TCONS_00057803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057803
Unique NameTCONS_00057803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057803 ID=TCONS_00057803|Name=TCONS_00057803|organism=Clytia hemisphaerica|type=transcript|length=1119bp
TTCATGAACTGTTCTTTGATGAAAAGTTAAGGTCGTTTTCTGCCCAAAAC
TTTCAGcacattcttgacattcaaATGCCTTAATACCTTCATGGACTGTT
CTTTGGTGCCTCGCCAACGGCTTTATACCTTTATGAACAGCATCCTGGTG
TTTTTTAACTTCATATTGCATGGTAAAACCTTTACCACATTCATCGCACA
TGTGTGGTCTTATCTTCTTATGCACTCTGTCAACGTCTTTTTTCAGCTTC
TTCTTTGATTTAAATGTCTTACATATGAAAGCTTTTAAGTTCTCGTGAGT
ATGATCAGGAAGATCGTCCATACATGGCGAGTCACTGTCAGTGTGAATTA
ATTGATGTTTCATTAATGATCTCTTACAagcaaaagatttaccacacttt
TGACATTCAAAATGTTTATGTTTAATCTTCTTTTCAATGGACAATGCAGT
TTTCTTGGTAGTTATATGGTTTGCAGCTCCATGTAAGGATCGTTTGTGTT
CCTCAAGGTAAGTTTTGTGTGTAAAAGTTTCACCACATTCCTGACACCTG
AATGATTTCTTTTGATTGTGGACACGATTTCGATGTACATTAAGTTTAAC
TCTCAATgtaaaacatttaccacattctttacATTTGAAAAGCTTAATTC
TACAGTGGACCATTTGACGATGTTTTATTAAATCTCTTTTACGTTTAAGA
CTTATAAAACATTTGGAACACTTAAACTTCttgaacgcgtcatttttaga
CTGTTCTCTATACTTCAACCCTGGTGTTTTTTCGTTTGATTCtgttccat
cattgcattcgaTTTTAACCATTGGAATACTTTGTACTCTATCACAAACA
ACAATTCCTTCCTTCAAAGTCAATGATAATGTTTGTGGAAACTCATTTCC
TTCAGTTTCGATTACATCTTcttctatttttatttcaattatatCACTCA
TTATTATTTAGTTGCGTTATCTCTGAAAATAAAGtaagcaaaagaaaaat
atgaatcTGATACAGACAAATACAGTAGACGTAAAATTATTTGAAGCTTG
AAGTTCAAAGGGgccatccacatagtacgtacgcagtgaaggggggagag
ggggaaTTAGCAAAAGAGT
Run BLAST on NCBI

protein sequence of TCONS_00057803-protein

>TCONS_00057803-protein ID=TCONS_00057803-protein|Name=TCONS_00057803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MSDIIEIKIEEDVIETEGNEFPQTLSLTLKEGIVVCDRVQSIPMVKIECN
DGTESNEKTPGLKYREQSKNDAFKKFKCSKCFISLKRKRDLIKHRQMVHC
RIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLE
EHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKHQ
LIHTDSDSPCMDDLPDHTHENLKAFICKTFKSKKKLKKDVDRVHKKIRPH
MCDECGKGFTMQYEVKKHQDAVHKGIKPLARHQRTVHEGIKAFECQECAE
SFGQKTTLTFHQRTVHE
Run BLAST on NCBI

