TCONS_00005868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005868
Unique NameTCONS_00005868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005868 ID=TCONS_00005868|Name=TCONS_00005868|organism=Clytia hemisphaerica|type=transcript|length=2628bp
GAACCACCTTCAAATATGAAGATTTTATTCACATCAAAACAATTTGACAA
TCTAGCAACCAATAACAGAACACTGTCAAAGATTCCAAATTTGAGTGAAG
ATGATTGCAGGCAGAATATTGGATTTAAGCCAATTAAATCACATTCTGAG
GAGAACTTTATGGATGATCTTACTTCAAAGAAAGATGACTGCAATGATGC
AGCATTTCGAGAACCTACAGTCAATAAAACTGGATTCCAACCAATCAAAC
GTCCTGGTGCTAACCCTCAGAAGTCGGAAAGAGGATTTGACCAGGAAATA
TCAAGTTGCTCGAAATATGTCTCAgccaatcaaaagaaagatgcTGACTT
TTTTCGTCAGAATTTTGATGACGAGGAATTTGTATCTGTTGATGGAAATC
TGAATAGTtcaataactttaaaaaaagcaaacttAGCTGTCCAAAAGGAG
NGTAACTGTTGATGGAAATCTGAATAGTTCAATGACTTTGAAAGAAGCAA
ACTTAGCTCTCCAAAAGGAACATTCACATTCAAACCAGAACGGTGAAGAT
TCTATTAAAATCGGTATCGAAAATAAAGCTAAATCAGATTCCCTGTTTCA
AGATGACGATAACGAAGAAACTGGCAATGATTCCGTTTTAAGGAGACACG
AGGATTCCCCTGTTGAGCATGGTGAATATGCTTATGGAGACGATTCCAAt
caatcaaataaaagaataattaaAGTTGGACGAGATCaagaagaagataa
aaaatctgaaaacgaCAATGATGCTCTTCTTATGGATGATTTAGAACAGG
GCTTAGAGGTAGTTGACGATCTTTTGTATAGTCATATTAATGACGAAGTC
GATAAAAAACGAATGAGTTCGAATAAGAGGCGTACGTTTAATCGACAGAA
AACGGTTGTCAGGGAATCAGTTATTAAACGAATGGAATCGATTGGTGAAA
GCAAACAAAAGGTTGAGACAATAAACGATTCCGAATCGCATTTTGATGAA
AGACTTGATGATGAGAATTCTATGATTAGCCAAGCTGCAAACACTGAGGA
TTCCCTGAAAACACCAATGATAGATGATGATCAAACTCAACATGGCGATT
CCCTGGAAATGCAAAATGCGTGCATTAGAGCTACTTTGGAAAATCAAAGC
GTAACGAGTGAAGACTCCCTGGTTAAAACTCATATAAATAGGCATTATAA
TTCCCTCAAAATACAAGACACTAAAGCAGATGAGCAGAATAGAATTGAGG
ATTCCCTGGATCTACCATCTTTTACCAGACCTGGGATAATCACAGGACGG
ACAACAACGTTGGCAAGTTGTGAAGAAGAGAGACGAAATATTAATGAAGA
AGTGGATGAGTTATCAACAGATGAGGAGAGTCGATTTTTCACGCAAGAGA
AAGACGAGTTATCTTCTGATGATAATTCAGGATATCGAAGAAGAAAACAT
TACAAACGAGAATGTTGTTAACGCAGAGTTTCGAGATTTTCGCAATAAAA
TACCAAGACCTCATTATCTGGAAAAATCGCCTCACAcagatgaaaaagtt
tttgatttgactCAATCTAGTCCTGATAATATCAACAAAGACGTCGAGAG
GGAAGCAGTTATTGAGAACCTTGTGGAGAATGCAAATCTCCTTGACTTTC
AAATTGAGGAGTCTCAACCAGacgaaaatgttgataaatcAAGCAAAAGC
TACCATGCCATCCAAAGACGTTTGGTTGATGAAGACGTTATCAGCAAGAT
AGATGCAACTCAGGAAGAACTGCAATGTGAACCAGTGATTCTCTTATTTG
ACGATCATTTGGATTCTGAAGATGACCGTATCATCGCCAAGGAATCACTC
AATTTGTACCCGGTCAAACTACAAAGGGAAAAACTTGtcgaaaaagaaga
cattactgCTGGACAATATTTAAGTTCTATTGACACAAGTCGAAAAGAAC
AGGAAATTCGACAAATATTTGCAGACCCTGATCTCGTTTCGAAAGCCGAA
TTGCAGCCTCTTGATCAGTTAACAAACAACCTATCGTCTGAACAAGAAAT
GTACAAAAATGATTTTGGTAATTCACAAGACCAAGCCTTGGTGAATGGAC
ATTCAAATTCTGACCAGACAGAATCAAACAACAGTCGTTTCATGGATAAA
ATTTTCATGCATAGTCGCAGTGTTTCTTTCAGCGATAGTGAATCATTAGA
GCTGGAAGTTGAAATCTGTATTGACGAGAATgacaatgaaaacaaaagtg
gtgaTTGGATAGAAAAATCTATTGATGCCGACAGACCAACGTCAAACGCT
ACCGAAATGGACGGTTTTTATTCAGAGGTCGAAGTTATAGACCATGAACA
GTGCAATGAAGTAAAAACATCTTCCGGCAAACCTCATTCTATAGATATCA
ATAACAACAAACGCCTAGAACTGGACgataaatcaattttgaaagacCAA
CATCAGTCAGACAAGCAATCTTCTTTAAACTCCAAGGAAGCGTTTAAAAT
