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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058189 ID=TCONS_00058189|Name=TCONS_00058189|organism=Clytia hemisphaerica|type=transcript|length=1919bp CAAAACAAGAGACTTCAATGACTAGACAAACCATTAGCTTTGTGCAGCAA GCAATTATCACAATGATTTCTACTGTCATGGAAACTGTCATGAATGGCAC CAGCGGCAAAATAATATGCAGTATCTTGCTCGAAGTCTCTGTTTACTACG TCCTCTATGTTCCAATTATGATTAATTATAAACTATCCaagaaattaaca aaattgtcTGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAA GAAAGCGGTCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGT ATATGAATTATGATTATTGCTTCGAAATCATCGGCCAATTGTTTGATTTC TTCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGAAAGTGC AGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGCGAGAAC CTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTATCCTATA ACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTTAGCCTA TATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCCATATTA TTGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATCATTGGA CAATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCTCGCAAT AGTACTGTACATCAATTATGGTCATCCAACAATTTTAGGATATATTCCCC TCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAATTTGATT TCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTATCTTACC ACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCTTACTAT CTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAATGCATTT TTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAGCCTTAA TGCTAACGCTGCAGCCTTCATCTTCAGATATACACCGATCCTTGTGAATC ACGTGATCAGTTCAACCTCATACGTCATCTCGCTCTACGTCAGTCTCCTT TTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGCAAATCAAGTTGTC CAATAAAATCTCTCAATAAATGAATAACTGTTTTACCGTAtaaatttttg tatatattttcaaagaattatggataataacttttttttaaacacaTTGG ATATTTTTAAACACATTTTGGATTATTTGACACGTATATATTTTATTGAT GAGAACACGATGAGAACAATTTTTGATCCTTAAATCGGTCAGATAGAACA CACATGAAACAAGACGAAAAGGACGACGGAAACTTTACAATGGACTTCTT CACGATAACGACACAGTATCAAAATTTGCGAGGAACATTACCAGACAAAA CTACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAATATGCAAA AACGCGGCGATTCNCGAGGAACATTACCAGACAAAACTACTAAGACAAAG CAGAAATCAATAGACGAACATACGGTAATGTGCAAAAACGCGGCGATTCA CTGGGAACATTATATACCAGACATATTGAATAAATCTTGACTCCTTGACT GTTTAATGCATATAATCGAGATCAAAATAATTTGGTGGAACGGATCGACA GAGACGTTAAGCTAAAGAATAAAGAAACAGAAAGATTTGTCAGGATATTC ACGAAGGGCTAAAAATCAAACAGCAAACAAGATTTGAATCCTGGTTGCTC TATGACACTAACTTTTGGTGAAACGGGTTTGCTGGAATAGGCGAAAGGAT AAAAATTGTAATTCAGAAGGGAAAGAGTTCTCACCAGAAAGGAGCTTGTA TATTGTATTGTAAATAAAT Run BLAST on NCBI protein sequence of TCONS_00058189-protein >TCONS_00058189-protein ID=TCONS_00058189-protein|Name=TCONS_00058189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
KQETSMTRQTISFVQQAIITMISTVMETVMNGTSGKIICSILLEVSVYYV LYVPIMINYKLSKKLTKLSDALSQPFTVVLTLKKAVIIWILAISFSILMY MNYDYCFEIIGQLFDFFGQFWEPEYKPTTLESAVSWFGIGNQVFKAKREP IFVKVWMDWLSTNYPITSKVLVFSSVVLSPLAYIRMPIIVAAIIFLVHII GSLTTAILSTIRNIIGQSSWKSIVLTMTSSLAIVLYINYGHPTILGYIPL LLQGSNVVIKLGINLISNIIEVYVSFFMAIILPPLIIMSIADFQAGILLS KVLGMISRNVTKRNAFLVLRVSVLVFCCTISLNANAAAFIFRYTPILVNH VISSTSYVISLYVSLLFAVILPLFVIWAQIKLSNKISQ Run BLAST on NCBI transcript from alignment at scaffold_308:60788..63927+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058189 ID=TCONS_00058189|Name=TCONS_00058189|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at scaffold_308:60788..63927+ (Clytia hemisphaerica) CAAAACAAGAGACTTCAATGACTAGACAAACCATTAGCTTTGTGCAGCAA
GCAATTATCACAATGATTTCTACTGTCATGGAAACTGTCATGAATGGCAC
CAGCGGCAAAATAATATGCAGTATCTTGCTCGAAGTCTCTGTTTACTACG
TCCTCTATGTTCCAATTATGATTAATTATAAACTATCCaagaaattaaca
aaattgtcTGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAA
GAAAGCGGTCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGT
