGAAGCACAAAGTTCGAAACGATGATTGAATGACACTTCGGAGAAC
AATTTGAGCTTCAAAATGAGGGAAAGATGAAGGTCTGGTTCTCTACAGAA
ATTCAGTGTTAGCCTTGGAAACTTTAATAATCATTGCTGTGAAGTCATAA
TATCACCATGATTATTCTTACATCGCGGTTGAAATCTACTTTATCAGCTG
cttaaatatcatatttcatggAGTGCCCTAGAATATCGCCCTCCTACCTC
TTTAAATGAATGATTGAACAGCTTTAAAAGTTATTTGACAAAGTGAAGCA
CCGTCAGGCGAGATTCAAATGACGGAGGTTGTAGGTTGAAATTGATACAC
CTGCGATTTTCTCAAGGAGTTATTATTCGTGAAAAACAGTTCAGAACGCC
GGATGGATTCCAGTCccacaatgtttaaaaattgtaaaaggggACTAGTA
ACTAATTGTAGTATTTTCTGTTATTGTTCACTGCAAAGATATTTACATGA
ATGTATTGTTATATAGATTTCAGGGTATGCTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_311:610500..618587+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058455 ID=TCONS_00058455|Name=TCONS_00058455|organism=Clytia hemisphaerica|type=transcript|length=8088bp|location=Sequence derived from alignment at scaffold_311:610500..618587+ (Clytia hemisphaerica)
CGATTGGGGTAGTACCCTACCTTTTGGGAACACCCAAGccaaatcaatat ttttacatgttGGATCATAAGGTGGAAATTTGAGATTTGATGTGTGATTT GggctttttttctcaattttattgTGATGGTCTAATTTTGAGCAATATTT GCTGTTTCTTATGagttatcaatattttttgtctttttcagcTTCAGAGA ATGTTTATAAATGAAACTTATCAACTTAggccaattttttaaatacaaaC AGAATCTTCAATTGAATGTTAGATTGGTAAGGAATATAAGCGATTTAAAA CATAAAGCATTGAAAGTTGCTTTCTTTGGAACTGATGAATTTAGTTTAAC ACCATTGGAAAAACTTGTTCAATTGAGGTGAGTTATTTATCATAAGTCTT CTTTTTTAAAAGTAATGTTTGTTTATTTATATGTTATTTTACATTAATGC CAGTGCTGAATGTACCTTCATCTGGGCCGACCAATGTCGTGTCAAGAGAA GTAGGTACCACTGCCCTGATCTTCAAGGGTCTTTGGTGCGGTATGGACAG CTGTTATGTTCCAACTAAAAGAAATGCAGTATTTGTCCCATACATTTGAT TTCTCATGAAAGTGTGTGCTTTACTGAGATATTACAATTTCTACTACAAA CAAGTTCTAGCCTCTTTAGCGCATCTCActaacaaatttatttttagaaa cGAAACAAACCTTGTAGAGGAGGTGGCAGTCGTTTCTCAATTTGAAACCC AAAAGGTAACACATGAATTACAAACTTAAAAATCCAATCAGTATGTGGTA cttactttttggacctaccccggtggggtggaggtcctataaattaaccc gtgttcgttagttagttagttcgttcgttagttaccaccttttctcgaga ttggctcattcaatttttctgattttttgcacaaaggtgcattactataa accctcgaatgtgacggagcccgattttcgaaaaaaaaaattttccggcc ggtagaaccggaaatgtcccgaaaaagcggttttttgtcGAGAttttttc attagttttttgcgattttttgcacatagatgcacattagtactgccgaa aaggtgtcgaaaaccgtttgccgaaaaaaaaatttttccgggcTGTAGAA CCGGAattgtgccggaaatcgtcgttttttcacatttccgtcacgttttt tcaacttatttaattgtttctttacagaaaaatgttctttatgatgatgc ccaaaacttagcatcgtttgatttccaaaaactcatcctttgaatccgga attccttaaaaatcgccggaacagccgaaaaccggcgtaaaacggttttc cttcattttagGAACTTATActtgacagattttcatgattttttgcacaa tgatgtaaaatggcaatgcccaaaatgtgacagggcccaattttcgaaaa aggaatttttccggccgctagaaccggaaatgtcccgaaaaaagcggttt tttgagatttttttttttttgcgattttttgcacatagatgcacattagt actgccgaaaaggtgtcgaaaaccgtttgtcgaaaaaaaattttttccgg tctgtagaacctgAAATGTGCAGGAAATcttcgtttttttcacatttccg tcacattttttcaacttatttaattgtttctttacagaaaaatgttcttt atgatgatgcccaaaacttagcattgtttgattNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTTAAAAATcgcaaacgactaattttaatagatcgtcactatttgtgtt ctgaatgattgtttaacggtcatgctcacgtagatatcaattaaattata tatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttg cttaattttcaaagtaaatttttttttcacggtAAGAATTTTCTCTCTCT TATCCTCTTGTATATTGactaaattttatttattatttttctggAGTAGA AGAAGCAATACCTTGTATTGAAACtgatatgaaaacaaaaaatatgtaaa atcatcaaaatccatagattattttcatttcatccaTAGAAATCTACTAA AGGCATTATTCCAGTAGTCCATAGATATGTCAGAGAAAATGAACTACCAA