CGAAGAGGATCGATCAAATAGAGCTTGTGGCGAATCTCCAGCACTTTCAG
AAGTTCAACCATACACCATCAAAGATGAAATTCAATACAGCAAATACTTT
AATACAGATCTCGCTAACAAAGAAACGG
Run BLAST on NCBI

transcript from alignment at sc0000061:986692..990390+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005868 ID=TCONS_00005868|Name=TCONS_00005868|organism=Clytia hemisphaerica|type=transcript|length=3699bp|location=Sequence derived from alignment at sc0000061:986692..990390+ (Clytia hemisphaerica)
GAACCACCTTCAAATATGAAGATTTTATTCACATCAAAACAATTTGACAA
TCTAGCAACCAATAACAGAACACTGTCAAAGATTCCAAATTTGAGTGAAG
ATGATTGCAGGCAGAATATTGGATTTAAGCCAATTAAATCACATTCTGAG
GAGAACTTTATGGATGATCTTACTTCAAAGAAAGATGACTGCAATGATGC
AGCATTTCGAGAACCTACAGTCAATAAAACTGGATTCCAACCAATCAAAC
GTCCTGGTGCTAACCCTCAGAAGTCGGAAAGAGGATTTGACCAGGAAATA
TCAAGTTGCTCGAAATATGTCTCAgccaatcaaaagaaagatgcTGACTT
TTTTCGTCAGAATTTTGATGACGAGGAATTTGTATCTGTTGATGGAAATC
TGAATAGTtcaataactttaaaaaaagcaaacttAGCTGTCCAAAAGGAG
NGTAACTGTTGATGGAAATCTGAATAGTTCAATGACTTTGAAAGAAGCAA
ACTTAGCTCTCCAAAAGGAACATTCACATTCAAACCAGAACGGTGAAGAT
TCTATTAAAATCGGTATCGAAAATAAAGCTAAATCAGATTCCCTGTTTCA
AGATGACGATAACGAAGAAACTGGCAATGATTCCGTTTTAAGGAGACACG
AGGATTCCCCTGTTGAGCATGGTGAATATGCTTATGGAGACGATTCCAAt
caatcaaataaaagaataattaaAGTTGGACGAGATCaagaagaagataa
aaaatctgaaaacgaCAATGATGCTCTTCTTATGGATGATTTAGAACAGG
GCTTAGAGGTAGTTGACGATCTTTTGTATAGTCATATTAATGACGAAGTC
GATAAAAAACGAATGAGTTCGAATAAGAGGCGTACGTTTAATCGACAGAA
AACGGTTGTCAGGGAATCAGTTATTAAACGAATGGAATCGATTGGTGAAA
GCAAACAAAAGGTTGAGACAATAAACGATTCCGAATCGCATTTTGATGAA
AGACTTGATGATGAGAATTCTATGATTAGCCAAGCTGCAAACACTGAGGA
TTCCCTGAAAACACCAATGATAGATGATGATCAAACTCAACATGGCGATT
CCCTGGAAATGCAAAATGCGTGCATTAGAGCTACTTTGGAAAATCAAAGC
GTAACGAGTGAAGACTCCCTGGTTAAAACTCATATAAATAGGCATTATAA
TTCCCTCAAAATACAAGACACTAAAGCAGATGAGCAGAATAGAATTGAGG
ATTCCCTGGATCTACCATCTTTTACCAGACCTGGGATAATCACAGGACGG
ACAACAACGTTGGCAAGTTGTGAAGAAGAGAGACGAAATATTAATGAAGA
AGTGGATGAGTTATCAACAGATGAGGAGAGTCGATTTTTCACGCAAGAGA
AAGACGAGTTATCTTCTGATGATAATTCAGGTAAGGTgtttgtactagta
ataacatggtttagagggtgatttgggattaataaccccgaggttcattg
aaaacatttcaaaatagcccgaacgtagtgagttacaaatctaagctaaa
tgtaatcaaccataagTGTTATTCCTATTGAGTTTAAGGTTCCGAAgcgg
ctagagaggaatcttcaacctttcacaagcaagaaaaagtgaaaccttaa
gATTTGCGACGCGTTAAGAATGATGAATCTagctctttctttgtttttta
agcGGTATATTTTTTGGCGATAGGTTTTACTTTTAATCTGgcatttgtgt
gaaaaccaaaCGCACCACACGTTTTGGATGAGAtctcttgttttcaaaaa
atcaccctaaaattgaaattgtgACATTAGCTTTTTCTACTCATGCTACA
ACCTTCAAACTTTACGGAACCAATCACCCAATCACTACCCTGTTTGGATC
ATTTCATGAATTCAACACTAATCCAGTTTTAAGATTTGACAATTTCCTTA
AAGTacccttatcggccctttttacaccgaccctaatttaacgccggccc
cttttacgcaggcccttattacgccacagcctaattttgggcttacgcca
attagggccgttaataacgctaaaatttgtaaaaatggctacttatgctt
catattagtaaataatgactaaaatttaaattaaaatgtcatttttcagt
agtaaactgttgaaaattccatcgaaaatcactgaattttaaatatatta
aatattttactgaagttttaaatatggagtaaaacaatggataattttcg
tcttcaaatcatacctaaaatcctttaaattgagaaataatgataataaa