ATATGAATTATGATTATTGCTTCGAAATCATCGGGTAAGTTAAACTCCTC
TAATAATCTTAAAATGTTATCCTCTTCCTCCCAATTTTAGTTTTGAGAGC
GGCGTCGACACAACGTGGTAAGCCCTCCTTCCAGATGCCTACCCCAAACT
TATATAAGACAATGACATTAGATTCTATTGAAAAGAATTTATCATTatat
tatcttttttatttattaaatagaatttattattttattattgtttAGCC
AATTGTTTGATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAACG
ACCCTGGAAAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAA
AGCTAAGCGAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTA
CCAACTATCCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTG
TCACCTTTAGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTTT
CCTGGTCCATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATCC
GAAATATCATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGACG
TCATCGCTCGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTTT
AGGGTATGTCATTGCCAACAATGCTTTCTGATACatgctaaatattttta
caagcaTTTTGGTAAATAAACGTATATATAAGGGAATGAACGAACCGGAA
GGAATAGCTAGCTCATTAGGTTTGGCGTGCGCTTCACCATACAAGAGGGT
CCCCATACAAAGGGGGCAATTGTCAATCATCAACGTTCTCCTTGGAAGat
aatgaatgaaaaagtttcttCTCGATCGGTCTCAAGGAGTTTGATGCACA
GAAGTTATTAGTTACTAAATGATTGCTGAGAGCAGGCCCGAATCAGTGAT
AACTCAACTGCATAGTTAGCGCAAGCTACAACTTGGAATTTGGTGTTTGC
TAGTCAtacaaacaaaaatataaaataatatcAACGTCCATCAAACCTCT
AGATGTGAGACAGTAGCCCGATAATTGAATTCTCATTTCTATTTTAGATA
TATTCCCCTCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTA
ATTTGATTTCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATT
ATCTTACCACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAAT
CTTACTATCTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAA
ATGCATTTTTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATC
AGCCTTAATGCTAACGCTGCAGCCTTCATCTTCAGGTAAGGGCTTTCTAC
CAATTTACTTTGCTTTCTTTGACAGCTGATGGAAAAGCGTATGAATCCCT
ACCCAAATCAGACAAGATTAATTAACTCAaacctctactattcgaatctt
tcaaataattcgaacaaaaatattggtCGTCTCAGCTAGAAAGTAGTATA
taatactctctgtaatttgGATCCTTTTCtatttcgaagaaaattcttgg
ttccttcccagctggcacacaacgtcgtttcaacgttcatctaacgttag
atggacgttgaaacaacgttgtgtgccagctgggttaaaGATCGAATTGg
aaagagtcaactgtattttatTTGAAGTTATAAGCTGCTATtggttgtga
acattagatggacgttgaaacaacgttgtgtgccagctgggttaaagatc
gaattggagagagtcaactgtattttatTTGAAGTTATAAGCTGCTATTG
GTTTTGGGAATCTCATCCAATTTATTTTCTCCTTATAGATATANTTATAA
GCTGCTCTTGGTTTTGGGAATCTCATCCAATTTATTTTCTCCTTATAGAT
ATACACCGATCCTTGTGAATCACGTGATCAGTTCAACCTCATACGTCATC
TCGCTCTACGTCAGTCTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCAT
TTGGGCGCAAATCAAGTTGTCCAATAAAATCTCTCAATAAATGAATAACT
GTTTTACCGTAtaaatttttgtatatattttcaaagaattatggataata
acttttttttaaacacaTTGGATATTTTTAAACACATTTTGGATTATTTG
ACACGTATATATTTTATTGATGAGAACACGATGAGAACAATTTTTGATCC
TTAAATCGGTCAGATAGAACACACATGAAACAAGACGAAAAGGACGACGG
AAACTTTACAATGGACTTCTTCACGATAACGACACAGTATCAAAATTTGC
GAGGAACATTACCAGACAAAACTACTAAGACAAAGCAGAAATCAATAGAC
GAACATACGGTAATATGCAAAAACGCGGCGATTCNCGAGGAACATTACCA
GACAAAACTACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAAT
GTGCAAAAACGCGGCGATTCACTGGGAACATTATATACCAGACATATTGA
ATAAATCTTGACTCCTTGACTGTTTAATGCATATAATCGAGATCAAAATA
ATTTGGTGGAACGGATCGACAGAGACGTTAAGCTAAAGAATAAAGAAACA
GAAAGATTTGTCAGGATATTCACGAAGGGCTAAAAATCAAACAGCAAACA
AGATTTGAATCCTGGTTGCTCTATGACACTAACTTTTGGTGAAACGGGTT
TGCTGGAATAGGCGAAAGGATAAAAATTGTAATTCAGAAGGGAAAGAGTT
