TCONS_00005803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005803
Unique NameTCONS_00005803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=transcript|length=863bp
GGAGATCATACATTAAGTCGATATTTGACAAAGATAGCCCAAAAAGCTAG
ACAGTGTTTTTATTGTCTTCACGAATTCCATAGCAAGCCGGATCGGCAAT
CTACGAACTGAAAAGAACATTAACAGGAGTGGAGATTTGGATCGGGAGCC
TCTGGTCTCGAAACATGAGAAACGTTAGTACGGTAGGACTTAAGTTTCTT
CCAAAAGAAGGCCACCTTATAACGAAGAACGGTACTAGTTCTTCCTTAAC
AGGACATCTGGATACCATCTTTTCCCTACAAAATGCTGTACTGGTTGTAA
TACTTATCGCTTCGGTTACCGGTAATTCATACATCATCACCATGACTACC
TGGTCGCGATGGAAAAACAAACGTAAGGGTCGGAAATTAATCGATTATTT
AACGACACATCTTGCTGTAATGGATCTGTTACTGGTTATCATATCTGTAC
CTGAGATGTTGAGCCATAACATTTATTCCACTTTCAAGTTTGGTCCCATT
GGTTGTAAAGTCATTTATCCGTTATCCACTCACGCCGTCATTGCATCCGT
ACTAACGCTTCTTATCATCGCGTACGAACGTTATCAAGCGTCAAAAACAC
AGACTGTTATTATGCGTAGTAAGCATAAAACAATCATTTTATCGGCTGTC
AGTTTCGCTAGTATCGTTCTTGTCTGTCCTTACTCTTGGATCCTTACTTA
TGAGTCTAAATCTACGGTAGACGAAGCATTGTGTTTCGAAAGATGGGGCA
TGTCGTATCGAAGGATGTACACGTTGGTATTGTTTATTGTGCAGTACGCA
TGCCCAGTTCTGCTCATGAGTTATTATTACTACCACACGTGGAAGAATAT
AAAGACGTCTACA
Run BLAST on NCBI

protein sequence of TCONS_00005803-protein

>TCONS_00005803-protein ID=TCONS_00005803-protein|Name=TCONS_00005803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MRNVSTVGLKFLPKEGHLITKNGTSSSLTGHLDTIFSLQNAVLVVILIAS
VTGNSYIITMTTWSRWKNKRKGRKLIDYLTTHLAVMDLLLVIISVPEMLS
HNIYSTFKFGPIGCKVIYPLSTHAVIASVLTLLIIAYERYQASKTQTVIM
RSKHKTIILSAVSFASIVLVCPYSWILTYESKSTVDEALCFERWGMSYRR
MYTLVLFIVQYACPVLLMSYYYYHTWKNIKTST
Run BLAST on NCBI

transcript from alignment at sc0000059:443312..444174

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0000059:443312..444174 (Clytia hemisphaerica)
TGTAGACGTCTTTATATTCTTCCACGTGTGGTAGTAATAATAACTCATGA GCAGAACTGGGCATGCGTACTGCACAATAAACAATACCAACGTGTACATC CTTCGATACGACATGCCCCATCTTTCGAAACACAATGCTTCGTCTACCGT AGATTTAGACTCATAAGTAAGGATCCAAGAGTAAGGACAGACAAGAACGA TACTAGCGAAACTGACAGCCGATAAAATGATTGTTTTATGCTTACTACGC ATAATAACAGTCTGTGTTTTTGACGCTTGATAACGTTCGTACGCGATGAT AAGAAGCGTTAGTACGGATGCAATGACGGCGTGAGTGGATAACGGATAAA TGACTTTACAACCAATGGGACCAAACTTGAAAGTGGAATAAATGTTATGG CTCAACATCTCAGGTACAGATATGATAACCAGTAACAGATCCATTACAGC AAGATGTGTCGTTAAATAATCGATTAATTTCCGACCCTTACGTTTGTTTT TCCATCGCGACCAGGTAGTCATGGTGATGATGTATGAATTACCGGTAACC GAAGCGATAAGTATTACAACCAGTACAGCATTTTGTAGGGAAAAGATGGT ATCCAGATGTCCTGTTAAGGAAGAACTAGTACCGTTCTTCGTTATAAGGT GGCCTTCTTTTGGAAGAAACTTAAGTCCTACCGTACTAACGTTTCTCATG TTTCGAGACCAGAGGCTCCCGATCCAAATCTCCACTCCTGTTAATGTTCT TTTCAGTTCGTAGATTGCCGATCCGGCTTGCTATGGAATTCGTGAAGACA ATAAAAACACTGTCTAGCTTTTTGGGCTATCTTTGTCAAATATCGACTTA ATGTATGATCTCC

Coding sequence (CDS) from alignment at sc0000059:443312..444174

>TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000059:443312..444174 (Clytia hemisphaerica)
TGTAGACGTCTTTATATTCTTCCACGTGTGGTAGTAATAATAACTCATGA
GCAGAACTGGGCATGCGTACTGCACAATAAACAATACCAACGTGTACATC
CTTCGATACGACATGCCCCATCTTTCGAAACACAATGCTTCGTCTACCGT
AGATTTAGACTCATAAGTAAGGATCCAAGAGTAAGGACAGACAAGAACGA
TACTAGCGAAACTGACAGCCGATAAAATGATTGTTTTATGCTTACTACGC
ATAATAACAGTCTGTGTTTTTGACGCTTGATAACGTTCGTACGCGATGAT
AAGAAGCGTTAGTACGGATGCAATGACGGCGTGAGTGGATAACGGATAAA
TGACTTTACAACCAATGGGACCAAACTTGAAAGTGGAATAAATGTTATGG
CTCAACATCTCAGGTACAGATATGATAACCAGTAACAGATCCATTACAGC
AAGATGTGTCGTTAAATAATCGATTAATTTCCGACCCTTACGTTTGTTTT
TCCATCGCGACCAGGTAGTCATGGTGATGATGTATGAATTACCGGTAACC
GAAGCGATAAGTATTACAACCAGTACAGCATTTTGTAGGGAAAAGATGGT
ATCCAGATGTCCTGTTAAGGAAGAACTAGTACCGTTCTTCGTTATAAGGT
GGCCTTCTTTTGGAAGAAACTTAAGTCCTACCGTACTAACGTTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003301XLOC_003301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005803-exon-sc0000059-1491911889:443312..444174TCONS_00005803-exon-sc0000059-1491911889:443312..444174Clytia hemisphaericaexon
TCONS_00005803-exon-sc0000059-1510915933:443312..444174TCONS_00005803-exon-sc0000059-1510915933:443312..444174Clytia hemisphaericaexon
TCONS_00005803-exon-sc0000059-1575043694:443312..444174TCONS_00005803-exon-sc0000059-1575043694:443312..444174Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005803-proteinTCONS_00005803-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:443312..444174 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.146311 0.115617 0.0697435 0.130586 0 0.226493 0.384719 0.0722568 0 0 0 0 0 0 0.0576661 0.301717 0 0.0767489 0.0621989 0.141638 0.524186 0.103961 0.818222 0.793844 0.120421 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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