TCONS_00057374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057374
Unique NameTCONS_00057374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057374 ID=TCONS_00057374|Name=TCONS_00057374|organism=Clytia hemisphaerica|type=transcript|length=2529bp
atttttcttcatgttcattcattcttaaattttctaGACAActaacaaag
aaaataaaaagtagaATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGATGGGGCAAGCACCTCAGCAGCAG
CCTTCGACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCAAAT
GCCGGATGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCACCAC
CGCCGCAAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAAATT
GGTGATATTTTACACCAAATCATGAATATCACGGACCAATCACTGGACGA
AGCTCAAGCCAGGAAACAAGCTTTGAATTGCCACCGCTTGAAGCCTGCAT
TGTTCACAGTGTTGTGTGAAATTAAAGAAAAGACAGTTTTAAACATGCGC
AGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGATTGGATAA
CATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGGAAGTACGG
CCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATGTGGATTAC
AAAATGAAGCTCTCGCaaatccgacaaatttaccACACCGAGCTCGAGAA
ATATGAACAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTTGTTAC
GTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAACGTATG
GTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTGAAGCA
AAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGATGCAA
GACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGAGATTTTGAACGAA
TATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTGAAGAAGCCAAAGA
GGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAAGTTTCGAATTGGT
TTGGAAACAAGCGAATTCGGTACAAGAAGAACATAGGGAAAGCGCAAGAG
GAGGCCAATATGTATGCAGCCAAAGCACAACAGAATCAACATCAATCTAC
AGCTGGTGGAGGTGCCGGTGAAGGTGGAAGCTCGACAAGCACTATTGCTT
CCAATCATATTGCTGAACAAGTTTCCCCCAGAGAAGACCATCACCATGCG
CATGCGCACCATCATTCACCGACAGAACATCATCACCATAGTGACATGAC
GTCCCCTTATTCGACAGCACAGTCGTCTCATCACTCGCAGCAATCCCAAT
TGTCAAATGGACCTGATTGCGCTGTGAGTAACTTGCATCACGTGGTATCG
CAGGCCACCAGTGGATATAATACAAGCATCCAAAGTGCAGATTCTATGTC
CATGGCTAACGGTGGTGAAGGAGCTTCAGCTACCACTGAACCATCTGTCA
GTAATTTCAACACATTGTTGGACTCCATCAATAACAGCCCCTGGGgaaag
GTTGATTCCCATAACCACCATTCTAACACTGGAAGACATGGCTAAATCCA
CAAATGCGATGTTTGATTTATTGTTAATTGTTGGCTAATTTACATAGCTA
ATATCGTAACCCTCGCCTCGCGGATTGCTGAAAAACATTATCTGCGCACA
AAATGGCGAGATGTCTGTTGGAAAGATAACATACAACAACGGGTTAACGC
CCTTCACAAAACGTTTTACTTTATACTATATTCTTTTTAGCGAGTTTAAT
ATTATTTTAGTATGTAGGATAGTAATTGAGTAGATctagattttaaattt
taaatctaaAAACTGACTAGTGATTGCCATTCTATGACCGACCTACCCGT
GCAACCTATGTAATTGGCTATAGCCTTATTACCCCCTAAATACGTAACAA
TCTATGAAGTGTAAACTGATGACTGGACTCGAACTTGTGATTTCTCATCG
CTGCGCTGCATAGACATTACTGATCAAGTCATGGGGTagaaaccattgag
tttaaagctcgaagggctagagttcaattcGGGCTTTAAAGTCATGGGGT
AGAAACTATTGAAACTATTTGTTACCAGAGTTTCGACACGTCAGTCTTCA
ACATATAAACCTGCCAATAACTAAAGCGAAAGTCTATTACGtgtagaaaa
tatattttttagcataaagatttttttttatttttgactatTATTTCATA
ATGTATcctttttgactattttttagTTGCATATAATATTGTATATagct
atttttaaattttttgattctCTGTAGCATTTACTTTGGTATTAAGTATT
TCAAGTTACCGATGTAGAATGATTGATTTCTTCACGTTTTGTTGAACAAA
TACGACTCTTATGCTAGTCTCAAGAACGGTAATAAGCTGAAAAGATATAA
