TCONS_00057174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057174
Unique NameTCONS_00057174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057174 ID=TCONS_00057174|Name=TCONS_00057174|organism=Clytia hemisphaerica|type=transcript|length=537bp
TGACTGtctttaaaaaaacgaattCCATGTAAACAAAATGATATTTCTAT
TTCCTGTTTTCCTTTATTTAGTTACTGTCATAATGTAATAAAAAGTAAAG
AAGGAAAATAATCTTGTAGTTTTTACAAGAAGCTTGGGAGACAATGTCAA
ATCCCTTGGTTGGCTCCACCACAATTGATCCTGATGAATATTTCAAAACT
GATCCTGGAATCCCATTCCATCTTCTTCGACGAAAGAAAGCGGCTCAGCC
ACCTAGCCTTCTTTCGATGAGTACCAATTTACAAGGCTTGGATGAAGCAT
TTGCCAAATTCTCCAAACAAAACATCAAAGATGGATTAAGCAGTTTTCTA
CCAGACCTACCAGGTTATGTCGATGCTCCCGGCACCCCTCAGGACAGTTT
ACAATCACTTATTGATAAGCCGCCCATTGGTGGGCGTGAAATATTACCAC
TCAATGACTCCGCCTTACAAGGATTCCGTCTTATGCCTGGTTCTGTTCCA
GACCACTTGAAGTTCATGAACAAACCCCCTGAACGTC
Run BLAST on NCBI

transcript from alignment at scaffold_286:164575..171804+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057174 ID=TCONS_00057174|Name=TCONS_00057174|organism=Clytia hemisphaerica|type=transcript|length=7230bp|location=Sequence derived from alignment at scaffold_286:164575..171804+ (Clytia hemisphaerica)
TGACTGtctttaaaaaaacgaattCCATGTAAACAAAATGATATTTCTAT
TTCCTGTTTTCCTTTATTTAGTTACTGTCATAATGTAATAAAAAGTAAAG
AAGGAAAATAATCTTGTAGTTTTTACAAGAAGCTTGGGAGACAATGTCAA
ATCCCTTGGTTGGCTCCACCACAATTGATCCTGATGAATATTTCAAAACT
GATCCTGGAATCCCATTCCATCTTCTTCGACGAAAGAAAGGTTATTGGTT
GTTTTTCTTAGTTGTTTTTTGAACTGATAGTATCTTTTTCTTTCATGTAC
TTTCACCCACACACGCTCCGATGTTCATAACCTTTTGAAAttcaagcttt
aaaatgttcttaacctttttagtttcaagccttaaaatgttcttaacatg
ttctcataAGTAAATCAAAGTTATAACTTTTGTTgttgttaaagaaaata
aagaaaatttttaattatatGTAACAAGGTACTTAttcatttcatatttt
tatatcATCATGTCTACAAAATTGGATTGTGAGGTTTTAAATATTCTTGT
AGgatcttttttataagactaTTTTGAGAAATAAACGTAACTAAAACGCG
ACTatattcattttgattttacttgATAAAAGTAAAATAATAATCCCTTT
TAACGAAACTAGCACTAGTTGAATTTTACATAAAATCTCTTGCTTGAGGG
TAGAAATGTCAGGGTTAGGTCTGTTCTGGAGATAACTGACATTCTTTAAC
TCTTCTAGTACCCTCTTAGACTTTTTCCAAAATGGGTATCTGGATGATGT
CTAAAGGGGATTACATTTTTAGAATCgtgtttttaaagtttgataataAT
GTATGTAAGGTTTTTGGGTTGAATCGAAGCTTTTTCTATATCCTTTCAGC
GGCTCAGCCACCTAGCCTTCTTTCGATGAGTACCAATTTACAAGGCTTGG
ATGAAGCATTTGCCAAATTCTCCAAACAAAACATCAAAGATGGATTAAGC
AGTTTTCTACCAGACCTACCAGGTAATTTAATTGTTTATGCTGCAACGAT
GTAAATCAATATCTTACAAGTCTAAAGGCTTTAACTAGCCTGACTaatat
caagaaaaatttttatcgagtagaatatttttttttacatctCGGTCCCT
TTCCGTTTTGGCTCATTTTAGCTTTAATAAGTAGACGCGGATGTGGTTCT
GCGCGCTTTCTTCCTTGCcgcatacacttttttataagaaccagtaaaat
gttcctgaggctcggctgttcttattttatttGGCACTTCGagtctcaaa
ttgttcttatccggTTCTTATTTACAGGATGTAATTTAAGGTATTTTAGG
TGTTTATACCTAATCTTTTGCAATTTGaacctcattgttcttataaaaaa
gtgtatttgaCTGATGATAGGCATTTTATTCATATAAATGAAATGGTTGA
ATAATTTGAAGTTGACGGAGATGGTAATACAGAATTGTTTCGGCAACATG
GTACACTACACTATGTTTTTTTAGGTGTCTggttttttaagtttaaaaat
gagaagaaaaaaaatccaagggggtcctgaaaaattgaagaaaaatctag
gggatcacattttcaaaaaagaccttctaaacatagggggtacaaatttt
tttctggaatagcagTACAAATGTAagagcccagctggcacacaacgttg
