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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057347 ID=TCONS_00057347|Name=TCONS_00057347|organism=Clytia hemisphaerica|type=transcript|length=1110bp
TTATCCAAACACAATAACTGCTTGAGTAAAGTATTGACTCCGCAAATGTA
TACGAAACTTCGTGATTTGCAAACACCAACAGGTTATACACTTGACATGG
CCATCCAAACAGGTGTCGACAATCCCGGACATCCGTTCATTTCAACGGTC
GGTGTTGTTGCCGGTGATGAAGAATCTTATGAAGTCTTCAAAGAATTGAT
GGATCCCATTATCCAAGACAGACATAATGGTTTCGGACCTAACGATCAAC
ATAAGACCGACCTCGATGCCTCCAAAATTAAAGGTGGCAAATTTGATGAG
AAGTATGTTTTGAGTTCACGCGTGCGCACAGGACGTTCTATCAAGGGACA
TTCCCTGCCACCGCACTGCACTCGTGCTGAACGTCGCAGTGTTGAACACA
TTGTCACATCTGCTTTGAACTCGTTACAAGGTGATCTGGCTGGTACTTAT
TATCCGTTATCTGGAATGACAGACGATGAACAACAACTATTGATCGATGA
TCATTTCCTGTTTGATAAACCAGTGTCTCCATTGTTGACCTGCGCTGGTA
TGGCACGTGACTGGCCTGATGCACGTGGTATCTGGCAcaacaaaaataag
aatttcCTGATCTGGATCAACGAGGAAGATCACACTCGTGTCATCTCTAT
GGAGAAGGGCGGAAACATGAAAGGTGTCTTTGAACGTTTCTGCCGTGGAT
TGAAAGAAGTTGAGAAACATATTGAGGAACATGGCCATGGATTTATGTGG
TCCCAACGTCTTGGGTATATCTTAACTTGTCCATCCAACCTTGGAACTGG
CCTTCGAGCTGGTGTTCACGTGAAATTACCAAAGCTGTCTCAAGACAAAC
GTTTCGATAACATTCTTCAAGCATATCGTTTACAAAAACGGGGAACAGGA
GGTGTCGACACTGCTGCTGTTGGTGGTACCTTCGATATTTCAAACTTGGA
TCGTCTTGGACATTCTGAAGTTGAACTGGTTCAACAAGTCATCAATGGTG
TCAACAATCTGGTTGACATGGAAAAATCCTTAGAAAAGGGTAAGAAGATT
GACAGccttttgcccaaaaacatgAAGTCTCAATAAACTTCACATCCAAT
GAAACcgtat Run BLAST on NCBI transcript from alignment at scaffold_288:166574..168537- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057347 ID=TCONS_00057347|Name=TCONS_00057347|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at scaffold_288:166574..168537- (Clytia hemisphaerica)
TTATCCAAACACAATAACTGCTTGAGTAAAGTATTGACTCCGCAAATGTA
TACGAAACTTCGTGATTTGGTAAGTTCATAAGCATGGATTTTTTCTTTTT
TCAATGATCAGTCCTTAGAAGGGTCGGATTGTTTCATCTTGATTTTTGAA
TATTGCGCTGTTTGCATTTGATCATTTGACACTAGCAGATTTTCTTATCT
TAAAGGTAAACAGGTAAAATGTGAACCAAAACGCAGACAAAACAAAGATA
AGTTTTCTATAGTAAACATCATAGGAGGCAGATACCTTCGAAAGATACGG
GATTTACAACTTTCCCATTCTAAAAGTCCTTTTGAATACTTTTCAAACTT
CAATTCGGATATCCATTCATTAGAATAGAAAGTGCTAGACCGCATATATG
TCAATAGCGCAAGAAAGTTAAATTCAAACGATCAAGTGAAAACATTCGTC
TTTTATTTAACTTTCAATCATAAAATTTCTTCTTTTTACAGCAAACACCA
ACAGGTTATACACTTGACATGGCCATCCAAACAGGTGTCGACAATCCCGG
ACATCCGTTCATTTCAACGGTCGGTGTTGTTGCCGGTGATGAAGAATCTT
ATGAAGTCTTCAAAGAATTGATGGATCCCATTATCCAAGACAGACATAAT
GGTTTCGGACCTAACGATCAACATAAGACCGACCTCGATGCCTCCAAAAT
TAAAGGTATTTCATACTTTGTTTATCAACATGTAGACATTGTTAAAATAT
TTTTGATAGAGATTAAATATTTGGTTTTGGTTTCTCAGACAAGGCGGACC
AGCCTTAGAAGGTCGAAATTATACAAAAAATCTAAATACTAAAAAAAGTA
AAGATAACGTAGGTTCTGGCAAGGATAAGGTCTGGCAACAATATGAAAAT
CAAATTCATCGAAATCATTTTTTTCTAATTTGCAGGTGGCAAATTTGATG
AGAAGTATGTTTTGAGTTCACGCGTGCGCACAGGACGTTCTATCAAGGGA
CATTCCCTGCCACCGCACTGCACTCGTGCTGAACGTCGCAGTGTTGAACA
CATTGTCACATCTGCTTTGAACTCGTTACAAGGTGATCTGGCTGGTACTT
ATTATCCGTTATCTGGAATGACAGACGATGAACAACAACTATTGATCGAT
GATCATTTCCTGTTTGATAAACCAGTGTCTCCATTGTTGACCTGCGCTGG
TATGGCACGTGACTGGCCTGATGCACGTGGTATCTGGCACAACAAAAATA
AGAATTTCCTGATCTGGATCAACGAGGAAGATCACACTCGTGTCATCTCT
ATGGAGAAGGGCGGAAACATGAAAGGTGTCTTTGAACGTTTCTGCCGTGG
ATTGAAAGAAGTTGAGAAACATATTGAGGAACATGGCCATGGATTTATGT
GGTCCCAACGTCTTGGGTATATCTTAACTTGTCCATCCAACCTTGGAACT
GGCCTTCGAGCTGGTAAGTATGACAATAATCAGCAATGTATGTCTTTTCA
AAAAGATTTTTCGTTGAAACGTAGTATTTAACCAAATTTCAAACTTTGGG
GCCGAAAGAAACCGAAAGGTAATATTAACTTAAACAACTAACAACTTCTT
ATATCAAAATCTCGTGGATCAAGCTAAGTCCGAATAACATTACATGCTAT
ATCTTAAACTTTCAGGTGTTCACGTGAAATTACCAAAGCTGTCTCAAGAC
AAACGTTTCGATAACATTCTTCAAGCATATCGTTTACAAAAACGGGGAAC
AGGAGGTGTCGACACTGCTGCTGTTGGTGGTACCTTCGATATTTCAAACT