TGTAGTACTGTACCATTTCTGTCTCCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_288:480280..489671-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057374 ID=TCONS_00057374|Name=TCONS_00057374|organism=Clytia hemisphaerica|type=transcript|length=9392bp|location=Sequence derived from alignment at scaffold_288:480280..489671- (Clytia hemisphaerica)
ATTTTTCTTCATGTTCATTCATTCTTAAATTTTCTAGACAACTAACAAAG
AAAATAAAAAGTAGAATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGGTACGACATATTTTTCTTCCTCTT
TGCTCGTTTGACAGACCATTTCATAAATTATTTTAACTGCAACGACTGAC
TCTTTTTGAAACCATCGATCACCAAGGTAATTAAATCGTTTGAGCCTTCA
AGTGCTACTTTTCTCAACTTCAGTTGAGCTACAATCTGACAATGTCTGTC
TGTCACAAAAACTTTAGGGCAGCTTGGATTTGGCTGAAATCTGGCACACT
TGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTT
TGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAGGCTAAAACT
TTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTG
CACACTTGTTCCTTGGGTGATTATCTGAGGACGTATTTCTTTTATTTTTC
AAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAAA
CTAAAGCTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTG
AAATTTTCAAACCATCCGTTTAATGATATTCTATTTTCAATGATAAAGAA
AGGAGGCGCGTCTGCTGACTAAGTAAAAAAAGCAATAAGAATTCCTCCAT
AGGTGTGCTAGCGCACTGCGGAAGAGAGAAAGAGTTGTTTTTTCTTTCGT
TCAAAAATGCAATGTCAGCAAATGGTAGGAGATATGTTAAATAATGTCAT
TTTATGGCTCCATTAAAAATCACAATATTCACTAAGGAAACTTTTGAATT
GCTTGTTCTTTCATTAGCAGATGGGGCAAGCACCTCAGCAGCAGCCTTCG
ACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCAAATGCCGGA
TGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGC
AAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAAATTGGTGAT
ATTTTACACCAAATCATGAATATCACGGACCAATCACTGGACGAAGCTCA
AGCCAGGTAAGAGGGGGACATTGAATTTATACATTAAGGGTTCTTGTTGT
TACTTTTTAGTTGGATTTTGCAAGGGTTGTAAATTTTTTTGGAATTATAT
TCAAGCTTTGATATACCTACCGAAATAGAACTGGTTCCAGTATCATTCTC
GCTTAGAAATGAATTTCAGATGCCTCTCTTTAATTCGATCTTCAAGGCAC
TAAGAAATTTCTTTGAATAAGATAAAATTTAAATTATATGTAGAGTATTT
TGACCTACTTCCCAGCTGAGGGGACCAATGTTTTAGTTCGAATTATAGAA
GTTCGAATTAGAAAGAGTTGACTGTAACCATTTAAACAAAATTAAAGAAA
TGCTATCGAAATCCAATTTGGCTGTAAAAGACCAAAGACGACCTTTATTA
CCAGTACTATTTTTTGTATTTTTGGTTTTGCAGGAAACAAGCTTTGAATT
GCCACCGCTTGAAGCCTGCATTGTTCACAGTGTTGTGTGAAATTAAAGAA
AAGACAGGTAAGATGTTAGCCTGGGCTCATTTATAATCCATGTAATACAC
CTTTTCGACCGTAGTCGTGTGGTCTGGCGCGTGCCACTTGATTATTTAAT
TATCCCACTAAACTCGATCCAATGCTTTTTAGGATAAAGCGGACAAAAAA
ATGCCCGCGCGGCAATTGCCGGCTACGGTCGAAAAGGTGTATACAGTAGC
ATGGGTATTATATGATAACACGATGATTGTTTGTGTAAACTACAATTTGT
CTATTCCATTATTTTATGCTTATTTTCTACCATGTCTGAATTAGTCTGAA
TTAGCATACTTGACTAGCAAGAGGCTATTATAGTTTTTTTCCTCATGAGG
GAATGGTTCGGTTTCCGTTAAAGGACTTTGTTCAAAAGATCATATTATTG
TGCTCAGAAAAAATTATTTATAGAAGGGCAAGGTTTTCTCATGTTACTGG
TTTAAAGTGCCAATTCGAAAAATGATCAACAACTCTTGATATGATATTTG
TGTAGAAAGGTGCGAGCCGAATTTCGCATATTTTGTCTTAAATCACCAAA
TCTTCCAAGTCTACCAATCACTAAATTAAGCCCACGCCTAAGTCAATCTA
TTTTTTAGGGTAGCCTTTACAATCTTTGTCCGTTTCTCATTTAGTTTTAA
ACATGCGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGA
TTGGATAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGG
AAGTACGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATG
TGGATTACAAAATGAAGCTCTCGCAAATCCGACAAATTTACCACACCGAG
CTCGAGAAATATGAACAGGTACTTATAGGTTGAAGTCACTGATCTTTATT
GGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTC
CGTTCGTCTGTTCTTTCGTCTGTTCGTCTGTCCGTCCGTCTGTTACCAGC
TTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGGGCCTGAATGGTTTAAGTGATTTTCG
TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT
TTATTTTTCCATTCTGAATTTTGGTACAATTATTGTCATTTTTTTCTTAT
TTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTT
AACCCTGAACTAAGCTTTTTCCAACATCTATGATCTGAGTTCTTAGAAAT
GGTGCCTACTAGTTGCAATACTCAATTTGGGTCAGTTTAGATTTAAAGAA
ATTTTCCGTTTTGTTTTCACTCGCACTTTCGAAAAACTCCAGTAAAAGAT
TTTGTTTGCTGGGATCGAGAAACTGTGTCAAGAGTATATAGAAGTCAGTG
GTTGAGGTCGATTCTCATCCATAAACATCAACTATGTGGATACAGGCAGC
GTTTTTCTTTTTGAAAAATTCAGGAACTCTGTCTAGTCGTCCATATTCGC
ACTCACGTTTAATGATTTCCGACTATGTAAATAATGTGTCTAAGCTTGTC
TATCAACGACCCCCGTTTCCTTTTGATATTGGTCATTCGTGCAAAAGAAG
TAATACATGTACTTATTTATTTGAGCATAATTCAAAACGTTCCGAAACAA
TGTTCCTTTGAGATACCTTAATCATTCTTATATTGCTCGGGAAATTCTTT
CTTACAATCCAGTCATAAATATGAAGCCTGATAAAAGAACTGCCTTGTCA
AGAATTCGGTATACAGCCCGTGGAACTCATGAAACTTTTATAATATTATC
ACTTAGGCTTGTTCCGAATTCACTACTCNTGGAACTCATAAAACTCTTAT
AATATTATCACTTAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTT
GTTACGTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAAC
GTATGGTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTG
AAGCAAAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGA
TGCAAGGTGAGAATGATTTTATACCGAAATCCCACGGTCATTACCAGAGC
ACGGTGGTCCTGATTACCCATAATTCTTTTCGACCCTTGAAATGGCCTAT
AATATGCATCTTTATAAAATTATATTCATGACAATTATAGCAAAAAGTAT
CTATTCGCAGACACGTATTCCGTCCTTCCCAGGACTCATCAGTGCGGCTC
GGGTAAGCGAGCATAGACTGCTGTTGTCACCAGAGTGCTCAATACACTAA
GTGTTGAGCTTCGCATAATCGCTTGTGGTGAACGGAGAAGCAGATCTTGC
TCCTCAACAGAGTCTATAGAGTGCTCAAATAACCGAAATTCTGAGCGTAA
TACATAACAAAAAGTATCAATACATAGGTAATAGTTATCGGACAGTTGCG
AGTACAATATGAGAAATATTTTACGAGTTCCGAGATCTTTCCGTAGGCGA
GGAAAATATACGGAAAATCCGGAACGAGTGAAATATTTCCATATTGTACG
AGCAAACGTCTGATAACTAGTTTATCGGTGACCCAAAAAATGCACTTTTT
GTGTTGGAGGACACTTTTGTAGCAAAGTGACGTTAGATTGCTTCTACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAACATCTTTTCGTCAATTTATATTTTTACATGTAAAATAC
AAGACATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGA
TCGCCGATAGCAAAAAGTATAAATTAGATCTGTTAAAATATTAAATGTTT
GTTCTCTCTACCAGACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGA
GATTTTGAACGAATATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTG
AAGAAGCCAAAGAGGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAA
GTAAGGAGCTACACGTTAAAAGTTTTATTTTTACACAGTTCCCTGTTTCA
TATCAGACACATTTTTAGGTCTGCCTTTTGTTATACGGTATTATGCTGAT
ATAAGCATAAAAATATTTTTCTTTTCCTCTTTCCGACCAATCTTGCTCCA
CATCCATGTCAATCCAATGTGAAAAAGCTAAGATTACAAACGATATCACT
CTTAGTCTTATTTAAAAACAAAACCTTTTAAAGGCAATGTACTACTATTA
CTATTGGTCATTGGTTGCTGCACAAGCGACGAGGTTTGGTTCAAGTGAAC
GAACCTTAGCCTGGGTCAGCCCATTCCATATGAGGGGAATTAAGTAGTCG
CTCTAAGGTGTGAAGGGAATCAGGTAGTCGGTCTCCGCTGCTAACGAGGT
GCTCATTGAAAGCGACTATAGTTGCGAAAATAGGCCTTGGAGCATCCTGC
AACTCAACCAAATAAAAACAAATGGAAATAGTCATTCTTCCTTTTGTAAG
CAACCGTAAGGCTCAAGCTCTGAAATCAGCCTAAAAAATTCGTCCTGTAA
TGTTCTCAAGGTCAAGATAAAAATATTATTATGGGAGGTCCTACAAAGTT
TTAAACTCCAGCCCTGAGTCTAAAATCTGTGTTGCTTAGATAATGTTTCG
ATACCTGAACCTGTTTCCATACAAATCAAGACCACAGAGTTTTGTAATTA
ACTCTTCTACAAGAGAAAAAAAAAAGTATGCGCCTCTAGTTCCAATTCCC
ATCCCGTCATTAGGTTTCAAATTGGCTTGGGGAACAAGCGAACTTCATAG
ATGATAGTCTAGCTAGCCAGCTGGCCGTGGACCCCGTGGAAATAATCGAA
