TCONS_00057402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057402
Unique NameTCONS_00057402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057402 ID=TCONS_00057402|Name=TCONS_00057402|organism=Clytia hemisphaerica|type=transcript|length=360bp
ATTGGTTTCAAAGAAGCGTTACGTTATTTCCCGTATACGTGCTTCGTTTT
CCATGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTACGACTGTC
GTCAATCTCCTGCGCATATGTCGGTAGCAGTGGAAACGTTAGGTTATATG
CCTCTTCAATATGAACATTTTGGAGGAGTTGTGTCAACAACGAAAGCACA
CTTTGAACTTGCAAATGGTTACTCGAATATATTTTGGCAATGGGGTGGCG
AAGACGATAATGTATCTCATCGGTTACGTAAAAATGGTTTGAAAATACAT
AGACAACCAAAAAATGTTGCTGGATACAAAATGTTAAGTCATACACCAGC
TAAACGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00057402-protein

>TCONS_00057402-protein ID=TCONS_00057402-protein|Name=TCONS_00057402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
IGFKEALRYFPYTCFVFHDVDLVPENDRIFYDCRQSPAHMSVAVETLGYM
PLQYEHFGGVVSTTKAHFELANGYSNIFWQWGGEDDNVSHRLRKNGLKIH
RQPKNVAGYKMLSHTPAKRE
Run BLAST on NCBI

transcript from alignment at scaffold_288:2475..2834

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057402 ID=TCONS_00057402|Name=TCONS_00057402|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at scaffold_288:2475..2834 (Clytia hemisphaerica)
TTCACGTTTAGCTGGTGTATGACTTAACATTTTGTATCCAGCAACATTTT
TTGGTTGTCTATGTATTTTCAAACCATTTTTACGTAACCGATGAGATACA
TTATCGTCTTCGCCACCCCATTGCCAAAATATATTCGAGTAACCATTTGC
AAGTTCAAAGTGTGCTTTCGTTGTTGACACAACTCCTCCAAAATGTTCAT
ATTGAAGAGGCATATAACCTAACGTTTCCACTGCTACCGACATATGCGCA
GGAGATTGACGACAGTCGTAAAAGATACGATCATTCTCTGGAACAAGATC
TACGTCATGGAAAACGAAGCACGTATACGGGAAATAACGTAACGCTTCTT
TGAAACCAAT

Coding sequence (CDS) from alignment at scaffold_288:2475..2834

>TCONS_00057402 ID=TCONS_00057402|Name=TCONS_00057402|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_288:2475..2834 (Clytia hemisphaerica)
TTCACGTTTAGCTGGTGTATGACTTAACATTTTGTATCCAGCAACATTTT
TTGGTTGTCTATGTATTTTCAAACCATTTTTACGTAACCGATGAGATACA
TTATCGTCTTCGCCACCCCATTGCCAAAATATATTCGAGTAACCATTTGC
AAGTTCAAAGTGTGCTTTCGTTGTTGACACAACTCCTCCAAAATGTTCAT
ATTGAAGAGGCATATAACCTAACGTTTCCACTGCTACCGACATATGCGCA
GGAGATTGACGACAGTCGTAAAAGATACGATCATTCTCTGGAACAAGATC
TACGTCATGGAAAACGAAGCACGTATACGGGAAATAACGTAACGCTTCTT
TGAAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036161XLOC_036161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057402-exon-scaffold_288-1491911889:2475..2834TCONS_00057402-exon-scaffold_288-1491911889:2475..2834Clytia hemisphaericaexon
TCONS_00057402-exon-scaffold_288-1510915933:2475..2834TCONS_00057402-exon-scaffold_288-1510915933:2475..2834Clytia hemisphaericaexon
TCONS_00057402-exon-scaffold_288-1575043694:2475..2834TCONS_00057402-exon-scaffold_288-1575043694:2475..2834Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057402-proteinTCONS_00057402-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:2475..2834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469904	0.45823	0.266025	0.260263	0.316846	0.250376	0.906203	0.179021	0.565072	0.490484	0	0	2.78888	1.94732	3.33534	3.57163	6.90841	7.01552	0.999036	2.29805	2.72598	3.32409	5.38782	4.16357	6.87277	6.96626	13.2088	7.2203	1.56467	0.797075
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR027791Galactosyl_T_C
IPR029044Nucleotide-diphossugar_trans
IPR027995Galactosyl_T_N
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00057402 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5)

HSP 1 Score: 109.383 bits (272), Expect = 4.282e-29
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:    1 IGFKEALRYFPYTCFVFHDVDLVPENDRIFYDCRQSPAHMSVAVETLGYMPLQYEHFGGVVSTTKAHFELANGYSNIFWQWGGEDDNVSHRLRKNGLKIHRQPKNVAGYKMLSHTPAKR 357
            +GF+EAL+ + YTCFVF DVDL+P ND   Y C   P H+SVA++  G+     ++FGGV + +K  F   NG+ N +W WGGEDD++ +RL   G+ I R    V   +M+ H+  K+
Sbjct:  230 VGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKK 348
The following BLAST results are available for this feature:
BLAST of TCONS_00057402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT14.282e-2942.86Beta-1,4-galactosyltransferase 1 OS=Homo sapiens G... [more]
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