AAATTCATTGGGAAGAGTTGAAGATAAATCCAAAGTATGCTTTTTTTTAA GAGAATCTAAATTTGGAAGGTCTAAATTGTCACTGACATAGACCCCAAAT GAGACATATCTTTTTCGTTATTAAACAGTCTTCCTCCACCACTAAGATCG TCTTTTTGAACCCCTGGATTTCACTTCCTTGAGCTAGGCAAATGTAGGTA TGTCTTAAAATAGGGTTTCATATGGACCCCCTCGTCGTCGTACAACCTTC TCAAcatggatttttgaaaaagcctAATTAAAATCCATCTTTTAATAAAT GACTTAATTaattttaaatactttttttaaagacatCATCTCGATCATGA TTTGGCTATAGTTGCTTCTTTCGGTGAATTCATCCCTTCGAAGGTTATCA AGTGTTTTCCAAAGTAAGTTACATTGTCTgtcttttattgacaattttct ttatcaaaacaCCCTTTTGGTACAGAtgcaatttttgtttacattatgTG AACAAGATGGGAGCTgaagttttcaaaattcatttctaTTTGCAAACTAA AGCTACCTGATAATGATATACAAGTAAGTAAAgcacaacctcgttccctg cgcactatcagcttttttatgcttactgatagtgcTAGACAAAAGAAGtt gcatcagccaacaccagggtattctctggcgccaatcagtaacgtaaata aagcctgaatacacggggacgaggttgagtaAAGCAATGAATCTCTTTGA CTTTTGTTCTTGATTTATATGTTTCTTACTTTTGATTTTATGAAACTCAT GATTTATTACTATTGCAGGGGTGCTATCAATATTCATCCTTCCTTGCTAC CAAGATGGCGGGGAGCTTCACCACTGATCCATACTATCCTTGCCGGTGAT ACAGTGACTGGAATTTCGTTCATTGAAATCTCACCCAAAAAGTATGTTGA CATTTTTCTAAAGAAGATTATATTGATTATTTACTATAATgtcaagaaag tttttttggttATATACAAAAAACTATTGTTTTCCTTGTTGGTTATAACA TCATCCCCTCTACTATAGAAAGTCTTTTAACGTTGCTGGGCCAAGTGTTG GAACGTGGAGTTTTTCTGTACaatgtttttcctttttgatgaaataattt tgtttcGATTTAGATTTGATATTGGAAAGATCCTCTATCAAGCAGAGTTC CAGGTAGATCTATAGTTCATTCTGCCTTGTGGAAACAATGCTATTGCAAT ttaactaccttaagggaagaaatttttgcggagcTTAATTTCGCGGCTCA CAGCTTGAAATTCGaaagttttgcggaatttaatttcgcggttgagagga ttttttgtttacaatatggcctaaaaaggcaaattttaaaaatgaatggt ctttagagcaaaataaataaaatactgaATACtcttcggggggggggggg gtttttttttccCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNggggggggggggggtattatTCTATCCCTTATTTCAAGC TTTTAGGATGAATTTCTAATTTCTGTACCTCTTCAGTTTACAGGATTTGT TTGCCAATACactcattttttataagcatacgggaaaTTGGGACGAGGCT CAATttgcttagcaaaatctcattttcagccttaatttatgcttTTTTAT ATGCGTAGACTTTCTTGTAGATTCGTTAATTTTCTTTGGATTCATGgaaa tttcatgaatttttaagtcggaacattgattcggctcaaagaatgaaagt tttctttgtaatttggcacTGCAGggaaaatctttggtctaaAAAGCTCA AATAGCTTGAAAAGTAACCCTTAAAGGTCAGTGTTTTAGAAGAGCTACAT GAATTTCttgcatttcagcttggaggtatgcttagcattttGCATATTAT TTTTGCTGAATTCGAGCATAAGTATGCTTATTATAAACGTTGATTaacgt ttttgaaaaaaaatatgacatctaatatttttcatattttatttttatca aataattaGATCCCACCTCGATGTACAACTGAAAATTTGAGAGacatttt atcaaataaagCTGCTGACTTGGTAAGAGAAGTTCAATTTTGAGTATTTC ACCAGTACTTTGGTTGCGATTTCAGACTTTTTATTTATCCAAGAATATCG AATAAATTCAGTTAAAGTTAAAGTCAGTTAAAGGTGTTTTTGAATTAGGt attattgttttgatcatCCTATTTCGATTGGAAATTTCAATGTGGTTCCA GTCCATGCTTCGAAAAGACGGGCAAACAGTGTGCGTTTTATTAAGTTCCa gtcgacgctctctaattcgatgttctaCTATTCTTAGATTTATTGAAAGT CGCCATTAGTAAGAAAGTctcccttttttgaaaaaaaaatctaattcctt ttgaaaatcagagcgtcaactgtattattTTTGTAGCTACCAGaagtaat tgacaatttacCAACGTTGAGGGAGAATTCAATTGACCAAGATGACTCTG AAACAACTCATGGTAAGGAAGATCATATTGAGACCTCCCAATTTGAAGGG CTGTTCCACTTTTGGACACACGTGTTCACCCCATATCACGTTAACTCGAC TGGTTTTTACGCTGTTTTATAGCCCTGCaatacaactgtcaatcattttt aagaaaactgattGGATGATTAATGTCACGTGGCCGGTCAATATTTCCCC ATAGTGACCagttatgaaattgacatcattaaaatgtcaatttttacgat gtaaaacaatagaatacacttgttaattacttttattactttattttcgC AGGGCTATAAATGGATTATTAACCTCAGAAGCCTGTCTCTCTTGCAAAAT ATCGACCTCGTTCGCtcgtattttaaaaatttcttgaaaatattcACAAG ACAAAACTTATTTACAGCCGATAATTAGTGAGTGAAAATCTATTCAGAAA