TCONS_00057813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057813
Unique NameTCONS_00057813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057813 ID=TCONS_00057813|Name=TCONS_00057813|organism=Clytia hemisphaerica|type=transcript|length=570bp
AAGCCTATGCCTTAGGCTTAGGATCACTGATTGAGACAAATAAAACAGGC
ATTTTGAAGGTTACCATTTTACAGCAGCCCGTTGTGCAGGCACTGAAAGA
AATATCTAGTCAATGGAAAGGTTAatggtgccaaaaagaagggccatgTG
TGAAATGTGGAAATATCACAACCTCGTCCCCTTTTACTGTTGTATCACAG
GCTTTATTACGTAACTGATAGTCACCAGagaatgaaaatggaaaatatCA
TGCTACGTATTCAGATTTTGCTCAAAATTAAACAAGTAAAATGATCATCT
CAAGTTGTTTACAGGTCCGCTAATCCCTATAGGAGCTTTATTCTAGACTG
ACGATGGTGGATGGAAATACTAAAATACTTAAAGCAATGGGGCTGGCTAG
GCTAGTTTTGAGATGATAGCAGCTTATGTCAAGATTTCAGAGGCAGCATC
TTTGATATGATATGATTGAGATGTGTTCACCCCATTAGAGTTTTTATGGA
GTGTAACGTCCAGGTATTTTGCTGTTTCAACACATTCGAGTGTCTCTCCA
TGGATTGTGTATGAGGTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_298:223841..224410

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057813 ID=TCONS_00057813|Name=TCONS_00057813|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_298:223841..224410 (Clytia hemisphaerica)
GTCACCTCATACACAATCCATGGAGAGACACTCGAATGTGTTGAAACAGC
AAAATACCTGGACGTTACACTCCATAAAAACTCTAATGGGGTGAACACAT
CTCAATCATATCATATCAAAGATGCTGCCTCTGAAATCTTGACATAAGCT
GCTATCATCTCAAAACTAGCCTAGCCAGCCCCATTGCTTTAAGTATTTTA
GTATTTCCATCCACCATCGTCAGTCTAGAATAAAGCTCCTATAGGGATTA
GCGGACCTGTAAACAACTTGAGATGATCATTTTACTTGTTTAATTTTGAG
CAAAATCTGAATACGTAGCATGatattttccattttcattctCTGGTGAC
TATCAGTTACGTAATAAAGCCTGTGATACAACAGTAAAAGGGGACGAGGT
TGTGATATTTCCACATTTCACAcatggcccttctttttggcaccatTAAC
CTTTCCATTGACTAGATATTTCTTTCAGTGCCTGCACAACGGGCTGCTGT
AAAATGGTAACCTTCAAAATGCCTGTTTTATTTGTCTCAATCAGTGATCC
TAAGCCTAAGGCATAGGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036443XLOC_036443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057813-exon-scaffold_298-1491911889:223841..224410TCONS_00057813-exon-scaffold_298-1491911889:223841..224410Clytia hemisphaericaexon
TCONS_00057813-exon-scaffold_298-1510915933:223841..224410TCONS_00057813-exon-scaffold_298-1510915933:223841..224410Clytia hemisphaericaexon
TCONS_00057813-exon-scaffold_298-1575043694:223841..224410TCONS_00057813-exon-scaffold_298-1575043694:223841..224410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:223841..224410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.491381	0.0958349	0.33382	0.326591	0.927718	0.104728	0.252699	0.354861	0	0.410322	0.0995671	0.45816	0.392163	0	0.334827	0.239547	0.0737756	0.453706	0.522349	0.21864	0.380076	0	0.225363	0.204888	0.42206	0.376678	0	0.143816	0.218158	0.111134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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