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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057600 ID=TCONS_00057600|Name=TCONS_00057600|organism=Clytia hemisphaerica|type=transcript|length=2128bp
AATACATCCTCCCATCGCCACATATATCCCTTCCATCCATATGTGTGGAT
ATGGTGGCACCTTCCTACTTGTTCCTCGACACTCAAGTTACTTTTTGACA
TCACTTTTTGACATCACTTTTGGTTTATTCAACCACTTTTCAACCTGGTC
CTCCACATCTAAGTTAGCTTTTGACATCACTTTTGTTTACTCAGCCACCT
TTCAACTTAATCCTCTAAATCCAAGCTAGTTTTTGACATCACTTTCTGTT
TATTCAGCCACCATGCAAAGACCAAACAACCATCACCCAAGAAGATATCA
TTTCTCAAGCCTCCATAACCTATTTCCACACTCTCATCACTGGCATCACC
ATAAACCGGAAAATTCaatcagaaaatcaatcatCCAGGAACACACCAAC
ACCTACAACAACACCCTAATACACAACCTTTCCACCTACCAACTCTCAAA
ATATGAAATCGACGTCTTGGCCAAAGGACTTAACTTCTCACCCAATATTC
CATCATTCAAAAGACAGTCAAATCCAACAGAGGTTATTAAAGActtgaaa
agaagaattgaCACCTCCCTATACTTCAACCAACTTAACCCAATGAACCA
AATCAATAACGCCCACCAAGAAAACCAAGACCAGCAACCACCCGCAAAAC
TACCAAAAAAAGGTCCTACCGCATGGAATCCCCCTCCCAGCAACCACCCA
ACTGTCAACAACTTTTTCCAACAACTCGATAATACGCCACTGGTCCCATT
CGAACAAGACCTCCAAACTGAGCACTACCATTTCCTcccatcttttttta
aattaaaaaataaccgGGACCTCATAATAAAGAAAGCCGACAAAAGTGGT
GGCATTGTCGTCATGGATAAAGATCAATACATCAACAAGATCCTTGAAGA
GCACCTCAACGACAGAAACACGTATCGTATATCTGAATTCGACCCAACAC
CCCACATCACACATGATACCAAAATACTTATCAACTTCCTTCATAGTAAA
CATCACATCAACGACCACACtgctaaatatctcaaacctcATGATCCACC
ATGCACACCCATATTCTATGGCTTACCAAAAATACATAAGGTTAACAACC
CACTTCGCCCATTGTCTCTGGCTTTGATGGTCCCACCGACAACATTTCCC
GCTACATTGCCCATCATCTACAGCCACTTGTTGAACACCTACACAcataa
aaaacacaaaacataTGCTCACTATCCTCGATTCATTCGGCCCACCACCT
TCCAATATTACCATGGTTACTGCAGACGTCATCTCGTTATATACCAACAT
ACCTCATGGGGATGGACTGGAAGCCACCTCCCGACATTACAAACAATCTC
CGCACCTGCTTCACTCAAATGCACCTCCCCCTTTTGCCATCAAATACTAC
TCGAACACGTCTTGAAACACAGCAATTTCCGGTTTTTGAATTCCCACTAC
ATACAAAACAATGGTACTAGCATTGGAGGACGATACGCACCCCAATATGC
AAATTTATTCATGGCTGATGTTGAAGCAGCAATACTCATGGAGTTCCAAC
AATACATCCCACTCTGGAAACGTTTTATTGATgatgtattttttcttttc
attgggTCAGATGAAGACTTAAACCGTCTCAAACAATTCATGAACATAAT
CCATGACACAATAAAATTCACATTTGAACATTCCAAAGAAAGAATCAACT
TCCTAGACCTCTCAATTCTTTCTCTAACCATCAGTTCCACACTTCTATAT
ACAGAAAACCCACGGACGGCTCCCAATTCCTTCACTTTCAATCAAATCAC
