TCONS_00005716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005716
Unique NameTCONS_00005716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005716 ID=TCONS_00005716|Name=TCONS_00005716|organism=Clytia hemisphaerica|type=transcript|length=254bp
ttgacctctatgaaacaatcttacatctttacaatttatagatcttatct
ttccattcgtttgtcaattctagtttgaatttccctacGGACGGTGCATT
TACAACATTGGTTGCCAAACTGTTCCAAGTATCAATGCTCCAATAGTAAA
GTGAATTCGTTTGGTATCCTCTAATACCGTCTTCAGCGAAATTCCTCTTT
AATTCGAGATTGTGCTTACGTTGAGGTCGATTTCGAAGAACGAGTTTCTG
ACAT
Run BLAST on NCBI

transcript from alignment at sc0000054:808881..809134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005716 ID=TCONS_00005716|Name=TCONS_00005716|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0000054:808881..809134 (Clytia hemisphaerica)
ATGTCAGAAACTCGTTCTTCGAAATCGACCTCAACGTAAGCACAATCTCG
AATTAAAGAGGAATTTCGCTGAAGACGGTATTAGAGGATACCAAACGAAT
TCACTTTACTATTGGAGCATTGATACTTGGAACAGTTTGGCAACCAATGT
TGTAAATGCACCGTCCgtagggaaattcaaactagaattgacaaacgaat
ggaaagataagatctataaattgtaaagatgtaagattgtttcatagagg
tcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003241XLOC_003241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005716-exon-sc0000054-1491911889:808881..809134TCONS_00005716-exon-sc0000054-1491911889:808881..809134Clytia hemisphaericaexon
TCONS_00005716-exon-sc0000054-1510915933:808881..809134TCONS_00005716-exon-sc0000054-1510915933:808881..809134Clytia hemisphaericaexon
TCONS_00005716-exon-sc0000054-1575043694:808881..809134TCONS_00005716-exon-sc0000054-1575043694:808881..809134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:808881..809134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59974	4.96705	12.0025	8.69267	0	1.23956	2.32498	3.64201	0	1.88326e-05	0.729403	4.30034	3.35118	2.8649	4.12335	0.539055	1.86599	3.0303	1.89672	4.88534	8.3033	7.25472	2.41293	4.50287	5.72071	1.37972	7.01373	1.05356	2.7031	1.72221
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top