TCONS_00057867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057867
Unique NameTCONS_00057867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057867 ID=TCONS_00057867|Name=TCONS_00057867|organism=Clytia hemisphaerica|type=transcript|length=588bp
CATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAGAC
TACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaattattc
aaaaagtaaaagattGCAACAAAAGAGCAAAATAACAGAAGATCTCAAAA
TGCTGCTCGATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACA
AGTTAAATAAACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaa
aatattttggctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAAT
GCAATTCGAAACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTT
AAACTCCCTTAAACTCTTAAAATTaaagagattttttaaattataagATT
GTATATAGGTAATGTTCTGCACAATATATGaattaatattttgattttat
gatGGGTGtatattgttttgatttatttttgtactGTATAGAAAAAACTT
TGACTTAATAAATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtt
tttcataaattttgtcCACTCTCTAAATTAAATCTTgc
Run BLAST on NCBI

transcript from alignment at scaffold_30:7487..15864+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057867 ID=TCONS_00057867|Name=TCONS_00057867|organism=Clytia hemisphaerica|type=transcript|length=8378bp|location=Sequence derived from alignment at scaffold_30:7487..15864+ (Clytia hemisphaerica)
CATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAGAC
TACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaattattc
aaaaagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATCAGCC
ATCAGCTTTGGTAAGTTTtctgtgttttcattttatttttagatgaaaaa
taagcacgaccctgccgattccccggGGAATCACGGTAGAGCGCggtggt
ttgagttttctggaagccttatttattaagctgtgcatttttctgatagt
ggattgTTAAATACAGCAGagttagggcaaaagagggtaTTTCTCAAACA
AAAGCGGCATTCAatgatgcaagagttagattgaTGGTGTCTATTGAATA
GCAAACTAATCTTACAATAATAACTGGTTTGgaggtcaatattttacgtA
TTGACCAAGAAAACAGTTATATTATTGTGTTTATTAACTGGTGAACATTC
TTTGTGCGTTTCTGGccaaaaaaatgcattttccaCTCATtttaggaccc
tgccgacgcaccggacttaacgaacaccggacacgcgaaagtccggtgta
aaatgagaatttttttaccaccggacaatttctacaccggattTAAGGAA
GTCAGGTGTCCGGTGTcgaagaaggatattttttcccaacGGACAATCAa
tacaccggacatgaccagtccggtgcgtccggtgtttcttaattttttgt
ttcataaatgtccggcgtccaaaattccctgtatgcaacaccggactgac
accgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAccccggac
tgacaccggacttattgcgtccggtgtagcgaaaggatactttttgccac
cggacaaatacaccggacagtccggtgcgtcggcagggtcctctcatttt
ccatgattttttcgtttcttttttacccaatattttctttgatttattcT
GACGTCACTTTGTTATGAGAAGTCATTGCAACGTCAGCTTTTACTTCAAC
CAGTTAATAATATCCAGTACAAACTGAATAAATTATCATGTACCTAGGTG
CTGTGTTGTAAATGACAAATCTtaagttttcattaaaaaaatttctactg
GGTTTATTAGTTATTCATAAGACGAAgttctcccaaacaactattttttg
attggaaaaaataaaacatcGATCAATACGGTGATTATTTGGCAGATTCA
TAAGTGTCTGtgattaaacaaaataaaataataattctaTTTCCTTGTTC
TTCATGCTCGCAAATTCAAGAGtttttctctttgatcttttattgGTCTC
TTTTGTTGATTGCTTGTGTGTCATCAATGACTCCCGAGTCATTTCTTGAA
ATGGAAACACACAAATTTTACCAAGCTGAATATCTGTATATaatatagac
cttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCATCA
AAATAGCGGTGAGAAAAAATTAGTGTACACTTGTTATAGTTATGCCTTGA
AATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTACA
TCTTTATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaagcca
ATTATTGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTTTGAC
TGTGCTGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatctaGACC
AAAGTTATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGAGA
TTCAGAAAAAGATTGACGAAGCAAGTAAACGAAGAGAGgtaattaaaaat
gtttaaaatgttGTATCATTCCATTTTACTATAAAATAATAAGCAGACAG
GCCATTTCTCATGTCCTTTTAGTGTCCGGTTATCGGACACTGCCCTTCCC
GAATTTGCAaagattttggtaaaaacagcctttttggTGAAAAACAGCCT
TATAATACCATACTTTTTCTAACTTCTAtttatcataaaaaaattcactc
cattaagaattagtgaataaggctgAACCTGTGTGGAAACACGTGGGAGA
GGCCAGTATTTTTCNATTTTACCAAGCTGAATATCTGTATATaatataga
ccttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCATC
AAAATAGTGATGAGAAAAAATTAGTATACACTTGTTATAGTTATGCCTTG
AAATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTAC
ATCTTTATAAGCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCTGATATCAATAAAGATAGTTGACATGCTACC
GATATTTTGATTGTTCCAAACCATTCCCCGCTCGTGTGCAGTCTGACACG
GCACAAACACTCCCAGTTATTCAAAGCGATTTCTATTCCCCTTGGGGAAT
TAAAGTTCAATTGAAAATCTGgtggaaaaacaatttttcaattcgaaCTC
CTGGCTATTTGAagtaaattcttaaaaattatcCCCCTTGGAGCTTTGAA
TAACTGGAGGTCTACtgtatctttttcaaaaagactcccaataaaaataa
ttgaatgCCTCTGTAACTATAATAGAAGCATGTGCTTAATCCCAATTTCT
ACCAAGCCTTAAAAATATGAGATTTCTGCATGCTGcattatttattattt
caattattctgCACtacagtaaaatcaaaaaaaattcaacacaATAGCAA
AGAATATTTTCATACCTTTTTGACGAGATATGCTTTGCTTGTTGCATCAG
ATAAGCAATAGAATGAAGCTACAGCATAACTTAAACCGACAACTCTTTTT
GATACAAATTGTCTAAAAGCTTCTCCAACCTCGTTGGCATAACCTGTTTG
GAAagtaaaataaaacatttttgtgTTATTTCAGTTAATTTGCACTGGTC
TTTAGGGGGAGTTAATACTGAAACNCTTGTgttatttcagttaattttca
ctGGTCTTTAGGGGGAGTTAATACTGAAACATCCTGTTGGAAGTAAATAT
CTCAAATAAATTATGAATATAATTTCAGGTGCTAGCAAAATTTCAGATTC
CAggcaatttaatttaatttaatttaaactTCTAAGAAATTTATACGCTT
TTACAACATAGCTGTTACCAAGGTACCTACAAAATAGTTTATCCCGTTTG
TACTGGCTGGAGTATTTTGTTATTGAATAGACCGGTTGACAGGTTGACCG
CCACGTTCTCCCAAAAACTATTTTGCAGGGTTTGAGGATTTAGCAAGGAT
GAAAAAAACCATCCCAGTAGAAATACGCAGAACTACGCAGAACACTTGCA
AACTCCCTAATgggggaaaaaaatttcaacctgtcaatcattttgatttt
ctcaatatccttttattttcatttctggaacTTTTGTCTTTTATTGCATT
tgcaaaaacaggaaaaatacaaaagttgtTACTGCTGATTTTTCTCCTGC
TTTTCCGGGACTTTAGCTAAAGTGCTTGTGTGCAGCATtaggtacaaagt
ccaaattaaaaaatttggtttgacCAAGGGCTGTTATACCACCAACAACT
AACTGCACTGCacacacaaaaaaacaaaaattaaaaaagatacCATCAGA
TCATTATTGGAAAAACAGTATACCTAAGTATCTTATTGGAGTATCTCTGA
AATAATCTATCTCATCATCTTTCTGCTTTGCTCTGGTCTGATCACTCATT
TCCCTCGAACAGCTGCTAGTCTTGGTCTGATGATGACCTGGTCAAAGACA
GACAGAAAAAAAGGACCAAAGTCAAGTTAGCGACACATTCAGCGACACAT
TCAGCGACACATTCAGCGACACTTTCGCTTTCAGCGACACTTTCAGCgac
acattcgaattcttttgtatttttcatgctGAAGGAGAGAATTCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcatttgagggctatgc
atgttagccttcactgatgcaagttaccctttttcacggtagtGGATTGT
TAAATACAGCAGAGTTAGGCCCTGACATTTAagttagggcaaaagagggt
aTTTCTCAAACAAAAGCGGCATTCaatgcaagagttagattgaTGGTGTC
TATTGAATAGCAAACTAATCTAACATCTAATACAATAATAACTGGTTTGG
AGGTCAATACGGCAAAATATTGACCGCAGCCGAAGTacagaccgagcttg
cgaggtctgTGTGCAGGAtaaggtcaatattttacgtATTGACCAAGAAA
ACAGTTATATTATTGTGTTTATTAACTGGTGAACATTCTTTGTGCGTTTC
TGGGcaaaaaatgcattttccactcattttccatgattttttcgtttctt
ttttacCCAATATTTTCTTAGATTTATTCTGACGTCACTGCAACGTCAGC
TTTTACTTCAACCAGTTAATAATATCCAGTACAAACTGAATAAATTATCT
TGTACCTAGGTGCTGTGTTGTAAATGACAAATCTtaagttttcattaaaa
aaatttctactgGGTTTATTAGTTATTCATAAGACAAAgttctcccaaac
aactattttttgattggaaaaaataaaacatcGATCAATACGGTGATCAC
AAAATATTTGGCAGATTCATAAGTGTCTGtgattaaacaaaataaaataa
taattctaTTTCCTTGTTCTTCATGCTCGCCAATTCGAGAGtttttctct
ttgatcttttattgGTCTCTTTTGTTGATTGCTTGTGTGTCATCAATGAC
TCCCGAGTCATTTCTTGAAATGGAAACACACAAATTTTACCAAGCTGAAT
ATCTGTATATaatatagaccttttgctaatcaggatgTCATGTTAGGATA
GTTAAAGACTCAAGCATCAAAATAGTGATGAGAAAAAATTAGTGTACACT