transcript from alignment at scaffold_298:71775..72893

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057803 ID=TCONS_00057803|Name=TCONS_00057803|organism=Clytia hemisphaerica|type=transcript|length=1119bp|location=Sequence derived from alignment at scaffold_298:71775..72893 (Clytia hemisphaerica)
ACTCTTTTGCTAAttccccctctccccccttcactgcgtacgtactatgt
ggatggcCCCTTTGAACTTCAAGCTTCAAATAATTTTACGTCTACTGTAT
TTGTCTGTATCAgattcatatttttcttttgcttaCTTTATTTTCAGAGA
TAACGCAACTAAATAATAATGAGTGatataattgaaataaaaatagaagA
AGATGTAATCGAAACTGAAGGAAATGAGTTTCCACAAACATTATCATTGA
CTTTGAAGGAAGGAATTGTTGTTTGTGATAGAGTACAAAGTATTCCAATG
GTTAAAAtcgaatgcaatgatggaacaGAATCAAACGAAAAAACACCAGG
GTTGAAGTATAGAGAACAGtctaaaaatgacgcgttcaaGAAGTTTAAGT
GTTCCAAATGTTTTATAAGTCTTAAACGTAAAAGAGATTTAATAAAACAT
CGTCAAATGGTCCACTGTAGAATTAAGCTTTTCAAATgtaaagaatgtgg
taaatgttttacATTGAGAGTTAAACTTAATGTACATCGAAATCGTGTCC
ACAATCAAAAGAAATCATTCAGGTGTCAGGAATGTGGTGAAACTTTTACA
CACAAAACTTACCTTGAGGAACACAAACGATCCTTACATGGAGCTGCAAA
CCATATAACTACCAAGAAAACTGCATTGTCCATTGAAAAGAAGATTAAAC
ATAAACATTTTGAATGTCAaaagtgtggtaaatcttttgctTGTAAGAGA
TCATTAATGAAACATCAATTAATTCACACTGACAGTGACTCGCCATGTAT
GGACGATCTTCCTGATCATACTCACGAGAACTTAAAAGCTTTCATATGTA
AGACATTTAAATCAAAGAAGAAGCTGAAAAAAGACGTTGACAGAGTGCAT
AAGAAGATAAGACCACACATGTGCGATGAATGTGGTAAAGGTTTTACCAT
GCAATATGAAGTTAAAAAACACCAGGATGCTGTTCATAAAGGTATAAAGC
CGTTGGCGAGGCACCAAAGAACAGTCCATGAAGGTATTAAGGCATttgaa
tgtcaagaatgtgCTGAAAGTTTTGGGCAGAAAACGACCTTAACTTTTCA
TCAAAGAACAGTTCATGAA

Coding sequence (CDS) from alignment at scaffold_298:71775..72893

>TCONS_00057803 ID=TCONS_00057803|Name=TCONS_00057803|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_298:71775..72893 (Clytia hemisphaerica)
ATGAGTGatataattgaaataaaaatagaagAAGATGTAATCGAAACTGA
AGGAAATGAGTTTCCACAAACATTATCATTGACTTTGAAGGAAGGAATTG
TTGTTTGTGATAGAGTACAAAGTATTCCAATGGTTAAAAtcgaatgcaat
gatggaacaGAATCAAACGAAAAAACACCAGGGTTGAAGTATAGAGAACA
GtctaaaaatgacgcgttcaaGAAGTTTAAGTGTTCCAAATGTTTTATAA
GTCTTAAACGTAAAAGAGATTTAATAAAACATCGTCAAATGGTCCACTGT
AGAATTAAGCTTTTCAAATgtaaagaatgtggtaaatgttttacATTGAG
AGTTAAACTTAATGTACATCGAAATCGTGTCCACAATCAAAAGAAATCAT
TCAGGTGTCAGGAATGTGGTGAAACTTTTACACACAAAACTTACCTTGAG
GAACACAAACGATCCTTACATGGAGCTGCAAACCATATAACTACCAAGAA
AACTGCATTGTCCATTGAAAAGAAGATTAAACATAAACATTTTGAATGTC
AaaagtgtggtaaatcttttgctTGTAAGAGATCATTAATGAAACATCAA
TTAATTCACACTGACAGTGACTCGCCATGTATGGACGATCTTCCTGATCA
TACTCACGAGAACTTAAAAGCTTTCATATGTAAGACATTTAAATCAAAGA
AGAAGCTGAAAAAAGACGTTGACAGAGTGCATAAGAAGATAAGACCACAC
ATGTGCGATGAATGTGGTAAAGGTTTTACCATGCAATATGAAGTTAAAAA
ACACCAGGATGCTGTTCATAAAGGTATAAAGCCGTTGGCGAGGCACCAAA
GAACAGTCCATGAAGGTATTAAGGCATttgaatgtcaagaatgtgCTGAA
AGTTTTGGGCAGAAAACGACCTTAACTTTTCATCAAAGAACAGTTCATGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036433XLOC_036433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057803-exon-scaffold_298-1491911889:71775..72893TCONS_00057803-exon-scaffold_298-1491911889:71775..72893Clytia hemisphaericaexon
TCONS_00057803-exon-scaffold_298-1510915933:71775..72893TCONS_00057803-exon-scaffold_298-1510915933:71775..72893Clytia hemisphaericaexon
TCONS_00057803-exon-scaffold_298-1575043694:71775..72893TCONS_00057803-exon-scaffold_298-1575043694:71775..72893Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057803-proteinTCONS_00057803-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:71775..72893 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.85962	7.88631	6.01739	4.64731	0.967677	1.03213	1.57669	1.75601	1.90323	0.572648	2.66191	0.877151	1.04796	0.62267	1.24151	1.64779	1.86344	1.70204	0.424503	0.601555	1.59131	1.17094	12.1057	8.62339	1.11015	0.989389	3.19908	2.3578	7.96914	9.08301
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00057803 vs. Swiss-Prot (Human)
Match: ZN658 (Zinc finger protein 658 OS=Homo sapiens GN=ZNF658 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.561e-23
Identity = 85/261 (32.57%), Postives = 125/261 (47.89%), Query Frame = -1 
Query:   13 IKHRQMVHCRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANH-------ITTKKTALSIEKKI--KHKHFECQKCGKSFACKRSLMKHQLIHTDSD----SPCMDDLPD----------HTHEN-LXXXXXXXXXXXXXXXXXXXXXXXKIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKP---------------LARHQRTVHEGIKAFECQECAESFGQKTTLTFHQR 678
            ++  Q +H   KL++C ECGK F  + +L+ HR R+H  +K + C +CG+TF+ K+YL  H+R   G   +           K AL + ++I    K +EC +CGK+F+ +  L  HQ IHT       + C     D          HT E   +   C    SK    +   R     +P+ C ECGK F+ +  V  HQ  VH G KP               L  HQR +H G K++EC +C ++F QK+ L+ HQR
Sbjct:  729 LRAHQNIHTGEKLYECSECGKTFFQKTRLSTHR-RIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNQCGKTFSQRTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQ-RVHTGEKPYECNVCGKPFAHNSTLRVHQR-IHTGEKSYECNDCGKTFSQKSHLSAHQR 986