CCCCTACATGTCAAAGAAGGAATTATATACTCACAAGGACTACGATACAA
CCTCATAATCAGTGATGACCGTAATCTAACAAAAGAACTGAATTTCCTTA
CCAAAGTTTTTCTGGCTCATGGATACCACTATCCCTCATTAACCGCAACA
TTGCAAAGGCCCTGGCAATACCCCGTCACACTTTGCTCTATGGTGGCAAC
CGAAATCAAGGACCTCGAGCACCCCTTCTCCCTCTCATTCTACACAGAAA
CAAAGATGAGTACATCAGATCTACCATCAATGAATATTGGTCCATCATAG
AAGAGGATGAGGAATTGTCAAATGCCAT Run BLAST on NCBI protein sequence of TCONS_00057600-protein >TCONS_00057600-protein ID=TCONS_00057600-protein|Name=TCONS_00057600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MQRPNNHHPRRYHFSSLHNLFPHSHHWHHHKPENSIRKSIIQEHTNTYNN
TLIHNLSTYQLSKYEIDVLAKGLNFSPNIPSFKRQSNPTEVIKDLKRRID
TSLYFNQLNPMNQINNAHQENQDQQPPAKLPKKGPTAWNPPPSNHPTVNN
FFQQLDNTPLVPFEQDLQTEHYHFLPSFFKLKNNRDLIIKKADKSGGIVV
MDKDQYINKILEEHLNDRNTYRISEFDPTPHITHDTKILINFLHSKHHIN
DHTAKYLKPHDPPCTPIFYGLPKIHKVNNPLRPLSLALMVPPTTFPATLP
IIYSHLLNTYTHKKHKTYAHYPRFIRPTTFQYYHGYCRRHLVIYQHTSWG
WTGSHLPTLQTISAPASLKCTSPFCHQILLEHVLKHSNFRFLNSHYIQNN
GTSIGGRYAPQYANLFMADVEAAILMEFQQYIPLWKRFIDDVFFLFIGSD
EDLNRLKQFMNIIHDTIKFTFEHSKERINFLDLSILSLTISSTLLYTENP
RTAPNSFTFNQITPYMSKKELYTHKDYDTTS Run BLAST on NCBI transcript from alignment at scaffold_293:241122..243249 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057600 ID=TCONS_00057600|Name=TCONS_00057600|organism=Clytia hemisphaerica|type=transcript|length=2128bp|location=Sequence derived from alignment at scaffold_293:241122..243249 (Clytia hemisphaerica)
ATGGCATTTGACAATTCCTCATCCTCTTCTATGATGGACCAATATTCATT
GATGGTAGATCTGATGTACTCATCTTTGTTTCTGTGTAGAATGAGAGGGA
GAAGGGGTGCTCGAGGTCCTTGATTTCGGTTGCCACCATAGAGCAAAGTG
TGACGGGGTATTGCCAGGGCCTTTGCAATGTTGCGGTTAATGAGGGATAG
TGGTATCCATGAGCCAGAAAAACTTTGGTAAGGAAATTCAGTTCTTTTGT
TAGATTACGGTCATCACTGATTATGAGGTTGTATCGTAGTCCTTGTGAGT
ATATAATTCCTTCTTTGACATGTAGGGGGTGATTTGATTGAAAGTGAAGG
AATTGGGAGCCGTCCGTGGGTTTTCTGTATATAGAAGTGTGGAACTGATG
GTTAGAGAAAGAATTGAGAGGTCTAGGAAGTTGATTCTTTCTTTGGAATG
TTCAAATGTGAATTTTATTGTGTCATGGATTATGTTCATGAATTGTTTGA
GACGGTTTAAGTCTTCATCTGAcccaatgaaaagaaaaaatacatcATCA
ATAAAACGTTTCCAGAGTGGGATGTATTGTTGGAACTCCATGAGTATTGC