ATAGGCGAAAAGTTGCACAGACCTGTGAAAATCTCTTTAATGCATGAATT TAGCTTAGGAATTAATTTTGGAAGTAAGCGTATTATGATATTATAATATA CCATGAGAATCATGAAAAGTGATTGTACTGTTTCGTGGTGAATAACGCTG GATTTGAATATTTCATTCACACTAATCTGAAAAATCTGATAAACGGATTT CTCTCACTAGAAAGTCTCTGTATctctttaaaatcaaaaaatttagtttt tgtgaTATGCAAACAATTTTTCTACACATAGAAGTGGTCTGACACAAGAC TTTTTTCAGTATATGTCCTTTTTAATTTTAGCACCAAAGATATCAAAGAC GGTGGGTTACATTGATTTTCATGAACAGAATTGTGACGAAATCGAGCGAA CTTATCGAGCTGTTGGTCAACGGGTAAGGATTCGTGAAATTGGGCTTCAT GgataattttgtgaattttttaatGGAATTCGATTCCATGACAAAATATT CCTTCATGGATAATTTTGTGAAATTGTTAATGGAATTCGATTCCATGACA AAATATTCCATTAATTTTTgcgaaacattaaaaaaattcttttttcagac ATTCGATGAATTCGTTTTTCCgcaaaaaagctaaattttctgaaattaaa atGCTCTCGTGTACTTCTTTATTAAGAtaacaaaatattaattttaatTA GGGATACTTTTAGACAGCAGTGGCTGGAAATGCTTCCTGCCTCTGTGATT CGCAGCGCTCCTAGTTCCACTCCAGACCCACCTTAAAGGACTGAAAGAAA TCGAGCAATCCCTTGTGATACCATTGGTACTTAACGGGTCAAATATCATT GTTTACATTTCGTAAAAACCAAGGGCTTTACCAAATTTAGTTTAATTTCT ACATTGTATTGAGATGAGATTTCAGCTTAAAAATGACGAAGTGATTTAAA CACACtcaggcaattacttttttattttctggtttacggaatcGCCGAcg tttttttcgcaaaaatgaaataaaaataaaattggattttacaaatattt tatttatttatgctCTTCCGACCTTGTACTGAACAGCCATAAAAAGGaaa ctttaaataaaattacattttataaaagcaaaaagGGCAAGTAAAAGGGT CAGTGTCCAGGCCTTTAATAACTTAAACACAATTTCCCTACTAAAAACGT TCTTTAATGTATGTaagttttctcaaaacattattttaattttttacaac attaaagtttgaaaagagcaattttatctccaaatgtccgtaaaccagaa aataaaaaagtaattgcctcaTACATAAAAAGGTGGGCGTTTTCGGCGGA TACTTGGTTGTTTTTAAAGATAATCTTTTTGAATTAAATCTTTTATTTTA GGTTGGTATTAAATCATTATGGGGTGGAAAACAAGTAAAGCTCGAGAATA TTGTAGACATCAAAATGGAAAATGGTAATTTAAAGCTGATAAACTTTTCC ACGAATGTTCGCAGTTTTTCATCTCTGAAAAAAGCAATCAAACTTTCCCA CTTTTTCTAATGGGCTTGATTTATCACATATTAGAAAAGTCTGCTGTTTG AATTTGATGACCGTtagtttgttttgaatattcaTGATaagaaacaatat tttttttttcagagtcCGAAATAACACCAGGGACTTGCcaatattcgaaa aaagaacGAATGATTTGGATAAAATGCAAGGTATGCATAGTGTGCATATA TTTCATCCccctattttaaaaatttttcgaacCTGCACCAACTACAATCG TGGTTCACAAACCGAAATCCCCCATTTTACTCggaaaatctcttatttct cctATAAAGCCTATGAAAAGTTGGATCCCCCCTTAAAGAAGGGGTCACAC TATGATGTTATGAAGTGTTTGGACAAAAAACggaaaaggttttgttttaa agaaaaCTAGTATAAAATAAACTTGGAAAAGTTAAAGTCTTTCACGTTCA TTCAATAGAAATCCCGACCACTGTCGCAATCATATTTTTTAAAAGTCACT TCTGTTTTTCTGGAACTGTAAGGATgatattcgattttttttaccATAGA CTGGTTGGGTTGGTGTGGATGGATTTCAATTCGATCAACGAAAGAAAATA ATCTCCGCTCAATCGTTTTACAATGGTTACGTCATTGATAAACAGACTGG AAAACCTGGAAGCACAAAGTTCGAAACGATGATTGAATGACACTTCGGAG AACAATTTGAGCTTCAAAATGAGGGAAAGATGAAGGTCTGGTTCTCTACA GAAATTCAGTGTTAGCCTTGGAAACTTTAATAATCATTGCTGTGAAGTCA TAATATCACCATGATTATTCTTACATCGCGGTTGAAATCTACTTTATCAG CTGcttaaatatcatatttcatggAGTGCCCTAGAATATCGCCCTCCTAC CTCTTTAAATGAATGATTGAACAGCTTTAAAAGTTATTTGACAAAGTGAA GCACCGTCAGGCGAGATTCAAATGACGGAGGTTGTAGGTTGAAATTGATA CACCTGCGATTTTCTCAAGGAGTTATTATTCGTGAAAAACAGTTCAGAAC GCCGGATGGATTCCAGTCccacaatgtttaaaaattgtaaaaggggACTA GTAACTAATTGTAGTATTTTCTGTTATTGTTCACTGCAAAGATATTTACA