GCCCTGTATTACTAGGCTATTCACGTAAAATAACGACTCTATCGATCTAG
CCATATTGAACAATTTTCACACTAACTCAAAAAAATTCCCTTCCAATCAT
TAGGTTTCGAATTGGTTTGGAAACAAGAGAAGTTCATTGAAAAGCTGAGC
TAGTCATGCTATGGGACCCGTAGAAAAAATCGAAAGACAGTCTTAAAATC
CTAGATTACTGGGTTATTAACGTAAAATATCAACTCTGAAAGTTTCTTTC
CCATCATTAGGTTTCGAATTGGTTTGGAAACAAGCGAATTCGGTACAAGA
AGAACATAGGGAAAGCGCAAGAGGAGGCCAATATGTATGCAGCCAAAGCA
CAACAGAATCAACATCAATCTACAGCTGGTGGAGGTGCCGGTGAAGGTGG
AAGCTCGACAAGCACTATTGCTTCCAATCATATTGCTGAACAAGTTTCCC
CCAGAGGTACAGAATTTACTTAAAAGACGTCTTAGTAATTATTTTAAAAC
CTATCCTTTGTCGCTATAGTTTTTTAGCACTTAGACCATGTTCGTACGTA
ACGGTCCAGTTTCGCTCCCAAACGAAATGAAGCCATTCTATTGGTTAGAA
TTGACGTAAATCTTGAATTTAACCAATAGAATGGCTTCATTTCACCGTAG
TGTTTGAACATGGTCTTATTTGCTCCGTTATTCAAAAACTCTTTTTAATG
ACCCAATGGAAAGTCACACCCACCGTAAGAGCCTGACTGGATGTTGCACA
CGGCCCAAAACCAAAAAAATCTATAATAAAAGTAATACGCTGAGAATGTT
TTTCTTTATCCATTATTTTTACTGAAACTCTCATTTCTTGTTTCGTTCAT
TTTTTAGAAGACCATCACCATGCGCATGCGCACCATCATTCACCGACAGA
ACATCATCACCATAGTGACATGACGTCCCCTTATTCGACAGCACAGTCGT
CTCATCACTCGCAGCAATCCCAATTGTCAAATGGACCTGATTGCGCTGTA
TGTTTTTAATTGTATTCTTTTTGTTGTATCTTCATTTTTTTGCTACTGTA
GTTCCGTAAGTAAGTAAGTAAGTTTGCGACCGCAGTCGAGGGCGACCCGA
AGGATGGGGAGTGCGCCACTCCTAGTTCTGTATTTGAATCGTTCAAGCAG
TTAAATGCTTTAGATACTAACCAAAGTTGTCACTTCACTTTCATTGACCG
CTCTACCTTTCCAAATCATCCTAGATAACTCTGAAATATGGTTGCCAAAT
TTTCACATTTTTTGTAAATTTTAATCAATAATATGGTTGTGTGAAACCTG
TTGAGTGGATTTGTTGTTGTTTAGGGGTCTTAATTGTCGTTAATCTATAC
ATTTTGACTGTCTTCACTTTTCTTTCTAGGTGAGTAACTTGCATCACGTG
GTATCGCAGGCCACCAGTGGATATAATACAAGCATCCAAAGTGCAGATTC
TATGTCCATGGCTAACGGTGGTGAAGGAGCTTCAGCTACCACTGAACCAT
CTGTAAGTTTTGTACAATGTGTTGTCATGCTTTTCTATTCACCATCTTCA
AGACGTTATGTTTTATACAGAAGCACCATAAATAACCCCGGGCGTTTGCC
ACTGGTTTTATTGTTCGAAAATCAAAACTAGTAGCAAACTCCCGGTCTTT
TGGGGGTGTTTCTTTATCAAACATTAACAATATCCCGAATTTCGATATTA
ACTAAGGAAATTTAGTTGATTGATTGTTTTTCCTAAATTCTTGTCTTTCT
GACAGTGTAGTAATGGTTTCTGATTGAACTTAGTCCGAAATTTTTTCGGC
TTCTTGAAGAAGTAGACTTTGAAACCATGGTATAATTGCTTTTGATTGTT
GATTTAACACTTTCTGAGCCATGAATAGCTGTTTAAAATGTTCTTTCGTT
AATTTGTGTAGGTCAGTAATTTCAACACATTGTTGGACTCCATCAATAAC
AGCCCCTGGGGAAAGGTATGTTTTTATTTTGTTGTTCCTTATTTCTTTGT
CAGACTTCCATTTTTCCTGTTCCCTCTGCAGAGAAGAATCGTACCTTCTC
GAACGAAAAACCTTGTCTTTACCAAGAAGTCGAGTTTTTGAAATTGTCAA
AGTTTTTGGAACTTTTCCTTGCGAAATAAATCAAGATGATTAACCTAGTA
TTTTTTCCTTCAGGTTGATTCCCATAACCACCATTCTAACACTGGAAGAC
ATGGCTAAATCCACAAATGCGATGTTTGATTTATTGTTAATTGTTGGCTA
ATTTACATAGCTAATATCGTAACCCTCGCCTCGCGGATTGCTGAAAAACA
TTATCTGCGCACAAAATGGCGAGATGTCTGTTGGAAAGATAACATACAAC
AACGGGTTAACGCCCTTCACAAAACGTTTTACTTTATACTATATTCTTTT
TAGCGAGTTTAATATTATTTTAGTATGTAGGATAGTAATTGAGTAGATCT
AGATTTTAAATTTTAAATCTAAAAACTGACTAGTGATTGCCATTCTATGA
CCGACCTACCCGTGCAACCTATGTAATTGGCTATAGCCTTATTACCCCCT
AAATACGTAACAATCTATGAAGTGTAAACTGATGACTGGACTCGAACTTG
TGATTTCTCATCGCTGCGCTGCATAGACATTACTGATCAAGTCATGGGGT
AGAAACCATTGAGTTTAAAGCTCGAAGGGCTAGAGTTCAATTCGGGCTTT
AAAGTCATGGGGTAGAAACTATTGAAACTATTTGTTACCAGAGTTTCGAC
ACGTCAGTCTTCAACATATAAACCTGCCAATAACTAAAGCGAAAGTCTAT
TACGTGTAGAAAATATATTTTTTAGCATAAAGATTTTTTTTTATTTTTGA
CTATTATTTCATAATGTATCCTTTTTGACTATTTTTTAGTTGCATATAAT
ATTGTATATAGCTATTTTTAAATTTTTTGATTCTCTGTAGCATTTACTTT
GGTATTAAGTATTTCAAGTTACCGATGTAGAATGATTGATTTCTTCACGT