TGCTTCAACATCAGCCATGAATAAATTTGCATATTGGGGTGCGTATCGTC
CTCCAATGCTAGTACCATTGTTTTGTATGTAGTGGGAATTCAAAAACCGG
AAATTGCTGTGTTTCAAGACGTGTTCGAGTAGTATTTGATGGCAAAAGGG
GGAGGTGCATTTGAGTGAAGCAGGTGCGGAGATTGTTTGTAATGTCGGGA
GGTGGCTTCCAGTCCATCCCCATGAGGTATGTTGGTATATAACGAGATGA
CGTCTGCAGTAACCATGGTAATATTGGAAGGTGGTGGGCCGAATGAATCG
AGGATAGTGAGCAtatgttttgtgttttttatgTGTGTAGGTGTTCAACA
AGTGGCTGTAGATGATGGGCAATGTAGCGGGAAATGTTGTCGGTGGGACC
ATCAAAGCCAGAGACAATGGGCGAAGTGGGTTGTTAACCTTATGTATTTT
TGGTAAGCCATAGAATATGGGTGTGCATGGTGGATCATgaggtttgagat
atttagcaGTGTGGTCGTTGATGTGATGTTTACTATGAAGGAAGTTGATA
AGTATTTTGGTATCATGTGTGATGTGGGGTGTTGGGTCGAATTCAGATAT
ACGATACGTGTTTCTGTCGTTGAGGTGCTCTTCAAGGATCTTGTTGATGT
ATTGATCTTTATCCATGACGACAATGCCACCACTTTTGTCGGCTTTCTTT
ATTATGAGGTCCcggttattttttaatttaaaaaaagatgggAGGAAATG
GTAGTGCTCAGTTTGGAGGTCTTGTTCGAATGGGACCAGTGGCGTATTAT
CGAGTTGTTGGAAAAAGTTGTTGACAGTTGGGTGGTTGCTGGGAGGGGGA
TTCCATGCGGTAGGACCTTTTTTTGGTAGTTTTGCGGGTGGTTGCTGGTC
TTGGTTTTCTTGGTGGGCGTTATTGATTTGGTTCATTGGGTTAAGTTGGT
TGAAGTATAGGGAGGTGtcaattcttcttttcaagTCTTTAATAACCTCT
GTTGGATTTGACTGTCTTTTGAATGATGGAATATTGGGTGAGAAGTTAAG
TCCTTTGGCCAAGACGTCGATTTCATATTTTGAGAGTTGGTAGGTGGAAA
GGTTGTGTATTAGGGTGTTGTTGTAGGTGTTGGTGTGTTCCTGGatgatt
gattttctgattGAATTTTCCGGTTTATGGTGATGCCAGTGATGAGAGTG
TGGAAATAGGTTATGGAGGCTTGAGAAATGATATCTTCTTGGGTGATGGT
TGTTTGGTCTTTGCATGGTGGCTGAATAAACAGAAAGTGATGTCAAAAAC
TAGCTTGGATTTAGAGGATTAAGTTGAAAGGTGGCTGAGTAAACAAAAGT
GATGTCAAAAGCTAACTTAGATGTGGAGGACCAGGTTGAAAAGTGGTTGA
ATAAACCAAAAGTGATGTCAAAAAGTGATGTCAAAAAGTAACTTGAGTGT
CGAGGAACAAGTAGGAAGGTGCCACCATATCCACACATATGGATGGAAGG
GATATATGTGGCGATGGGAGGATGTATT Coding sequence (CDS) from alignment at scaffold_293:241122..243249 >TCONS_00057600 ID=TCONS_00057600|Name=TCONS_00057600|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_293:241122..243249 (Clytia hemisphaerica)
TTATGAGGTTGTATCGTAGTCCTTGTGAGTATATAATTCCTTCTTTGACA
TGTAGGGGGTGATTTGATTGAAAGTGAAGGAATTGGGAGCCGTCCGTGGG
TTTTCTGTATATAGAAGTGTGGAACTGATGGTTAGAGAAAGAATTGAGAG
GTCTAGGAAGTTGATTCTTTCTTTGGAATGTTCAAATGTGAATTTTATTG
TGTCATGGATTATGTTCATGAATTGTTTGAGACGGTTTAAGTCTTCATCT
GAcccaatgaaaagaaaaaatacatcATCAATAAAACGTTTCCAGAGTGG