TGGATCGTCTTGGACATTCTGAAGTTGAACTGGTTCAACAAGTCATCAAT
GGTGTCAACAATCTGGTTGACATGGAAAAATCCTTAGAAAAGGGTAAGAA
GATTGACAGCCTTTTGCCCAAAAACATGAAGTCTCAATAAACTTCACATC
CAATGAAACCGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057347-exon-scaffold_288-1575043694:168469..168537 | TCONS_00057347-exon-scaffold_288-1575043694:168469..168537 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1575043694:167833..168046 | TCONS_00057347-exon-scaffold_288-1575043694:167833..168046 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1575043694:167075..167602 | TCONS_00057347-exon-scaffold_288-1575043694:167075..167602 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1575043694:166574..166872 | TCONS_00057347-exon-scaffold_288-1575043694:166574..166872 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1510915933:168469..168537 | TCONS_00057347-exon-scaffold_288-1510915933:168469..168537 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1510915933:167833..168046 | TCONS_00057347-exon-scaffold_288-1510915933:167833..168046 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1510915933:167075..167602 | TCONS_00057347-exon-scaffold_288-1510915933:167075..167602 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1510915933:166574..166872 | TCONS_00057347-exon-scaffold_288-1510915933:166574..166872 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1491911889:168469..168537 | TCONS_00057347-exon-scaffold_288-1491911889:168469..168537 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1491911889:167833..168046 | TCONS_00057347-exon-scaffold_288-1491911889:167833..168046 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1491911889:167075..167602 | TCONS_00057347-exon-scaffold_288-1491911889:167075..167602 | Clytia hemisphaerica | exon |
| TCONS_00057347-exon-scaffold_288-1491911889:166574..166872 | TCONS_00057347-exon-scaffold_288-1491911889:166574..166872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:166574..168537 - |
Blast
BLAST of TCONS_00057347 vs. Swiss-Prot (Human)
Match: KCRS (Creatine kinase S-type, mitochondrial OS=Homo sapiens GN=CKMT2 PE=1 SV=2) HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0 Identity = 263/351 (74.93%), Postives = 297/351 (84.62%), Query Frame = 1
Query: 1 LSKHNNCLSKVLTPQMYTKLRDLQTPTGYTLDMAIQTGVDNPGHPFISTVGVVAGDEESYEVFKELMDPIIQDRHNGFGPND-QHKTDLDASKIKGGKFDEKYVLSSRVRTGRSIKGHSLPPHCTRAERRSVEHIVTSALNSLQGDLAGTYYPLSGMTDDEQQLLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNKNKNFLIWINEEDHTRVISMEKGGNMKGVFERFCRGLKEVEKHIEEHGHGFMWSQRLGYILTCPSNLGTGLRAGVHVKLPKLSQDKRFDNILQAYRLQKRXXXXXXXXXXXXXFDISNLDRLGHSEVELVQQVINGVNNLVDMEKSLEKGKKI 1050
L KHNNC+++ LTP +Y KLR+ TP GYTLD IQTGVDNPGHPFI TVG+VAGDEESYEVF +L DP+I+ RHNG+ P +H TDLDASKI G+FDE YVLSSRVRTGRSI+G SLPP CTRAERR VE++ +AL L+GDLAG YY LS MT+ +QQ LIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHN +K FLIWINEEDHTRVISMEKGGNMK VFERFCRGLKEVE+ I+E G FMW++RLGYILTCPSNLGTGLRAGVHV++PKLS+D RF IL+ RLQKRGTGGVDTAAV +DISN+DR+G SEVELVQ VI+GVN LVD EK LE+G+ I
Sbjct: 57 LRKHNNCMAECLTPAIYAKLRNKVTPNGYTLDQCIQTGVDNPGHPFIKTVGMVAGDEESYEVFADLFDPVIKLRHNGYDPRVMKHTTDLDASKITQGQFDEHYVLSSRVRTGRSIRGLSLPPACTRAERREVENVAITALEGLKGDLAGRYYKLSEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNYDKTFLIWINEEDHTRVISMEKGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHVRIPKLSKDPRFSKILENLRLQKRGTGGVDTAAVADVYDISNIDRIGRSEVELVQIVIDGVNYLVDCEKKLERGQDI 407
The following BLAST results are available for this feature:
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