HSP 2 Score: 86.2705 bits (212), Expect = 3.140e-18
Identity = 69/227 (30.40%), Postives = 98/227 (43.17%), Query Frame = -1 
Query:   13 KLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKHQLIHT-DSDSPCMDDLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXKIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKP---------------LARHQRTVHEGIKAFECQECAESFGQKTTLTFHQR 645
            K ++C ECGK F+    L  H+ R+H  +K + C EC +TF+HKT+L  H+R   G                    K +EC  CGKSF    +L  HQ IHT +    C D      H +      +    +              +P+ C+ECG+ F     +K HQ  +H G KP               L  HQR +H G K +EC +C ++F   + L  HQR
Sbjct:  516 KPYECIECGKTFSKTSHLRAHQ-RIHTGEKPYECVECEKTFSHKTHLSVHQRVHTGE-------------------KPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHRIHTGE--------------KPYECNECGRSFAHISVLKAHQ-RIHTGEKPYECNECGRSFTYNSALRAHQR-IHTGRKPYECSDCEKTFAHNSALKIHQR 706

HSP 3 Score: 83.1889 bits (204), Expect = 4.029e-17
Identity = 64/234 (27.35%), Postives = 100/234 (42.74%), Query Frame = -1 
Query:    4 QMVHCRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANH-------ITTKKTALSIEKKI--KHKHFECQKCGKSFACKRSLMKHQLIHTDSDS----PCMDDLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXKIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPLARHQRTVHEGIKAFECQECAESFGQKTTLTFHQRTVH 666
            Q +H   K ++C ECGK F     L  H +R+H  +K + C +CG+TF+  ++L  H R+  G   +         ++K+ +S  +++    K +EC  CGK FA   +L  HQ IHT   S     C       +H +    I                     +P+ C+ECGK F     ++ HQ                +H G K +EC EC ++F +K  L  H   +H
Sbjct:  845 QRIHTGEKPYECNECGKTFADNSALRAH-HRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGE-----------------KPYECNECGKAFAQNSTLRVHQ---------------RIHTGEKPYECDECGKTFVRKAALRVHHTRMH 1045
The following BLAST results are available for this feature:
BLAST of TCONS_00057803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6582.561e-2332.57Zinc finger protein 658 OS=Homo sapiens GN=ZNF658 ... [more]
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