tttcaacgtttatctaacgttcacaacattcatataacgttatattaacg
ttgaaacaacggcACACACAGCTGGGAGGTTGACTTACGTCCAAATGTGA
AGTCTTGACTTATCGTCCGTTGTTTTCTGTCCGCTTTTCGATCCATTATG
ttcaatccaaaaaaaacaagatCTTCTCGactaatttaaaatttcaacca
atctaaaaattacaaaaaccaGTCGACTCTTTTaaatgttgaaattttaa
gttagaaacATTGAAATTCTAGAAAACTTTAACTTTTGAATCTTTAACTC
AAAGCTCAAATTCTATGATAAAAAATATTGGTCATGCCCTAAATGAAATC
AATAATGTTCGTTGATAGCTAACTTTTAATTATCATATACCAAAATACTT
TGTTCAAccttggaaatttgaaaatcatttgtcatcaggaaattttttta
attttgtgatcAGGAAGGAGAAAAGGGGTTATCCAAAGGTCTCGTTTTTG
ATATTTATCTAATAAACAAGTTAAAAGTTTTTAACGATGTTACGATGTTA
TATATTTGGCccaataatattttgataatgggagagctttttttaaaaac
aactaAAAACTCCAGTGTGAAAgcttttgttgattttatacGTTTAAACG
TCTAAGCTAAGTGTCGATGTTAATGTccaatttaagaaaaatttcccatt
tttttataagaacatccaaaattgttgaagactttggatgttcttaactt
ttgatttttaagcctgaaaatgttcttaacatgttcttatttttaccact
ttttgagtatttttaccattctcctaagaaatcaggtgttttaagagtct
gcaaagccttgaaatgttattgttcttaatattttggccatcgaagcctt
tatgtatgttcttatatagtttgttcttatgaaaaaacgtgtagttaacT
TAGCCTTCATCTTCAAAAAGTATTATGTATTCGaactgaaaaatgaacaa
aatattaTCTTACCGAATCCAATCTCAAAAATTTTACATCTCAATTATAT
AACtcaaaattatgtaaattccatttgatgaaaatttttcaaaaaaagtt
tattccGCAAAATTTCCGGAAATACAAATAGGTCTATAGTAACTCTCGGA
AAGATTCTTGACAGTTTTACTGATACGCAAATGAATGAGATTTGAATGAT
TTTCGCTTAACatgaaaaagaactttttttctattttgcagGTTATGTCG
ATGCTCCCGGCACCCCTCAGGACAGGTATAAAGAAttgttgtttataatt
ttttagttttctgAATCATTGGTTGTGTTCTAAAGATTTTGTCGGGAATT
GTGAGGGTAAAGATACAAAACTTTCAGTGATCGACCCTAAAACAAATTTA
ACCTCTCATTTTAATCTCCTCAGACAAGAAAGTCCTGGACTACACTAGGA
AAATTTATACTGTTATCTGCTACCTCTTGATAATATTACCCCCGATGTAA
AACCTTTTTCTACAAAGGCCAAAGTTCTAGCAAGGTCCTACCATCGTTTT
GCTTGAATTTCCCATTCCCGCAAGAAGATTCCGCTGTCACTTTTTTACCG
GAAAATGACCAGGGCTCCGGGTACGTAAAAAatgagcttcggaaagttag
gcTATGTCGTAAGTaaacacaaaaattttctgTAGAAGTAAACTTTTTCT
AATCTCATACTGGGTATCCCGGGGAAAATAGCGGAAAATTCTTCGAAAAG
TCAGGAAGTCTTAGTGCATGAAAaggaatcttatgcaaaacgacggtaaa
agttaaaagaaaatttatgttATAGAAGCTAGTTTTTTGTTAGCCTTCTT
CATATGGATATCATTCTCTCTCAGCTCTAAGAcaatgttcagacgttacg
gctCCGTTTCAAAATGAAACGGTTCCGacacaagtgtgaacgtcaaaaaa
agaagacgttacaaagcaaaacagatcgaaacggtttcgctccccTTCtg
tcatcggaacggaactgctccgtttacttgctccgaaacgttcggAAACC
AATATGAACCCACTCGTTCCATAAAGAAAGTCATACCGGAGtaaaacgga
acagtaacgtgtgaacatggtctaaaagcTTTTTCACGACTTTCATATTT
TTTCTAGTTTACAATCACTTATTGATAAGCCGCCCATTGGTGGGCGTGAA
ATATTACCACTCAATGACTCCGCCTTACAAGGATTCCGTCTTATGCCTGG
TTCTGTAAGTGCTTTATACGTTGACCAACAACTACtgataattctaaaaa
tagagGCTATTTAGCTCGAACAAGTATTATGATCCTTCagttaaaagtta
tatttttacataagtgttcccgtgtcatattagacacatatttcatatca
ggacagtgtctgcctattgttatattatgctgatataaacaaaaaaaaaa
tgctttttggacctaccccggtgtggtggaggtcctataaattcacctct
gtccgtccgtccgtccgttcgttaccagcttttctcgagattgaatcata
gaaatcatttgatttttggtacaaaggtgcaaaacggtGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgaaaaattggat
cattatttttttctgattttttgcatgaaagtagggtaccatcataggta
aaagatggctcaagcagacttttgcaaaaaaatttatttggcttaaaaaa
cgcatgtttatctataagaatcactattaataagcattcatcaatgttct
tagccaaattactcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCcaagttcaatatttttttataagcaca
ttatcaattacttaggtattagcttttctcgagattggctctttcattct
ttaagactttttgcacaaagatacataactataaaccctcgaatgtgacg
gagcccaattttcgaaaaaaaaaaaatgtttttgggcaaatttgggctaa
aaagcgggttttttggactttgtgaaaaattggatcattggttttttctg
attttttgcatggaagtagggtacaatcataggtaaaagatggctcaggg
agatttttgcaaaaaaaaattgttggctcaagaaacgcatgtttatctat
aagaatcactattaataagcatacattaatgttcttagtcaaattactca
atttttttatgagatagatgttttttttgctcacgagggcttacttttga
agcatatgtATGTTTAGAcctgaaattttggttgcttggcgtgtttttat
agaaaaactggccaaattctatattctataagcacattatcaattactta
ggtattagcttttctcgagattggctctttcattctttatgattttttgc
acaaagatgcataactataaaccctcgaatgtgactgagcccgattttcg
aaaaaaaaatgattttttgcatgaaagtaggtaaaagatgggtcaagcag
atttttgtaaaaaaacttttcagctcaaaaaacgcatctttatctataag
aatcactattaataagcatacatcaatgttcttagccaaattactcaatt
ttttgatgagatagatgtctttttatgctcacgaagtcttgaatatgaaa
gaatatttcaagagcatgaaattttggtttctaaacgtttttttaattag
aaacaaacgactaattttaataaatcgtcactatttgtgttctgaatgat
tgtttaacgttcatgctcacgtagatatcaattatatatgggTTAAaggc
ataaccaggtaggtccataaaagtatcacttgttatttcttttttctgac
caatcttgcttcacatcagtgtcaatccaatgtgaaaaagcttgtgaatt
aaaattgatgagtgagcaaacgatatcactcatttaaaaacaaaaccttt
aacaatgCCTCATAAACGTTACTCCATAAATCGAAATTGTCTTAAATTGA
ACAAACTGTGGTTCCGGTGGgtttttcgagttatggagacttcacTGTGT
TACATTCAATTGGATAGGACTAACATCGATCAATGTGTTATTATTACGTT
GAAAACTTTACGTTACCGAAAGTTACTCAAACTATAttacaaccccttct
cacaaacccggtggggaaaaaaataacggactgaaactcgatggggattg
atgttcccacattttttatggctggggatttcaattcttttgttttcaag
ttagaaaattcagtggggatgggaaaaaagcATCATATTTTGCAGTTAGG
Ataggtttatttgattattttccgtggggacaaaaattggaggataattt
tctaCCGCattggggacaatattttggaaaatttctccaatgggaagggt
tcccagtggttctgtgagaaggggttttATATTCAGAGTAATAGTACATT
ATTAGCACTCACTTCACTATTTACTCTATTTCTTTGCGAAATTATCGATT
GGGTCATCTTACTGTGCGTCATTATACGTGTATGTGTATTGTAGCCTTag
gattagttcgattgttcgattggttcgacaagctCGATTGATCGGGTTTG
TCTGAAAGTTATAGTTTTCTGGCTGAGAATTTGAACATCTCTTGGGCCTC
GAAAATCGATATCTTTAGTACATTTTCTTAGCATCAGCTGATCTAACCCA
CCCACCCTATAGTGTCGGAATGACGCTAAGTGTCGgaaaaatcgatatgt
gagtggccccttataagatatcaaaataaaataaagatgatagATACGTC
TGATTAAGCATGGAGCTATGATTCTTAAAAATTTGTCTTCCTTTATCTAA
CCCTAAACCATCGATTTTGGGATGGAGTTTTTAGAAGCTCTCATCtgatt
tggttggttgttaaccagtaataaaacaattttgttacttttttctaaag
cagaagacgtcatttttattacttcaaatggccaattattaaagtatctt
ataaaatcCCCTGAACGTCATTTTCTGATTACTTTAGGTTCCAGACCACT
TGAAGTTCATGAACAAACCCCCTGAACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036030XLOC_036030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057174-exon-scaffold_286-1491911889:164575..164814TCONS_00057174-exon-scaffold_286-1491911889:164575..164814Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1510915933:164575..164814TCONS_00057174-exon-scaffold_286-1510915933:164575..164814Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1575043694:164575..164814TCONS_00057174-exon-scaffold_286-1575043694:164575..164814Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1491911889:165474..165596TCONS_00057174-exon-scaffold_286-1491911889:165474..165596Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1510915933:165474..165596TCONS_00057174-exon-scaffold_286-1510915933:165474..165596Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1575043694:165474..165596TCONS_00057174-exon-scaffold_286-1575043694:165474..165596Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1491911889:167516..167549TCONS_00057174-exon-scaffold_286-1491911889:167516..167549Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1510915933:167516..167549TCONS_00057174-exon-scaffold_286-1510915933:167516..167549Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1575043694:167516..167549TCONS_00057174-exon-scaffold_286-1575043694:167516..167549Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1491911889:168432..168528TCONS_00057174-exon-scaffold_286-1491911889:168432..168528Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1510915933:168432..168528TCONS_00057174-exon-scaffold_286-1510915933:168432..168528Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1575043694:168432..168528TCONS_00057174-exon-scaffold_286-1575043694:168432..168528Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1491911889:171762..171804TCONS_00057174-exon-scaffold_286-1491911889:171762..171804Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1510915933:171762..171804TCONS_00057174-exon-scaffold_286-1510915933:171762..171804Clytia hemisphaericaexon
TCONS_00057174-exon-scaffold_286-1575043694:171762..171804TCONS_00057174-exon-scaffold_286-1575043694:171762..171804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:164575..171804 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.398	65.3565	38.8305	38.4095	30.5115	29.6693	14.2306	20.8366	27.6401	28.6539	29.6656	33.1247	27.8405	25.6598	28.3209	27.7917	36.6107	34.3658	23.6321	22.0379	16.2648	23.6554	29.5975	33.602	16.4085	10.8604	16.0852	10.8478	18.8356	27.2744
Blast
[Close]
BLAST of TCONS_00057174 vs. Swiss-Prot (Human)
Match: MED19 (Mediator of RNA polymerase II transcription subunit 19 OS=Homo sapiens GN=MED19 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.543e-17
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 3 
Query:  213 PFHLLRRKKAAQPPSLLSMSTNL---QGLDEAFAKFSKQNIKDGLSSFLPDLPGYVDAPGTPQD-SLQSLIDKPPIGGREILPLNDSALQGFRLMPGSVPDHLKFMNKPP 530
            PF+L+R    +   + L+ STNL     L++A+ KF  + +K+ LS+FLPDLPG +D PG+  + SL+SLI+KPPI      P+  + L GFRL  G +P+  + M+  P
Sbjct:   64 PFYLMRELPGS---TELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQP 170
The following BLAST results are available for this feature:
BLAST of TCONS_00057174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED194.543e-1740.91Mediator of RNA polymerase II transcription subuni... [more]
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