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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057562 ID=TCONS_00057562|Name=TCONS_00057562|organism=Clytia hemisphaerica|type=transcript|length=765bp
TCCGTCGTTCGACCAACCATTTTCTGTAATATCTCCTTGTTCTAAACAAC
TTATGTTAATGATGATTTCCAAAGTTTGCTAACGTAGTTTGCCCTCTTCG
AGTGAAGAATCAAAACTGACTGACACGGAGGAAGCATGGCCATATCGATA
ATTTTTCCGCTTTTGGTGTActtcttttcaaacatttttgctCTCATAAC
GTTGACTGATGTTTCTTTAGGATAACCATAAAGGGCGCAGACGAATCGTT
CCAAATCATTTTGAGTTTCTTCTTCCAAATCCCATGATTCTCCCAAGCGG
CGAAAAGCTTCCACGAAATTTctattcttcttcattttattGAAGCAGGT
TGATTTTCCTtttttgaagaATGATGATATGTAATCGTTGCCGGTAAAGG
CGTGGAAACCAATCAAAGATGTTTTGTACTTGACAGCATCCTTGCCAAGG
TTGCTTATCCAAAACCCTTTCCGTGTCTTCCCTCTGCTGTAGTCAAGATA
GATTTTGGTTGGACTTAGAAGACATGCTGCAAGAACAAAGATGTCGGTGT
CTGCAGATGGAGATCTTAAGATTACATTCGCTTCGGGATTTTCTTTCAGG
ACATAACTGCAGTGAAGGATGACCTTTGTCTCAGCTTCCTCATGATTAGA
TGACAAATCCTCTGAAATAGTGACGCCCGTTCGACTAAGACAATACGTAA
CATCTTCTTGAGAAAAATAGACCTTCGAACAATTTGTGGTCTGCAATACT
CTCTGATAATTGCTT Run BLAST on NCBI protein sequence of TCONS_00057562-protein >TCONS_00057562-protein ID=TCONS_00057562-protein|Name=TCONS_00057562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
SNYQRVLQTTNCSKVYFSQEDVTYCLSRTGVTISEDLSSNHEEAETKVIL
HCSYVLKENPEANVILRSPSADTDIFVLAACLLSPTKIYLDYSRGKTRKG
FWISNLGKDAVKYKTSLIGFHAFTGNDYISSFFKKGKSTCFNKMKKNRNF
VEAFRRLGESWDLEEETQNDLERFVCALYGYPKETSVNVMRAKMFEKKYT
KSGKIIDMAMLPPCQSVLILHSKRANYVSKLWKSSLT Run BLAST on NCBI transcript from alignment at scaffold_292:153612..154376 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057562 ID=TCONS_00057562|Name=TCONS_00057562|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at scaffold_292:153612..154376 (Clytia hemisphaerica)
AAGCAATTATCAGAGAGTATTGCAGACCACAAATTGTTCGAAGGTCTATT
TTTCTCAAGAAGATGTTACGTATTGTCTTAGTCGAACGGGCGTCACTATT
TCAGAGGATTTGTCATCTAATCATGAGGAAGCTGAGACAAAGGTCATCCT
TCACTGCAGTTATGTCCTGAAAGAAAATCCCGAAGCGAATGTAATCTTAA
GATCTCCATCTGCAGACACCGACATCTTTGTTCTTGCAGCATGTCTTCTA
AGTCCAACCAAAATCTATCTTGACTACAGCAGAGGGAAGACACGGAAAGG
GTTTTGGATAAGCAACCTTGGCAAGGATGCTGTCAAGTACAAAACATCTT
TGATTGGTTTCCACGCCTTTACCGGCAACGATTACATATCATCATtcttc
aaaaaAGGAAAATCAACCTGCTTCaataaaatgaagaagaatagAAATTT
CGTGGAAGCTTTTCGCCGCTTGGGAGAATCATGGGATTTGGAAGAAGAAA
CTCAAAATGATTTGGAACGATTCGTCTGCGCCCTTTATGGTTATCCTAAA
GAAACATCAGTCAACGTTATGAGagcaaaaatgtttgaaaagaagTACAC
CAAAAGCGGAAAAATTATCGATATGGCCATGCTTCCTCCGTGTCAGTCAG
TTTTGATTCTTCACTCGAAGAGGGCAAACTACGTTAGCAAACTTTGGAAA
TCATCATTAACATAAGTTGTTTAGAACAAGGAGATATTACAGAAAATGGT
TGGTCGAACGACGGA Coding sequence (CDS) from alignment at scaffold_292:153612..154376 >TCONS_00057562 ID=TCONS_00057562|Name=TCONS_00057562|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_292:153612..154376 (Clytia hemisphaerica)
AGCAATTATCAGAGAGTATTGCAGACCACAAATTGTTCGAAGGTCTATTT
TTCTCAAGAAGATGTTACGTATTGTCTTAGTCGAACGGGCGTCACTATTT
CAGAGGATTTGTCATCTAATCATGAGGAAGCTGAGACAAAGGTCATCCTT
CACTGCAGTTATGTCCTGAAAGAAAATCCCGAAGCGAATGTAATCTTAAG
ATCTCCATCTGCAGACACCGACATCTTTGTTCTTGCAGCATGTCTTCTAA
GTCCAACCAAAATCTATCTTGACTACAGCAGAGGGAAGACACGGAAAGGG
TTTTGGATAAGCAACCTTGGCAAGGATGCTGTCAAGTACAAAACATCTTT
GATTGGTTTCCACGCCTTTACCGGCAACGATTACATATCATCATtcttca
aaaaAGGAAAATCAACCTGCTTCaataaaatgaagaagaatagAAATTTC
GTGGAAGCTTTTCGCCGCTTGGGAGAATCATGGGATTTGGAAGAAGAAAC
TCAAAATGATTTGGAACGATTCGTCTGCGCCCTTTATGGTTATCCTAAAG
AAACATCAGTCAACGTTATGAGagcaaaaatgtttgaaaagaagTACACC
AAAAGCGGAAAAATTATCGATATGGCCATGCTTCCTCCGTGTCAGTCAGT
TTTGATTCTTCACTCGAAGAGGGCAAACTACGTTAGCAAACTTTGGAAAT
CATCATTAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057562-exon-scaffold_292-1491911889:153612..154376 | TCONS_00057562-exon-scaffold_292-1491911889:153612..154376 | Clytia hemisphaerica | exon |
| TCONS_00057562-exon-scaffold_292-1510915933:153612..154376 | TCONS_00057562-exon-scaffold_292-1510915933:153612..154376 | Clytia hemisphaerica | exon |
| TCONS_00057562-exon-scaffold_292-1575043694:153612..154376 | TCONS_00057562-exon-scaffold_292-1575043694:153612..154376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_292 | supercontig | scaffold_292:153612..154376 . |
Blast
The following BLAST results are available for this feature:
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