TTTGTTGAACAAATACGACTCTTATGCTAGTCTCAAGAACGGTAATAAGC
TGAAAAGATATAATGTAGTACTGTACCATTTCTGTCTCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036148XLOC_036148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057374-exon-scaffold_288-1575043694:489446..489671TCONS_00057374-exon-scaffold_288-1575043694:489446..489671Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:488416..488651TCONS_00057374-exon-scaffold_288-1575043694:488416..488651Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:487915..487988TCONS_00057374-exon-scaffold_288-1575043694:487915..487988Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:487054..487277TCONS_00057374-exon-scaffold_288-1575043694:487054..487277Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:485366..485556TCONS_00057374-exon-scaffold_288-1575043694:485366..485556Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:484222..484357TCONS_00057374-exon-scaffold_288-1575043694:484222..484357Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:482916..483111TCONS_00057374-exon-scaffold_288-1575043694:482916..483111Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:482375..482514TCONS_00057374-exon-scaffold_288-1575043694:482375..482514Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:481870..481992TCONS_00057374-exon-scaffold_288-1575043694:481870..481992Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:481407..481460TCONS_00057374-exon-scaffold_288-1575043694:481407..481460Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1575043694:480280..481208TCONS_00057374-exon-scaffold_288-1575043694:480280..481208Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:489446..489671TCONS_00057374-exon-scaffold_288-1510915933:489446..489671Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:488416..488651TCONS_00057374-exon-scaffold_288-1510915933:488416..488651Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:487915..487988TCONS_00057374-exon-scaffold_288-1510915933:487915..487988Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:487054..487277TCONS_00057374-exon-scaffold_288-1510915933:487054..487277Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:485366..485556TCONS_00057374-exon-scaffold_288-1510915933:485366..485556Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:484222..484357TCONS_00057374-exon-scaffold_288-1510915933:484222..484357Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:482916..483111TCONS_00057374-exon-scaffold_288-1510915933:482916..483111Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:482375..482514TCONS_00057374-exon-scaffold_288-1510915933:482375..482514Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:481870..481992TCONS_00057374-exon-scaffold_288-1510915933:481870..481992Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:481407..481460TCONS_00057374-exon-scaffold_288-1510915933:481407..481460Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1510915933:480280..481208TCONS_00057374-exon-scaffold_288-1510915933:480280..481208Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:489