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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005801 ID=TCONS_00005801|Name=TCONS_00005801|organism=Clytia hemisphaerica|type=transcript|length=2280bp
GATAGTTGTAAAACATTGAAAATACAACTCTTCACTGATATACCGCTCTA
TCGGTGTCATAGAGCACTTTTTTGAATCGCAAGTCAGATTTGCGAAGAAA
ATACAACTCACATATACGGAGACTTGAAAATCGAtgtcaaaacttaaaat
tttcaaaaatgtcaacATTTTTGGAAGGAGCGAGAAGGAGTGTTCTGCAA
AATTTGCAAGAGCTAATAAACGAGCTGACGAGCAATGTTCTAACAGAACA
AGAAACCAAGCTATATGACGCAGACCCTGAGGCTATAGTACACCGTTCCA
ATAATAATACACTCAGGAGTGAACAAATACCGAATGGTCTGGAAGATTTT
ACTATCGAGGATGATATATTTGAAGAATTCAACTCTATTTCGAATGCTAA
GAATGAAATCCTTGAATGGAGAGACAATAGGATTGTGTCAAAATGCTTAT
GGTTTTTCCAATGTTTTTACATGACTTTCTTTATGATTGTGACATGCACT
GTTTCAGTCAGTTTGATCGTGGTTGGTCTCTGGTATTTAGATTTCATCGT
CTTTGATGGTCTGCAAATTACACATAAACAAGTcaccaatgacgtcatcg
agtGGTTTTTTATGTGCTGGATGTACTTGGCAATAATGAGTTTAATATTC
ACATTTAAATTTGTCCGAAGTTTGAGTCTGTCAAGCTTGAATGCGATGAT
CGCATTAATAGGATGTGTGTATAAACTCTTCATCTACTTATACTCAATGA
AAGATGAGATTGTCGTAAAAGTTCCATTGAACGTTCTATTTGCAGCTCTG
TACATTACCAATAGTTCAAGAATCAGCCGTAAATTTTACAAAGGTCAACT
CAGCAAACAGATGGTTCTTTTCTTCCAACTTTCCTGTCAATTCATCTATG
GTTCCATCATTTTCTACGCAACCAAACATCTCTTCCTACCTCGATACAAG
GAGCTGACTATTACCACTGAGAAACTGATTTTCttggttttgtgctcgtt
agcATTGATGATATGCAGAACTCTGGCTCGAACGAATGTCCAAAATATGT
GTTATGTCAATCACCCGGGGTCGACGTACATTCTACTATCACTGGTAAAC
GCGTTGACTATATCTCTCTACAGAATAAGACAATCTGAAATGGACACGCT
ATGGCAATTtactgttttttcttttatcattggtTTGTTTGGATTATTGG
AGAAAATCACCATGGTGATTGttgatcatttttttatttggatgtaTCGT
AAATGTATTGTGTTGGAAAAAGACATGAATTCTTATGTTGGGAAATATAG
AACACCTAGAAGTCAGCGTTTATTAGCTGACAACATTGTTTGCTCGGTTA
TACAAGAATGCTGTGTGATTGCCATTTCGAATGCTATATACCAACTCAAT
GATGGTCATATTTTTGTCACAAAAATGTTCGGCATTCGAACCTTATTAGC
TCTTATACTGGAATTCATATTTTCGCTGCTTTCAGTTTTCTTGGTGACTT
GGTATTTTAATATTCCAGTATTGAAAACATGGCGCAAAAGATGGGGTCGA
TTCTTTTTGGTTACTTTGTTGACAGTTTTGTTTCCCGTCTTCCTTATAAC
GAGAATGGGAAAATAGACACGTGGTTCCTGGTCATTTTACGATATAAgct
agtctgaatcacagacctctacaaaaccgcaggtagtataaGGAGAACAt
ttccgttagtggatgcctgCAGCCTAGAAATAAGCTAGACTAGCAACTAG
TCTGTTTATCAATCATGTCAAAGAGTGGAGATATAAGGGCGGcaggcgtt
tgctgaaaaagaaattgtgaaGGGGAACGAGGATAAGTTAGGACCCTGTC
TCCGCCGACAATTTTCCTTCCTTCCCTTACCTTCTGCTCTCATTTTTCGT
ATATGATATCGTTCCAGCCCGATCGCTGTACCAATCTAACGATGAGCGTT
CACTCTTTTTGCTACCACGAGGGTACCAATTTCACGAGAAATCGTTCAAA
TATACTATGCCTTTCAACAtaatacccagctggcacacaacgttgtttta
acgttcaaataacgttatttggacgttatgaatgtcaaatggacgttgtt
ttgacgttgacAAATCTTAAGAGTAGTACAGTTGACTCTTGCTAATCCGA
ACTCGAACAGGGAACTTTATTTGTTCTATTTTTGAAAGTATATTCAGAGA
GTTTATCTTTGATGACGGGGACTGGGAATAAGTTCGAACTAACGAGAGTC
TACTATATTTAAAgtttaattgaaattttg Run BLAST on NCBI protein sequence of TCONS_00005801-protein >TCONS_00005801-protein ID=TCONS_00005801-protein|Name=TCONS_00005801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MSTFLEGARRSVLQNLQELINELTSNVLTEQETKLYDADPEAIVHRSNNN