TGTTATAGTTATGCCTTGAAATGTGTTTTTGTATTATTGCtgaagttttt
aattattttaaacaTTACATCTTTATAAGCAAAAGGGTCTATAAccaata
tatataaaaaagaaagccaATTATTGGTATACAAATTATAGAATGTCAAA
TAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAATgtgaaca
aaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGCCTAAAAAA
TGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCAAGTAAACG
AAGAGAGgtaattaaaaatgtttaaaatgttGTATCATTCCATTTTACTA
TAAAATAATAAGCAGACAGGCCATTTCTCATGTCCTTTTAGTGTCCGGTT
ATCGGACACTGCACTTCCCGAATTTGCAaagattttggtaaaaacagccc
cCAGCccactagggcaagatgggttacggggatgctccgctggtcagggt
accttttttaacctccacgagtcacaggtagggttgcaaaaacaccaaaa
tagaaaaatcagtccctcgtagggtgcctttttttggaaaatttggggga
aaagtagaaaatttgagaaaattttgNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GAAACAGCCTTTTTGGTGAAAAACACAAGAAAGGTGCCCTTTTTGACTAC
CACCAGGAGAcactgccctgcctttctaaaatattgcCTGGCAGATATTC
ATTCAGTGTATTTTCATAAtatcaacaaaacaaagaagaagTGTAGGTAC
CTGAAAAATATTTCTGTTTCTGGTCAGTTGGCACAtcaatatttctttgt
tttttttaaagtttgatttGCAAGGACGTTATTgtgttatattttttaaa
atataatgCAATGCAATTTTATAAATGATGCAAAAAATAATACCATACTT
TTTTTAACTTCTATTTATCATAATAGAAGACTGAGTGTTTAGAAAATGGA
TTTAGGGATAGAAATCTCAATACCATACCATTGCAACCAACGCGAGTTCC
AGTggacttgaaataaaaatattttttggtttaCAACTGTTGGGTGGTTG
AAATTGGCAATAAGATGACATAATCTAATAGGTGCCTGTCAAACTATCAT
TTaccatttttattccaaatatACATCCTTTTTGGATTTTCtatctgaaa
attattttcatgtcCCCTCAGCTACTCTTTAGGCTATCAAACTTTATTCA
GCTTTTACTAGACGCCTGGTAAATTATTAAAAGAGATTATCTACAAGTAC
AACAAAACAGTGTGCTTCCCGCAACGTAAACAGTGAACAGTGCCAAAAGT
GTccatatcatttgaaaatcattcAGCTGAATTTTTTCTTAGACAAGGCT
CTTTACTTTTTCAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTCGA
TGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAATAA
ACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatattttgg
ctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCGAA
ACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTCCCTT
AAACTCTTAAAATTaaagagattttttaaattataagATTGTATATAGGT
AATGTTCTGCACAATATATGaattaatattttgattttatgatGGGTGta
tattgttttgatttatttttgtactGTATAGAAAAAACTTTGACTTAATA
AATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcataaat
tttgtcCACTCTCTAAATTAAATCTTgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036482XLOC_036482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057867-exon-scaffold_30-1491911889:7487..7610TCONS_00057867-exon-scaffold_30-1491911889:7487..7610Clytia hemisphaericaexon
TCONS_00057867-exon-scaffold_30-1510915933:7487..7610TCONS_00057867-exon-scaffold_30-1510915933:7487..7610Clytia hemisphaericaexon
TCONS_00057867-exon-scaffold_30-1575043694:7487..7610TCONS_00057867-exon-scaffold_30-1575043694:7487..7610Clytia hemisphaericaexon
TCONS_00057867-exon-scaffold_30-1491911889:15401..15864TCONS_00057867-exon-scaffold_30-1491911889:15401..15864Clytia hemisphaericaexon
TCONS_00057867-exon-scaffold_30-1510915933:15401..15864TCONS_00057867-exon-scaffold_30-1510915933:15401..15864Clytia hemisphaericaexon
TCONS_00057867-exon-scaffold_30-1575043694:15401..15864TCONS_00057867-exon-scaffold_30-1575043694:15401..15864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:7487..15864 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.679768	4.79688	4.25949	0	0	0	0	2.08999	0	0	0.375782	0	0	0	0.216379	0	0	0	0	0	0	1.10217	2.07819	0	0	0	0	2.17779	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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