446..489671TCONS_00057374-exon-scaffold_288-1491911889:489446..489671Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:488416..488651TCONS_00057374-exon-scaffold_288-1491911889:488416..488651Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:487915..487988TCONS_00057374-exon-scaffold_288-1491911889:487915..487988Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:487054..487277TCONS_00057374-exon-scaffold_288-1491911889:487054..487277Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:485366..485556TCONS_00057374-exon-scaffold_288-1491911889:485366..485556Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:484222..484357TCONS_00057374-exon-scaffold_288-1491911889:484222..484357Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:482916..483111TCONS_00057374-exon-scaffold_288-1491911889:482916..483111Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:482375..482514TCONS_00057374-exon-scaffold_288-1491911889:482375..482514Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:481870..481992TCONS_00057374-exon-scaffold_288-1491911889:481870..481992Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:481407..481460TCONS_00057374-exon-scaffold_288-1491911889:481407..481460Clytia hemisphaericaexon
TCONS_00057374-exon-scaffold_288-1491911889:480280..481208TCONS_00057374-exon-scaffold_288-1491911889:480280..481208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:480280..489671 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44143	4.15656	1.54938	0.992708	34.3398	21.2929	27.7361	28.4087	12.3954	11.8249	8.22141	7.62786	5.08302	5.75527	11.6668	17.7558	14.992	14.7263	1.72319	1.78441	7.7295	8.30037	10.513	10.5208	9.05543	9.20375	7.02127	8.12294	5.4985	5.43226
Blast
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BLAST of TCONS_00057374 vs. Swiss-Prot (Human)
Match: PBX3 (Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens GN=PBX3 PE=1 SV=1)

HSP 1 Score: 458.759 bits (1179), Expect = 1.263e-152
Identity = 224/283 (79.15%), Postives = 250/283 (88.34%), Query Frame = 2 
Query:  344 PPPPQMLDDENTEMRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEKTVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDKSGSTXXXXXXVH------DSQIENVDYKMKLSQIRQIYHTELEKYEQACSEFTTHVMNLLREQSRTRPVSKNEIERMVNVIHWKFNSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQSTEILNEYFYSHLSNPYPSEEAKEELARKCGISVSQVSNWFGNKRIRYKKNIGKAQEEANMYAAK 1174
            PPPP   +  + + RKQ+IGDILHQIM ITDQSLDEAQA+K ALNCHR+KPALF+VLCEIKEKT L++R   E++PPDPQLMRLDNMLLAEGV+G +K G +AAAAAA        D+ IE+ DY+ KL+QIRQIYHTELEKYEQAC+EFTTHVMNLLREQSRTRP+S  EIERMV +IH KF+SIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQ+TEILNEYFYSHLSNPYPSEEAKEELA+KC I+VSQVSNWFGNKRIRYKKNIGK QEEAN+YAAK
Sbjct:   28 PPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNIGKFQEEANLYAAK 310
The following BLAST results are available for this feature:
BLAST of TCONS_00057374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PBX31.263e-15279.15Pre-B-cell leukemia transcription factor 3 OS=Homo... [more]
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