TGAATGTATTGTTATATAGATTTCAGGGTATGCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036835XLOC_036835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058455-exon-scaffold_311-1491911889:610500..610876TCONS_00058455-exon-scaffold_311-1491911889:610500..610876Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:610500..610876TCONS_00058455-exon-scaffold_311-1510915933:610500..610876Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:610500..610876TCONS_00058455-exon-scaffold_311-1575043694:610500..610876Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:611197..611254TCONS_00058455-exon-scaffold_311-1491911889:611197..611254Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:611197..611254TCONS_00058455-exon-scaffold_311-1510915933:611197..611254Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:611197..611254TCONS_00058455-exon-scaffold_311-1575043694:611197..611254Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:612739..612833TCONS_00058455-exon-scaffold_311-1491911889:612739..612833Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:612739..612833TCONS_00058455-exon-scaffold_311-1510915933:612739..612833Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:612739..612833TCONS_00058455-exon-scaffold_311-1575043694:612739..612833Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:613132..613212TCONS_00058455-exon-scaffold_311-1491911889:613132..613212Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:613132..613212TCONS_00058455-exon-scaffold_311-1510915933:613132..613212Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:613132..613212TCONS_00058455-exon-scaffold_311-1575043694:613132..613212Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:613618..613740TCONS_00058455-exon-scaffold_311-1491911889:613618..613740Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:613618..613740TCONS_00058455-exon-scaffold_311-1510915933:613618..613740Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:613618..613740TCONS_00058455-exon-scaffold_311-1575043694:613618..613740Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:613963..614002TCONS_00058455-exon-scaffold_311-1491911889:613963..614002Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:613963..614002TCONS_00058455-exon-scaffold_311-1510915933:613963..614002Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:613963..614002TCONS_00058455-exon-scaffold_311-1575043694:613963..614002Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:614909..614971TCONS_00058455-exon-scaffold_311-1491911889:614909..614971Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:614909..614971TCONS_00058455-exon-scaffold_311-1510915933:614909..614971Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:614909..614971TCONS_00058455-exon-scaffold_311-1575043694:614909..614971Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:615336..615411TCONS_00058455-exon-scaffold_311-1491911889:615336..615411Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:615336..615411TCONS_00058455-exon-scaffold_311-1510915933:615336..615411Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:615336..615411TCONS_00058455-exon-scaffold_311-1575043694:615336..615411Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:616181..616272TCONS_00058455-exon-scaffold_311-1491911889:616181..616272Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:616181..616272TCONS_00058455-exon-scaffold_311-1510915933:616181..616272Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:616181..616272TCONS_00058455-exon-scaffold_311-1575043694:616181..616272Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:617251..617323TCONS_00058455-exon-scaffold_311-1491911889:617251..617323Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:617251..617323TCONS_00058455-exon-scaffold_311-1510915933:617251..617323Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:617251..617323TCONS_00058455-exon-scaffold_311-1575043694:617251..617323Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:617512..617579TCONS_00058455-exon-scaffold_311-1491911889:617512..617579Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:617512..617579TCONS_00058455-exon-scaffold_311-1510915933:617512..617579Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:617512..617579TCONS_00058455-exon-scaffold_311-1575043694:617512..617579Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1491911889:617949..618587TCONS_00058455-exon-scaffold_311-1491911889:617949..618587Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1510915933:617949..618587TCONS_00058455-exon-scaffold_311-1510915933:617949..618587Clytia hemisphaericaexon
TCONS_00058455-exon-scaffold_311-1575043694:617949..618587TCONS_00058455-exon-scaffold_311-1575043694:617949..618587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:610500..618587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1267 22.0654 11.8325 9.30115 16.8646 13.0695 8.94389 8.78722 6.74778 5.63321 4.67077 4.87763 4.1665 2.04183 4.80953 2.82428 9.36781 7.40691 1.86465 3.30675 6.15297 6.69904 11.2789 10.8772 3.93434 4.75135 3.00446 2.31523 2.6231 3.43371
Blast
BLAST of TCONS_00058455 vs. Swiss-Prot (Human)
Match: FMT (Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens GN=MTFMT PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 8.070e-64
Identity = 119/336 (35.42%), Postives = 189/336 (56.25%), Query Frame = 1
Query:  313 KVAFFGTDEFSLTPLEKLVQLR--NETNLVEEVAVVSQFETQKKSTKGIIPVVHRYVRENELPKIHWEELKINPKHHLDHDLAIVASFGEFIPSKVIKCFPKGAINIHPSLLPRWRGASPLIHTILAGDTVTGISFIEISPKKFDIGKILYQAEFQIPPRCTTENLRDILSNKAADLLPEVIDNLPTLRENSIDQDDSETTHAPKISKTVGYIDFHEQNCDEIERTYRAVGQRVGIKSLWGGKQVKLENIVDI--------KMENESEITPGTCQYSKKERMIWIKCKTGWVGVDGFQFDQRKKIISAQSFYNGYV----IDKQTGKPGSTKFETM 1278
            +V FFGTD+F+   L  L   R   E  L++++ VV+       S KG+   V +Y  +++LP   W ++        ++D+ +VASFG  +   +I  FP G +N+HPS LPRWRG +P+IHT+L GDTVTG++ ++I PK+FD+G IL Q    +PP+ T + L  +LS   A++L  V+ NLP    N   Q     T+APKIS     I + EQ  ++I R YRA+G  + +++LW    +KL ++V++        K+  ++ I PG+  Y K+ +++ + CK GW+GV        KK ++A  FYNGY+          +P   +F+T+
Sbjct:   49 RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVT---MPSPSPKGL--PVKQYAVQSQLPVYEWPDVGSG-----EYDVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQALI-PGSVIYHKQSQILLVYCKDGWIGVRSVML---KKSLTATDFYNGYLHPWYQKNSQAQPSQCRFQTL 370          
The following BLAST results are available for this feature:
BLAST of TCONS_00058455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMT8.070e-6435.42Methionyl-tRNA formyltransferase, mitochondrial OS... [more]
back to top