TCONS_00057504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057504
Unique NameTCONS_00057504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057504 ID=TCONS_00057504|Name=TCONS_00057504|organism=Clytia hemisphaerica|type=transcript|length=382bp
attcataattGTTATAAATTAACCGGTCAATGAGCTAAGAAACGATTGTC
AAGTTGTTTTGGGATTTGATATGATGGGACGCAAGTTCTTTGAGAAAGAT
GTCAGATTTAatatgattgttttgattttgacacgtACGTGGTATACAAG
CCTGGTACGATTGAATATTTGTATCTGCtttctcaaagttgaaatgACAA
ATTGGTGTTGTTACTTGTGACTTAAAGAATAAAGGTAGTGATCCAGTTTT
TGCTTTTCGTCTTTATAGCCTTTTCGTCTTTTGCTTTAATAAGATCAAAT
TAAATGCTTGTTATAGTGGATTTTTGACTGGATTGATGTGTCATTTTGca
tgtgttttgatttttgagatgtTGTCATAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_289:423749..424130

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057504 ID=TCONS_00057504|Name=TCONS_00057504|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at scaffold_289:423749..424130 (Clytia hemisphaerica)
GTTTATGACAacatctcaaaaatcaaaacacatgCAAAATGACACATCAA
TCCAGTCAAAAATCCACTATAACAAGCATTTAATTTGATCTTATTAAAGC
AAAAGACGAAAAGGCTATAAAGACGAAAAGCAAAAACTGGATCACTACCT
TTATTCTTTAAGTCACAAGTAACAACACCAATTTGTcatttcaactttga
gaaaGCAGATACAAATATTCAATCGTACCAGGCTTGTATACCACGTacgt
gtcaaaatcaaaacaatcatatTAAATCTGACATCTTTCTCAAAGAACTT
GCGTCCCATCATATCAAATCCCAAAACAACTTGACAATCGTTTCTTAGCT
CATTGACCGGTTAATTTATAACaattatgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036245XLOC_036245Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057504-exon-scaffold_289-1491911889:423749..424130TCONS_00057504-exon-scaffold_289-1491911889:423749..424130Clytia hemisphaericaexon
TCONS_00057504-exon-scaffold_289-1510915933:423749..424130TCONS_00057504-exon-scaffold_289-1510915933:423749..424130Clytia hemisphaericaexon
TCONS_00057504-exon-scaffold_289-1575043694:423749..424130TCONS_00057504-exon-scaffold_289-1575043694:423749..424130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:423749..424130 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60816	3.94151	2.22551	1.58413	6.66832	3.07943	6.69946	7.87888	4.05012	1.78199	1.68072	2.5656	1.37709	1.78701	0.156246	0.418297	1.02422	0.685073	0.376223	0.228119	0.495037	0	0.399702	0	7.87508	8.47241	0.780539	1.05318	1.59534	0.575205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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