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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057519 ID=TCONS_00057519|Name=TCONS_00057519|organism=Clytia hemisphaerica|type=transcript|length=2516bpRun BLAST on NCBI protein sequence of TCONS_00057519-protein >TCONS_00057519-protein ID=TCONS_00057519-protein|Name=TCONS_00057519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp MASKSVEIISPNGRRHKIKTSPSMTVMDILNQACGKFGCDPSLYDLKHLKRun BLAST on NCBI transcript from alignment at scaffold_291:200002..233182+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057519 ID=TCONS_00057519|Name=TCONS_00057519|organism=Clytia hemisphaerica|type=transcript|length=33181bp|location=Sequence derived from alignment at scaffold_291:200002..233182+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_291:200002..233182+ >TCONS_00057519 ID=TCONS_00057519|Name=TCONS_00057519|organism=Clytia hemisphaerica|type=CDS|length=31698bp|location=Sequence derived from alignment at scaffold_291:200002..233182+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057519 vs. Swiss-Prot (Human)
Match: ASPC1 (Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.947e-24 Identity = 73/214 (34.11%), Postives = 109/214 (50.93%), Query Frame = 1
Query: 1357 MYDDFYDVTVEDLGKRMQVLTSAKK---ESTLMTKAMRERRDLERAAMFEKVVVRFLLPDRKHAIQAFFRPLETVKSLREFLRPYLHKSIKKFDLFTTPPKNVLKDQKSTLYQAKLCPASRVYVSLEKTDHV-LGESYLDCIKSVEEAQNLLTLHLNKNKSIENTTLQDGKHIPDKIPNSTEA--RNTITAAQNKKYNAKP-----KDAPKWFK 1965
+ D+F+++TV+D+ +R+ L S +K E+ L+TKA RE + E+ + KV +R L PDR + +Q FFRP ETV LR+F+R +L F LF TPPK VL D TL+QA L PA+ V++ E+ V L L+ S A L+ ++++ + PD P S A + + A+P PKW K
Sbjct: 340 LPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDR-YVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAGVYLEPGLLEHAISPSAADVLVARYMSRAAGSPSPL-----PAPDPAPKSEPAAEEGALVPPEPIPGTAQPVKRSLGKVPKWLK 547 HSP 2 Score: 106.301 bits (264), Expect = 9.356e-24 Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 1
Query: 238 IISPNGRRHKIKTSPSMTVMDILNQACGKFGCDPSLYDLKHLKKVLNTSSIIRYLNISNNAKLEIVALSIPRKTDAKPT-VALQLEGGQRLTEDFDSKTTLYDVIKCFQDKIENGDLLRPG---LTIVYMRNEYKGTPVLRSTTLQGIGITGARVALRLFYR 711
+++PNGRRH +K +PS ++ +L C + +P YDLK + VL+ S R+ N+ NNAKLE+V S R+ +ALQL+ G RL + F S TL++++ F E L PG VY R+E G LR TTLQ +G+TG +R +
Sbjct: 14 VLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPCEYDLKFQRSVLDLSLQWRFANLPNNAKLEMVPASRSREGPENMVRIALQLDDGSRLQDSFCSGQTLWELLSHFPQIREC--LQHPGGATPVCVYTRDEVTGEAALRGTTLQSLGLTGGSATIRFVMK 173 The following BLAST results are available for this feature:
BLAST of TCONS_00057519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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