TLRSEQIPNGLEDFTIEDDIFEEFNSISNAKNEILEWRDNRIVSKCLWFF
QCFYMTFFMIVTCTVSVSLIVVGLWYLDFIVFDGLQITHKQVTNDVIEWF
FMCWMYLAIMSLIFTFKFVRSLSLSSLNAMIALIGCVYKLFIYLYSMKDE
IVVKVPLNVLFAALYITNSSRISRKFYKGQLSKQMVLFFQLSCQFIYGSI
IFYATKHLFLPRYKELTITTEKLIFLVLCSLALMICRTLARTNVQNMCYV
NHPGSTYILLSLVNALTISLYRIRQSEMDTLWQFTVFSFIIGLFGLLEKI
TMVIVDHFFIWMYRKCIVLEKDMNSYVGKYRTPRSQRLLADNIVCSVIQE
CCVIAISNAIYQLNDGHIFVTKMFGIRTLLALILEFIFSLLSVFLVTWYF
NIPVLKTWRKRWGRFFLVTLLTVLFPVFLITRMGK Run BLAST on NCBI transcript from alignment at sc0000059:343569..345848 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005801 ID=TCONS_00005801|Name=TCONS_00005801|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at sc0000059:343569..345848 (Clytia hemisphaerica)
caaaatttcaattaaacTTTAAATATAGTAGACTCTCGTTAGTTCGAACT
TATTCCCAGTCCCCGTCATCAAAGATAAACTCTCTGAATATACTTTCAAA
AATAGAACAAATAAAGTTCCCTGTTCGAGTTCGGATTAGCAAGAGTCAAC
TGTACTACTCTTAAGATTTgtcaacgtcaaaacaacgtccatttgacatt
cataacgtccaaataacgttatttgaacgttaaaacaacgttgtgtgcca
gctgggtattaTGTTGAAAGGCATAGTATATTTGAACGATTTCTCGTGAA
ATTGGTACCCTCGTGGTAGCAAAAAGAGTGAACGCTCATCGTTAGATTGG
TACAGCGATCGGGCTGGAACGATATCATATACGAAAAATGAGAGCAGAAG
GTAAGGGAAGGAAGGAAAATTGTCGGCGGAGACAGGGTCCTAACTTATCC
TCGTTCCCCttcacaatttctttttcagcaaacgcctgCCGCCCTTATAT
CTCCACTCTTTGACATGATTGATAAACAGACTAGTTGCTAGTCTAGCTTA
TTTCTAGGCTGcaggcatccactaacggaaaTGTTCTCCttatactacct
gcggttttgtagaggtctgtgattcagactagcTTATATCGTAAAATGAC
CAGGAACCACGTGTCTATTTTCCCATTCTCGTTATAAGGAAGACGGGAAA
CAAAACTGTCAACAAAGTAACCAAAAAGAATCGACCCCATCTTTTGCGCC
ATGTTTTCAATACTGGAATATTAAAATACCAAGTCACCAAGAAAACTGAA
AGCAGCGAAAATATGAATTCCAGTATAAGAGCTAATAAGGTTCGAATGCC
GAACATTTTTGTGACAAAAATATGACCATCATTGAGTTGGTATATAGCAT
TCGAAATGGCAATCACACAGCATTCTTGTATAACCGAGCAAACAATGTTG
TCAGCTAATAAACGCTGACTTCTAGGTGTTCTATATTTCCCAACATAAGA
ATTCATGTCTTTTTCCAACACAATACATTTACGAtacatccaaataaaaa
aatgatcaaCAATCACCATGGTGATTTTCTCCAATAATCCAAACAAacca
atgataaaagaaaaaacagtaAATTGCCATAGCGTGTCCATTTCAGATTG
TCTTATTCTGTAGAGAGATATAGTCAACGCGTTTACCAGTGATAGTAGAA
TGTACGTCGACCCCGGGTGATTGACATAACACATATTTTGGACATTCGTT
CGAGCCAGAGTTCTGCATATCATCAATgctaacgagcacaaaaccaaGAA
AATCAGTTTCTCAGTGGTAATAGTCAGCTCCTTGTATCGAGGTAGGAAGA
GATGTTTGGTTGCGTAGAAAATGATGGAACCATAGATGAATTGACAGGAA
AGTTGGAAGAAAAGAACCATCTGTTTGCTGAGTTGACCTTTGTAAAATTT
ACGGCTGATTCTTGAACTATTGGTAATGTACAGAGCTGCAAATAGAACGT
TCAATGGAACTTTTACGACAATCTCATCTTTCATTGAGTATAAGTAGATG
AAGAGTTTATACACACATCCTATTAATGCGATCATCGCATTCAAGCTTGA
CAGACTCAAACTTCGGACAAATTTAAATGTGAATATTAAACTCATTATTG
CCAAGTACATCCAGCACATAAAAAACCactcgatgacgtcattggtgACT
TGTTTATGTGTAATTTGCAGACCATCAAAGACGATGAAATCTAAATACCA
GAGACCAACCACGATCAAACTGACTGAAACAGTGCATGTCACAATCATAA
AGAAAGTCATGTAAAAACATTGGAAAAACCATAAGCATTTTGACACAATC
CTATTGTCTCTCCATTCAAGGATTTCATTCTTAGCATTCGAAATAGAGTT