CTCACCAGAAAGGAGCTTGTATATTGTATTGTAAATAAAT Coding sequence (CDS) from alignment at scaffold_308:60788..63927+ >TCONS_00058189 ID=TCONS_00058189|Name=TCONS_00058189|organism=Clytia hemisphaerica|type=CDS|length=4668bp|location=Sequence derived from alignment at scaffold_308:60788..63927+ (Clytia hemisphaerica) AAACAAGAGACTTCAATGACTAGACAAACCATTAGCTTTGTGCAGCAAGC AATTATCACAATGATTTCTACTGTCATGGAAACTGTCATGAATGGCACCA GCGGCAAAATAATATGCAGTATCTTGCTCGAAGTCTCTGTTTACTACGTC CTCTATGTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaaa attgtcTGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAGA AAGCGGTCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGTAT ATGAATTATGATTATTGCTTCGAAATCATCGGCCAATTGTTTGATTTCTT CGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGAAAGTGCAG TGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGCGAGAACCT ATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTATCCTATAAC CTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTTAGCCTATA TTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCCATATTATT GGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATCATTGGACA ATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCTCGCAATAG TACTGTACATCAATTATGGTCATCCAACAATTTTAGGATATATTCCCCTC CTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAATTTGATTTC AAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTATCTTACCAC CGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCTTACTATCT AAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAATGCATTTTT GGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAGCCTTAATG CTAACGCTGCAGCCTTCATCTTCAGATATACACCGATCCTTGTGAATCAC GTGATCAGTTCAACCTCATACGTCATCTCGCTCTACGTCAGTCTCCTTTT CGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGCAAATCAAGTTGTCCA ATAAAATCTCTCAATAAAAACAAGAGACTTCAATGACTAGACAAACCATT AGCTTTGTGCAGCAAGCAATTATCACAATGATTTCTACTGTCATGGAAAC TGTCATGAATGGCACCAGCGGCAAAATAATATGCAGTATCTTGCTCGAAG TCTCTGTTTACTACGTCCTCTATGTTCCAATTATGATTAATTATAAACTA TCCaagaaattaacaaaattgtcTGATGCACTCAGTCAACCTTTCACTGT TGTCTTAACTTTGAAGAAAGCGGTCATCATCTGGATATTGGCAATATCGT TTTCCATTTTAATGTATATGAATTATGATTATTGCTTCGAAATCATCGGC CAATTGTTTGATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAAC GACCCTGGAAAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCA AAGCTAAGCGAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCT ACCAACTATCCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATT GTCACCTTTAGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTT TCCTGGTCCATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATC CGAAATATCATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGAC GTCATCGCTCGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTT TAGGATATATTCCCCTCCTACTACAAGGATCAAATGTAGTCATCAAACTT GGCATTAATTTGATTTCAAACATCATTGAAGTATACGTTAGCTTCTTCAT GGCAATTATCTTACCACCGCTGATCATTATGTCTATTGCTGACTTCCAAG CTGGAATCTTACTATCTAAAGTCCTCGGTATGATTTCAAGAAACGTGACA AAGAGAAATGCATTTTTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTG TACAATCAGCCTTAATGCTAACGCTGCAGCCTTCATCTTCAGATATACAC CGATCCTTGTGAATCACGTGATCAGTTCAACCTCATACGTCATCTCGCTC TACGTCAGTCTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGC GCAAATCAAGTTGTCCAATAAAATCTCTCAATAAAAACAAGAGACTTCAA TGACTAGACAAACCATTAGCTTTGTGCAGCAAGCAATTATCACAATGATT TCTACTGTCATGGAAACTGTCATGAATGGCACCAGCGGCAAAATAATATG CAGTATCTTGCTCGAAGTCTCTGTTTACTACGTCCTCTATGTTCCAATTA TGATTAATTATAAACTATCCaagaaattaacaaaattgtcTGATGCACTC AGTCAACCTTTCACTGTTGTCTTAACTTTGAAGAAAGCGGTCATCATCTG GATATTGGCAATATCGTTTTCCATTTTAATGTATATGAATTATGATTATT GCTTCGAAATCATCGGCCAATTGTTTGATTTCTTCGGACAATTTTGGGAA CCTGAGTACAAGCCAACGACCCTGGAAAGTGCAGTGAGCTGGTTTGGAAT CGGTAACCAAGTCTTCAAAGCTAAGCGAGAACCTATTTTCGTTAAAGTTT GGATGGACTGGCTATCTACCAACTATCCTATAACCTCAAAAGTATTGGTA TTCAGCAGCGTGGTATTGTCACCTTTAGCCTATATTCGTATGCCCATAAT TGTCGCTGCCATCATTTTCCTGGTCCATATTATTGGTTCATTGACAACAG CTATACTAAGTACAATCCGAAATATCATTGGACAATCTTCATGGAAATCT ATTGTTTTAACCATGACGTCATCGCTCGCAATAGTACTGTACATCAATTA TGGTCATCCAACAATTTTAGGATATATTCCCCTCCTACTACAAGGATCAA ATGTAGTCATCAAACTTGGCATTAATTTGATTTCAAACATCATTGAAGTA TACGTTAGCTTCTTCATGGCAATTATCTTACCACCGCTGATCATTATGTC TATTGCTGACTTCCAAGCTGGAATCTTACTATCTAAAGTCCTCGGTATGA