ttgcaaaatcttggcccttattacgccacgagtccaaaaataacgccaat
aaggacCGATGTAAAAAGTGCCGATAAGGTACGTTAAAAATGACCTTGAT
TTTTACAAAGTCATGAAACTTAGAAAATCTATAACGTTGTATAAATGAAA
CAGCATTCATAGCTAGCCTAGAAATCTTCTCTATTCTCCGTTTTTCTTTT
AGATATCGAAGAAGAAAACATTACAAACGAGAATGTTGTTAACGCAGAGT
TTCGAGATTTTCGCAATAAAATACCAAGACCTCATTATCTGGAAAAATCG
CCTCACAcagatgaaaaagtttttgatttgactCAATCTAGTCCTGATAA
TATCAACAAAGACGTCGAGAGGGAAGCAGTTATTGAGAACCTTGTGGAGA
ATGCAAATCTCCTTGACTTTCAAATTGAGGAGTCTCAACCAGacgaaaat
gttgataaatcAAGCAAAAGCTACCATGCCATCCAAAGACGTTTGGTTGA
TGAAGACGTTATCAGCAAGATAGATGCAACTCAGGAAGAACTGCAATGTG
AACCAGTGATTCTCTTATTTGACGATCATTTGGATTCTGAAGATGACCGT
ATCATCGCCAAGGAATCACTCAATTTGTACCCGGTCAAACTACAAAGGGA
AAAACTTGtcgaaaaagaagacattactgCTGGACAATATTTAAGTTCTA
TTGACACAAGTCGAAAAGAACAGGAAATTCGACAAATATTTGCAGACCCT
GATCTCGTTTCGAAAGCCGAATTGCAGCCTCTTGATCAGTTAACAAACAA
CCTATCGTCTGAACAAGAAATGTACAAAAATGATTTTGGTAATTCACAAG
ACCAAGCCTTGGTGAATGGACATTCAAATTCTGACCAGACAGAATCAAAC
AACAGTCGTTTCATGGATAAAATTTTCATGCATAGTCGCAGTGTTTCTTT
CAGCGATAGTGAATCATTAGAGCTGGAAGTTGAAATCTGTATTGACGAGA
ATgacaatgaaaacaaaagtggtgaTTGGATAGAAAAATCTATTGATGCC
GACAGACCAACGTCAAACGCTACCGAAATGGACGGTTTTTATTCAGAGGT
CGAAGTTATAGACCATGAACAGTGCAATGAAGTAAAAACATCTTCCGGCA
AACCTCATTCTATAGATATCAATAACAACAAACGCCTAGAACTGGACgat
aaatcaattttgaaagacCAACATCAGTCAGACAAGCAATCTTCTTTAAA
CTCCAAGGAAGCGTTTAAAATCGAAGAGGATCGATCAAATAGAGCTTGTG
GCGAATCTCCAGCACTTTCAGAAGTTCAACCATACACCATCAAAGATGAA
ATTCAATACAGCAAATACTTTAATACAGATCTCGCTAACAAAGAAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003352XLOC_003352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005868-exon-sc0000061-1491911889:986692..988121TCONS_00005868-exon-sc0000061-1491911889:986692..988121Clytia hemisphaericaexon
TCONS_00005868-exon-sc0000061-1510915933:986692..988121TCONS_00005868-exon-sc0000061-1510915933:986692..988121Clytia hemisphaericaexon
TCONS_00005868-exon-sc0000061-1575043694:986692..988121TCONS_00005868-exon-sc0000061-1575043694:986692..988121Clytia hemisphaericaexon
TCONS_00005868-exon-sc0000061-1491911889:989193..990390TCONS_00005868-exon-sc0000061-1491911889:989193..990390Clytia hemisphaericaexon
TCONS_00005868-exon-sc0000061-1510915933:989193..990390TCONS_00005868-exon-sc0000061-1510915933:989193..990390Clytia hemisphaericaexon
TCONS_00005868-exon-sc0000061-1575043694:989193..990390TCONS_00005868-exon-sc0000061-1575043694:989193..990390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:986692..990390 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11331	0.117091	0.0721275	0.048631	0.157264	0	0.322432	0	0.125719	0.256483	0	2.25865e-10	0	0.134657	0.0237599	0.0223286	0.0687691	0.13778	0	0	0.28629	0.300526	0.0307312	0.113584	0.620512	0.714423	0.00728102	0	0.0298502	0.0317219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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