GAATTCTTCAAATATATCATCCTCGATAGTAAAATCTTCCAGACCATTCG
GTATTTGTTCACTCCTGAGTGTATTATTATTGGAACGGTGTACTATAGCC
TCAGGGTCTGCGTCATATAGCTTGGTTTCTTGTTCTGTTAGAACATTGCT
CGTCAGCTCGTTTATTAGCTCTTGCAAATTTTGCAGAACACTCCTTCTCG
CTCCTTCCAAAAATgttgacatttttgaaaattttaagttttgacaTCGA
TTTTCAAGTCTCCGTATATGTGAGTTGTATTTTCTTCGCAAATCTGACTT
GCGATTCAAAAAAGTGCTCTATGACACCGATAGAGCGGTATATCAGTGAA
GAGTTGTATTTTCAATGTTTTACAACTATC Coding sequence (CDS) from alignment at sc0000059:343569..345848 >TCONS_00005801 ID=TCONS_00005801|Name=TCONS_00005801|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000059:343569..345848 (Clytia hemisphaerica)
CTATTTTCCCATTCTCGTTATAAGGAAGACGGGAAACAAAACTGTCAACA
AAGTAACCAAAAAGAATCGACCCCATCTTTTGCGCCATGTTTTCAATACT
GGAATATTAAAATACCAAGTCACCAAGAAAACTGAAAGCAGCGAAAATAT
GAATTCCAGTATAAGAGCTAATAAGGTTCGAATGCCGAACATTTTTGTGA
CAAAAATATGACCATCATTGAGTTGGTATATAGCATTCGAAATGGCAATC
ACACAGCATTCTTGTATAACCGAGCAAACAATGTTGTCAGCTAATAAACG
CTGACTTCTAGGTGTTCTATATTTCCCAACATAAGAATTCATGTCTTTTT
CCAACACAATACATTTACGAtacatccaaataaaaaaatgatcaaCAATC
ACCATGGTGATTTTCTCCAATAATCCAAACAAaccaatgataaaagaaaa
aacagtaAATTGCCATAGCGTGTCCATTTCAGATTGTCTTATTCTGTAGA
GAGATATAGTCAACGCGTTTACCAGTGATAGTAGAATGTACGTCGACCCC
GGGTGATTGACATAACACATATTTTGGACATTCGTTCGAGCCAGAGTTCT
GCATATCATCAATgctaacgagcacaaaaccaaGAAAATCAGTTTCTCAG
TGGTAATAGTCAGCTCCTTGTATCGAGGTAGGAAGAGATGTTTGGTTGCG
TAGAAAATGATGGAACCATAGATGAATTGACAGGAAAGTTGGAAGAAAAG
AACCATCTGTTTGCTGAGTTGACCTTTGTAAAATTTACGGCTGATTCTTG
AACTATTGGTAATGTACAGAGCTGCAAATAGAACGTTCAATGGAACTTTT
ACGACAATCTCATCTTTCATTGAGTATAAGTAGATGAAGAGTTTATACAC
ACATCCTATTAATGCGATCATCGCATTCAAGCTTGACAGACTCAAACTTC
GGACAAATTTAAATGTGAATATTAAACTCATTATTGCCAAGTACATCCAG
CACATAAAAAACCactcgatgacgtcattggtgACTTGTTTATGTGTAAT
TTGCAGACCATCAAAGACGATGAAATCTAAATACCAGAGACCAACCACGA
TCAAACTGACTGAAACAGTGCATGTCACAATCATAAAGAAAGTCATGTAA
AAACATTGGAAAAACCATAAGCATTTTGACACAATCCTATTGTCTCTCCA
TTCAAGGATTTCATTCTTAGCATTCGAAATAGAGTTGAATTCTTCAAATA
TATCATCCTCGATAGTAAAATCTTCCAGACCATTCGGTATTTGTTCACTC
CTGAGTGTATTATTATTGGAACGGTGTACTATAGCCTCAGGGTCTGCGTC
ATATAGCTTGGTTTCTTGTTCTGTTAGAACATTGCTCGTCAGCTCGTTTA
TTAGCTCTTGCAAATTTTGCAGAACACTCCTTCTCGCTCCTTCCAAAAAT
gttgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005801-exon-sc0000059-1491911889:343569..345848 | TCONS_00005801-exon-sc0000059-1491911889:343569..345848 | Clytia hemisphaerica | exon |
| TCONS_00005801-exon-sc0000059-1510915933:343569..345848 | TCONS_00005801-exon-sc0000059-1510915933:343569..345848 | Clytia hemisphaerica | exon |
| TCONS_00005801-exon-sc0000059-1575043694:343569..345848 | TCONS_00005801-exon-sc0000059-1575043694:343569..345848 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:343569..345848 . |
Blast
The following BLAST results are available for this feature:
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