TTTCAAGAAACGTGACAAAGAGAAATGCATTTTTGGTTTTGAGGGTTTCA GTGTTGGTTTTCTGCTGTACAATCAGCCTTAATGCTAACGCTGCAGCCTT CATCTTCAGATATACACCGATCCTTGTGAATCACGTGATCAGTTCAACCT CATACGTCATCTCGCTCTACGTCAGTCTCCTTTTCGCTGTCATTCTACCG CTGTTCGTCATTTGGGCGCAAATCAAGTTGTCCAATAAAATCTCTCAATA AAAACAAGAGACTTCAATGACTAGACAAACCATTAGCTTTGTGCAGCAAG CAATTATCACAATGATTTCTACTGTCATGGAAACTGTCATGAATGGCACC AGCGGCAAAATAATATGCAGTATCTTGCTCGAAGTCTCTGTTTACTACGT CCTCTATGTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaa aattgtcTGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAG AAAGCGGTCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGTA TATGAATTATGATTATTGCTTCGAAATCATCGGCCAATTGTTTGATTTCT TCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGAAAGTGCA GTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGCGAGAACC TATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTATCCTATAA CCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTTAGCCTAT ATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCCATATTAT TGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATCATTGGAC AATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCTCGCAATA GTACTGTACATCAATTATGGTCATCCAACAATTTTAGGATATATTCCCCT CCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAATTTGATTT CAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTATCTTACCA CCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCTTACTATC TAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAATGCATTTT TGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAGCCTTAAT GCTAACGCTGCAGCCTTCATCTTCAGATATACACCGATCCTTGTGAATCA CGTGATCAGTTCAACCTCATACGTCATCTCGCTCTACGTCAGTCTCCTTT TCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGCAAATCAAGTTGTCC AATAAAATCTCTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058189-exon-scaffold_308-1491911889:60788..61121 | TCONS_00058189-exon-scaffold_308-1491911889:60788..61121 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1510915933:60788..61121 | TCONS_00058189-exon-scaffold_308-1510915933:60788..61121 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1575043694:60788..61121 | TCONS_00058189-exon-scaffold_308-1575043694:60788..61121 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1491911889:61336..61740 | TCONS_00058189-exon-scaffold_308-1491911889:61336..61740 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1510915933:61336..61740 | TCONS_00058189-exon-scaffold_308-1510915933:61336..61740 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1575043694:61336..61740 | TCONS_00058189-exon-scaffold_308-1575043694:61336..61740 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1491911889:62185..62472 | TCONS_00058189-exon-scaffold_308-1491911889:62185..62472 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1510915933:62185..62472 | TCONS_00058189-exon-scaffold_308-1510915933:62185..62472 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1575043694:62185..62472 | TCONS_00058189-exon-scaffold_308-1575043694:62185..62472 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1491911889:63036..63927 | TCONS_00058189-exon-scaffold_308-1491911889:63036..63927 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1510915933:63036..63927 | TCONS_00058189-exon-scaffold_308-1510915933:63036..63927 | Clytia hemisphaerica | exon |
TCONS_00058189-exon-scaffold_308-1575043694:63036..63927 | TCONS_00058189-exon-scaffold_308-1575043694:63036..63927 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_308 | supercontig | scaffold_308:60788..63927 + |
Blast
The following BLAST results are available for this feature:
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