GATGTATTGTTGGAACTCCATGAGTATTGCTGCTTCAACATCAGCCATGA
ATAAATTTGCATATTGGGGTGCGTATCGTCCTCCAATGCTAGTACCATTG
TTTTGTATGTAGTGGGAATTCAAAAACCGGAAATTGCTGTGTTTCAAGAC
GTGTTCGAGTAGTATTTGATGGCAAAAGGGGGAGGTGCATTTGAGTGAAG
CAGGTGCGGAGATTGTTTGTAATGTCGGGAGGTGGCTTCCAGTCCATCCC
CATGAGGTATGTTGGTATATAACGAGATGACGTCTGCAGTAACCATGGTA
ATATTGGAAGGTGGTGGGCCGAATGAATCGAGGATAGTGAGCAtatgttt
tgtgttttttatgTGTGTAGGTGTTCAACAAGTGGCTGTAGATGATGGGC
AATGTAGCGGGAAATGTTGTCGGTGGGACCATCAAAGCCAGAGACAATGG
GCGAAGTGGGTTGTTAACCTTATGTATTTTTGGTAAGCCATAGAATATGG
GTGTGCATGGTGGATCATgaggtttgagatatttagcaGTGTGGTCGTTG
ATGTGATGTTTACTATGAAGGAAGTTGATAAGTATTTTGGTATCATGTGT
GATGTGGGGTGTTGGGTCGAATTCAGATATACGATACGTGTTTCTGTCGT
TGAGGTGCTCTTCAAGGATCTTGTTGATGTATTGATCTTTATCCATGACG
ACAATGCCACCACTTTTGTCGGCTTTCTTTATTATGAGGTCCcggttatt
ttttaatttaaaaaaagatgggAGGAAATGGTAGTGCTCAGTTTGGAGGT
CTTGTTCGAATGGGACCAGTGGCGTATTATCGAGTTGTTGGAAAAAGTTG
TTGACAGTTGGGTGGTTGCTGGGAGGGGGATTCCATGCGGTAGGACCTTT
TTTTGGTAGTTTTGCGGGTGGTTGCTGGTCTTGGTTTTCTTGGTGGGCGT
TATTGATTTGGTTCATTGGGTTAAGTTGGTTGAAGTATAGGGAGGTGtca
attcttcttttcaagTCTTTAATAACCTCTGTTGGATTTGACTGTCTTTT
GAATGATGGAATATTGGGTGAGAAGTTAAGTCCTTTGGCCAAGACGTCGA
TTTCATATTTTGAGAGTTGGTAGGTGGAAAGGTTGTGTATTAGGGTGTTG
TTGTAGGTGTTGGTGTGTTCCTGGatgattgattttctgattGAATTTTC
CGGTTTATGGTGATGCCAGTGATGAGAGTGTGGAAATAGGTTATGGAGGC
TTGAGAAATGATATCTTCTTGGGTGATGGTTGTTTGGTCTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057600-exon-scaffold_293-1491911889:241122..243249 | TCONS_00057600-exon-scaffold_293-1491911889:241122..243249 | Clytia hemisphaerica | exon |
| TCONS_00057600-exon-scaffold_293-1510915933:241122..243249 | TCONS_00057600-exon-scaffold_293-1510915933:241122..243249 | Clytia hemisphaerica | exon |
| TCONS_00057600-exon-scaffold_293-1575043694:241122..243249 | TCONS_00057600-exon-scaffold_293-1575043694:241122..243249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_293 | supercontig | scaffold_293:241122..243249 . |
Blast
The following BLAST results are available for this feature:
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